MS017009.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS017009.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold197: 612850 .. 613359 (-)
Sequence length	510
RNA-Seq Expression	MS017009.1
Synteny	MS017009.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGCCTCAAACTCGCGAAAATTTGGCCCAAAATCCACTCTCCCGCTCCCCCTTCGCCGCCGATCTGGACACCGGCGACCGTCTCCCGGCACCACCGGCCGTCACCGCCGATTCCGACGACGTAGGCGTCGGAGATCCCGATTTGATTCGAGAACCTAAACGCCGGAAGCACTGCCCGATGGCGCTCGAGAACCTCGACGAGTTGACGTCGGCGTCGAATTCGAGCTTCGGCTTCACCTTCGACACGAAATTCTGCGGGTTCGCGGCGGCCGAGGTCACTCCGAAATTCGGATCGTTCAACTCGATCGCGCCGGAAATCGAGAGGAAGAAGAAAGAACAGAGCTCGGTTCTGGATTCGGCGAGCGAAGTGAGAGGAGACGAAGAAGACAAAGGAGAAGCCGTACAGCAAGAAGAAGATGAAGAGGAAGAAGAAGAAATCGAAGCCGGCGACGCGTTGCGGGAAGCAATTGGAGAAGGAGGAGGAAATCTGGAATCAGTAGCGGAT

mRNA sequence

ATGGCGGAGCCTCAAACTCGCGAAAATTTGGCCCAAAATCCACTCTCCCGCTCCCCCTTCGCCGCCGATCTGGACACCGGCGACCGTCTCCCGGCACCACCGGCCGTCACCGCCGATTCCGACGACGTAGGCGTCGGAGATCCCGATTTGATTCGAGAACCTAAACGCCGGAAGCACTGCCCGATGGCGCTCGAGAACCTCGACGAGTTGACGTCGGCGTCGAATTCGAGCTTCGGCTTCACCTTCGACACGAAATTCTGCGGGTTCGCGGCGGCCGAGGTCACTCCGAAATTCGGATCGTTCAACTCGATCGCGCCGGAAATCGAGAGGAAGAAGAAAGAACAGAGCTCGGTTCTGGATTCGGCGAGCGAAGTGAGAGGAGACGAAGAAGACAAAGGAGAAGCCGTACAGCAAGAAGAAGATGAAGAGGAAGAAGAAGAAATCGAAGCCGGCGACGCGTTGCGGGAAGCAATTGGAGAAGGAGGAGGAAATCTGGAATCAGTAGCGGAT

Coding sequence (CDS)

ATGGCGGAGCCTCAAACTCGCGAAAATTTGGCCCAAAATCCACTCTCCCGCTCCCCCTTCGCCGCCGATCTGGACACCGGCGACCGTCTCCCGGCACCACCGGCCGTCACCGCCGATTCCGACGACGTAGGCGTCGGAGATCCCGATTTGATTCGAGAACCTAAACGCCGGAAGCACTGCCCGATGGCGCTCGAGAACCTCGACGAGTTGACGTCGGCGTCGAATTCGAGCTTCGGCTTCACCTTCGACACGAAATTCTGCGGGTTCGCGGCGGCCGAGGTCACTCCGAAATTCGGATCGTTCAACTCGATCGCGCCGGAAATCGAGAGGAAGAAGAAAGAACAGAGCTCGGTTCTGGATTCGGCGAGCGAAGTGAGAGGAGACGAAGAAGACAAAGGAGAAGCCGTACAGCAAGAAGAAGATGAAGAGGAAGAAGAAGAAATCGAAGCCGGCGACGCGTTGCGGGAAGCAATTGGAGAAGGAGGAGGAAATCTGGAATCAGTAGCGGAT

Protein sequence

MAEPQTRENLAQNPLSRSPFAADLDTGDRLPAPPAVTADSDDVGVGDPDLIREPKRRKHCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKKEQSSVLDSASEVRGDEEDKGEAVQQEEDEEEEEEIEAGDALREAIGEGGGNLESVAD

Homology

[Close]

