MS018033.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018033.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold1336: 42079 .. 42417 (-)
Sequence length	339
RNA-Seq Expression	MS018033.1
Synteny	MS018033.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAGCTCCGGCGGCATGCGCATGCCTGGTGTTGGCCATTTTGGTCGCATCCTTCTCTCCAAGTTCGCCGTCCAGAGCCGCCGCCGCAAAATACGGTAATTCTTCTCCGGCTCCTCCGGCGGCGCCACCAAAGAAGCTCCACCGTTCACTCATATTCCATCACCAGAGCTCTCCCCCGCCGTCGCCGCCGGTGAAACCCCTCCGCCGTCTAAATGCCGACGGTAAAGACAAGTGTTCCGAAGAACCCGAGTATGGACATGAAGATGCAAAGCCGAATCGGAGTGAGGAGCCTTGGCCGAAGTGCCACGTGTCAAAATCGCCACCACCTCCTTTC

mRNA sequence

ATGGCGGCAGCTCCGGCGGCATGCGCATGCCTGGTGTTGGCCATTTTGGTCGCATCCTTCTCTCCAAGTTCGCCGTCCAGAGCCGCCGCCGCAAAATACGGTAATTCTTCTCCGGCTCCTCCGGCGGCGCCACCAAAGAAGCTCCACCGTTCACTCATATTCCATCACCAGAGCTCTCCCCCGCCGTCGCCGCCGGTGAAACCCCTCCGCCGTCTAAATGCCGACGGTAAAGACAAGTGTTCCGAAGAACCCGAGTATGGACATGAAGATGCAAAGCCGAATCGGAGTGAGGAGCCTTGGCCGAAGTGCCACGTGTCAAAATCGCCACCACCTCCTTTC

Coding sequence (CDS)

ATGGCGGCAGCTCCGGCGGCATGCGCATGCCTGGTGTTGGCCATTTTGGTCGCATCCTTCTCTCCAAGTTCGCCGTCCAGAGCCGCCGCCGCAAAATACGGTAATTCTTCTCCGGCTCCTCCGGCGGCGCCACCAAAGAAGCTCCACCGTTCACTCATATTCCATCACCAGAGCTCTCCCCCGCCGTCGCCGCCGGTGAAACCCCTCCGCCGTCTAAATGCCGACGGTAAAGACAAGTGTTCCGAAGAACCCGAGTATGGACATGAAGATGCAAAGCCGAATCGGAGTGAGGAGCCTTGGCCGAAGTGCCACGTGTCAAAATCGCCACCACCTCCTTTC

Protein sequence

MAAAPAACACLVLAILVASFSPSSPSRAAAAKYGNSSPAPPAAPPKKLHRSLIFHHQSSPPPSPPVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF

Homology

[Close]

BLAST of MS018033.1 vs. NCBI nr
Match: KAE8646677.1 (hypothetical protein Csa_023590, partial [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-13
Identity = 56/102 (54.90%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 18  ASFSPSSPSRAAAAKYGNSSPAPPAAPPKKLHRSLIFHH-QSSPPPSP-----PVKPLRR 77
           ASFSPSS S AA A      P PP  P     R L+FH+  SS PPSP     P K  RR
Sbjct: 1   ASFSPSSLSIAATAAPSYGIPYPPPLP-----RPLLFHNDHSSLPPSPAAEEYPAKSPRR 60

Query: 78  LNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 114
           +N + KDKCSE P  G++DAKPN+  +PWPKC V KSPPPPF
Sbjct: 61  VNGERKDKCSEAPRNGNKDAKPNK--DPWPKCPVPKSPPPPF 95

[Close]

BLAST of MS018033.1 vs. NCBI nr
Match: KAA0054906.1 (hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22694.1 hypothetical protein E5676_scaffold1163G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-12
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 3   AAPAACACLVLAILVASFSPSSPSRAAAAKYGNSSPAPPAAPPKKLHRSLIFHH-QSSPP 62
           A P A   L + + + SFSPSS S +A A   +  P PP  P     RSL+FH+  SS P
Sbjct: 2   APPLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLP-----RSLLFHNDHSSLP 61

Query: 63  PSP-----PVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 114
            SP     P KPL+R+N + KDKC+E P  G++DAK   S++PWPKC VSKSPPPPF
Sbjct: 62  QSPAAEEYPAKPLQRVNGERKDKCTEAPRNGNKDAK--SSKDPWPKCPVSKSPPPPF 111

[Close]

BLAST of MS018033.1 vs. ExPASy TrEMBL
Match: A0A0A0KEF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.1e-14
Identity = 61/117 (52.14%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 3   AAPAACACLVLAILVASFSPSSPSRAAAAKYGNSSPAPPAAPPKKLHRSLIFHH-QSSPP 62
           A P A   L + + VASFSPSS S AA A      P PP  P     R L+FH+  SS P
Sbjct: 2   APPLAYLFLAILLAVASFSPSSLSIAATAAPSYGIPYPPPLP-----RPLLFHNDHSSLP 61

Query: 63  PSP-----PVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 114
           PSP     P K  RR+N + KDKCSE P  G++DAKPN+  +PWPKC V KSPPPPF
Sbjct: 62  PSPAAEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNK--DPWPKCPVPKSPPPPF 111

[Close]

BLAST of MS018033.1 vs. ExPASy TrEMBL
Match: A0A5D3DGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00110 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 58/117 (49.57%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 3   AAPAACACLVLAILVASFSPSSPSRAAAAKYGNSSPAPPAAPPKKLHRSLIFHH-QSSPP 62
           A P A   L + + + SFSPSS S +A A   +  P PP  P     RSL+FH+  SS P
Sbjct: 2   APPLAYLFLAIFLAMVSFSPSSLSISATAIPSHGIPYPPPLP-----RSLLFHNDHSSLP 61

Query: 63  PSP-----PVKPLRRLNADGKDKCSEEPEYGHEDAKPNRSEEPWPKCHVSKSPPPPF 114
            SP     P KPL+R+N + KDKC+E P  G++DAK   S++PWPKC VSKSPPPPF
Sbjct: 62  QSPAAEEYPAKPLQRVNGERKDKCTEAPRNGNKDAK--SSKDPWPKCPVSKSPPPPF 111

The following BLAST results are available for this feature:

BLAST of MS018033.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646677.1	7.2e-13	54.90	hypothetical protein Csa_023590, partial [Cucumis sativus]	[more]
KAA0054906.1	3.5e-12	49.57	hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22...	[more]

BLAST of MS018033.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018033.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEF9	9.1e-14	52.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1	[more]
A0A5D3DGG9	1.7e-12	49.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS018033.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..102

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018033	MS018033	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018033.1-cds	MS018033.1-cds-scaffold1336:42079..42417	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018033.1	MS018033.1-protein	polypeptide