BLAST of MS017009.1 vs. NCBI nr
Match: KAG6595438.1 (hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027436.1 hypothetical protein SDJN02_11449, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.5 bits (493), Expect = 7.4e-46
Identity = 126/185 (68.11%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 1   MAEPQTRENLAQNP----LSRSPF-AADLDTGDRLPAPPAV------TADSDDVGVGDPD 60
           MAEPQTRE  AQNP    LSRS F AAD D  D   APPAV       +DS DV + DPD
Sbjct: 1   MAEPQTRETFAQNPSLSILSRSSFVAADSDPADHPLAPPAVAVTVTAASDSSDVAIEDPD 60

Query: 61  LIREPKRRKHCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIE 120
           L+REPKRRKHCP ALENLDELTSASNSSF FTFDTKFCGF +AE+TPKFGSFNSIA E E
Sbjct: 61  LLREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGF-SAEITPKFGSFNSIAHETE 120

Query: 121 ---RKKKEQSSVLDSASEVRGD-EEDKGEAVQQEEDEEEEEEIEAGDALREAIGEGGGNL 171
              +KKKEQ SVLD AS VRGD EE+K ++VQ+E+D   E+EI+  DAL EAIGEG   L
Sbjct: 121 TKKKKKKEQRSVLDLASGVRGDEEEEKLDSVQREQD---EQEIKVTDALLEAIGEGREGL 180

[Close]

BLAST of MS017009.1 vs. NCBI nr
Match: KAG6604296.1 (hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034454.1 hypothetical protein SDJN02_04183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 129/187 (68.98%), Postives = 145/187 (77.54%), Query Frame = 0


Query: 1   MAEPQTRENLAQN----PLSRSPF-AADLDTGDR--LPAPPAVTADSD--DVGVGDPDLI 60
           MAEPQTREN AQN    PLSRS F AAD D G+R  +P   AV+A +D  DVG+ DPDLI
Sbjct: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLI 60

Query: 61  REPKRRKHCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIE-- 120
           REPKRRKHCP ALENLDELTSASNSSFGFTFDTKFCG  +AE+TPKFGSFNSI  E+E  
Sbjct: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCG-VSAEITPKFGSFNSIVSEMEST 120

Query: 121 -RKKKEQSSVLDSASEVRGDEEDKGEAV-----QQEEDEEEEEEIEAGDALREAIGEGGG 171
            ++KKEQ  VLDSAS+ RGDEE + E+V     ++EE+EEEEEE E  DAL EAI EGGG
Sbjct: 121 KKEKKEQRLVLDSASKTRGDEE-REESVNRGTEEEEEEEEEEEEKEVADALLEAI-EGGG 180

[Close]

BLAST of MS017009.1 vs. NCBI nr
Match: KGN54677.1 (hypothetical protein Csa_012626 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-35
Identity = 106/167 (63.47%), Postives = 117/167 (70.06%), Query Frame = 0


Query: 1   MAEPQTRENLAQN----PLSR---SPFAADLDTGDRLPAPPAVTADSDDVGVGDPDLIRE 60
           MAEPQTRENLAQN    PLSR   SP A D D  D   +PPAV        + DPDLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------LEDPDLIRE 60

Query: 61  PKRRKHCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKK 120
           PKRRKHCP ALENLDELTSASNSSF FTFDTKFCGF +AE+TPKFGSFNSIAPE+ER +K
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGF-SAEITPKFGSFNSIAPEMERNQK 120

Query: 121 EQSSVLDSASEVRGDEEDKGEAVQQEEDEEEEEEIEAGDALREAIGE 161
           +      +  EVR +EE+    V    +EEEEEEI   DAL EAI E
Sbjct: 121 K------AEREVRVEEEESVHKV----EEEEEEEIGIADALLEAINE 150

[Close]

BLAST of MS017009.1 vs. NCBI nr
Match: KAA0025819.1 (uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09637.1 uncharacterized protein E5676_scaffold447G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-32
Identity = 91/138 (65.94%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MAEPQTRENLAQN----PLSRSPF---AADLDTGDRLPAPPAVTADSDDVGVGDPDLIRE 60
           MAEPQTRENLAQN    PLSRS F   A D D  D   +PPAV        + DPDLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAP------LQDPDLIRE 60

Query: 61  PKRRKHCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKK 120
           PKRRKHCP ALENLDELTSASNSSF FTFDTKFCGF +AE+TPKFGSFNSIAPE+ER +K
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGF-SAEITPKFGSFNSIAPEMERNQK 120

Query: 121 EQSSVLDSASEVRGDEED 132
           ++        EVR +EE+
Sbjct: 121 KEE------REVRVEEEE 125

[Close]

BLAST of MS017009.1 vs. NCBI nr
Match: KAG5583307.1 (hypothetical protein H5410_053934 [Solanum commersonii])

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-14
Identity = 53/134 (39.55%), Postives = 82/134 (61.19%), Query Frame = 0


Query: 1   MAEPQTRENLAQNPLSRSPFAADLDTGDRLPAPPAVTAD--SDDVGVGDPDLIREPKRRK 60
           M  P++ +  A+N     P  ++ ++GD  P+PP  TA+   +   + DPD++R+PKRRK
Sbjct: 1   MENPKSDQAPAEN--CSDPVPSNSNSGDD-PSPP-TTAEIWEEKPEIEDPDILRQPKRRK 60

Query: 61  HCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKKEQSSV 120
           +CP AL+  D L S SN  F F+FD+KF G +  EVTPKFGSFN + P   +  K + +V
Sbjct: 61  NCPSALDKFDSLNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPKSEETV 120

Query: 121 LDSASEVRGDEEDK 133
           L+   E   D++++
Sbjct: 121 LEEEDEDDDDDDEE 130

[Close]

BLAST of MS017009.1 vs. ExPASy TrEMBL
Match: A0A0A0L245 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 106/167 (63.47%), Postives = 117/167 (70.06%), Query Frame = 0


Query: 1   MAEPQTRENLAQN----PLSR---SPFAADLDTGDRLPAPPAVTADSDDVGVGDPDLIRE 60
           MAEPQTRENLAQN    PLSR   SP A D D  D   +PPAV        + DPDLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV------LEDPDLIRE 60

Query: 61  PKRRKHCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKK 120
           PKRRKHCP ALENLDELTSASNSSF FTFDTKFCGF +AE+TPKFGSFNSIAPE+ER +K
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGF-SAEITPKFGSFNSIAPEMERNQK 120

Query: 121 EQSSVLDSASEVRGDEEDKGEAVQQEEDEEEEEEIEAGDALREAIGE 161
           +      +  EVR +EE+    V    +EEEEEEI   DAL EAI E
Sbjct: 121 K------AEREVRVEEEESVHKV----EEEEEEEIGIADALLEAINE 150

[Close]

BLAST of MS017009.1 vs. ExPASy TrEMBL
Match: A0A5D3CCB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00340 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.2e-32
Identity = 91/138 (65.94%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MAEPQTRENLAQN----PLSRSPF---AADLDTGDRLPAPPAVTADSDDVGVGDPDLIRE 60
           MAEPQTRENLAQN    PLSRS F   A D D  D   +PPAV        + DPDLIRE
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAP------LQDPDLIRE 60

Query: 61  PKRRKHCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKK 120
           PKRRKHCP ALENLDELTSASNSSF FTFDTKFCGF +AE+TPKFGSFNSIAPE+ER +K
Sbjct: 61  PKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGF-SAEITPKFGSFNSIAPEMERNQK 120

Query: 121 EQSSVLDSASEVRGDEED 132
           ++        EVR +EE+
Sbjct: 121 KEE------REVRVEEEE 125

[Close]

BLAST of MS017009.1 vs. ExPASy TrEMBL
Match: A0A0V0HAK9 (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.2e-14
Identity = 55/143 (38.46%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 1   MAEPQTRENLAQNPLSRSPFAADLDTGDRLPAPPAVTADS--DDVGVGDPDLIREPKRRK 60
           M  P++ +  A+N     P  ++ ++GD  P+PP  TA+S  +   + DPD++R+PKRRK
Sbjct: 1   MENPKSDQAPAEN--CSDPAPSNSNSGDD-PSPP-TTAESWEEKPEIEDPDILRQPKRRK 60

Query: 61  HCPMALENLDELTSASNSSFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKKEQSSV 120
           +CP AL+  D + S SN  F F+FD+KF G +  EVTPKFGSFN + P   +  K + +V
Sbjct: 61  NCPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPKSEETV 120

Query: 121 LDSASEVRGDEEDKGEAVQQEED 142
           L+   E   D++++   V  E++
Sbjct: 121 LEEEDEDDDDDDEEKPDVVVEKN 139

[Close]

BLAST of MS017009.1 vs. ExPASy TrEMBL
Match: A0A3Q7JFM8 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101250353 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 19  PFAADLDTGDRLPAPPAVTADS--DDVGVGDPDLIREPKRRKHCPMALENLDELTSASNS 78
           P  ++ ++GD  P+PP  TA+S  +   + DPD+IR+ KRRK+CP AL+  D + S SN 
Sbjct: 17  PAPSNSNSGDD-PSPP-TTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSVNSGSNF 76

Query: 79  SFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKKEQSSVLDSASEVRGDEEDKGEAV 138
            F F+FD+KF G +  EVTPKFGSFN + P   +  K + +VL+   E   DEE+K + V
Sbjct: 77  GFSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPKSEETVLEVEDE---DEEEKPDVV 134

Query: 139 QQE 140
            ++
Sbjct: 137 VEK 134

[Close]

BLAST of MS017009.1 vs. ExPASy TrEMBL
Match: A0A6N2B8K2 (Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_018659 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.1e-13
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 19  PFAADLDTGDRLPAPPAVTADS--DDVGVGDPDLIREPKRRKHCPMALENLDELTSASNS 78
           P  ++ ++GD  P+PP  TA+S  +   + DPD+IR+ KRRK+CP AL+  D + S SN 
Sbjct: 17  PAPSNSNSGDD-PSPP-TTAESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDCVNSGSNF 76

Query: 79  SFGFTFDTKFCGFAAAEVTPKFGSFNSIAPEIERKKKEQSSVLDSASEVRGDEEDKGEAV 138
            F F+FD+KF G +  EVTPKFGSFN + P   +  K + +VL+   E   DEE+K + V
Sbjct: 77  GFSFSFDSKFSGCSTPEVTPKFGSFNRVKPGSTKDPKSEETVLEVEDE---DEEEKPDVV 134

Query: 139 QQE 140
            ++
Sbjct: 137 VEK 134

The following BLAST results are available for this feature:

BLAST of MS017009.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595438.1	7.4e-46	68.11	hypothetical protein SDJN03_11991, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6604296.1	1.1e-44	68.98	hypothetical protein SDJN03_04905, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN54677.1	3.4e-35	63.47	hypothetical protein Csa_012626 [Cucumis sativus]	[more]
KAA0025819.1	4.6e-32	65.94	uncharacterized protein E6C27_scaffold34G00730 [Cucumis melo var. makuwa] >TYK09...	[more]
KAG5583307.1	2.0e-14	39.55	hypothetical protein H5410_053934 [Solanum commersonii]	[more]

BLAST of MS017009.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS017009.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245	1.7e-35	63.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1	[more]
A0A5D3CCB2	2.2e-32	65.94	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0V0HAK9	6.2e-14	38.46	Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1	[more]
A0A3Q7JFM8	1.0e-13	43.09	Uncharacterized protein OS=Solanum lycopersicum OX=4081 GN=101250353 PE=4 SV=1	[more]
A0A6N2B8K2	3.1e-13	43.09	Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_018659 PE=4 SV=1	[more]

BLAST of MS017009.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 136..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..170

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS017009	MS017009	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS017009.1-cds	MS017009.1-cds-scaffold197:612850..613359	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS017009.1	MS017009.1-protein	polypeptide