MS016566.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS016566.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF1191)
Location	scaffold1294: 126313 .. 126604 (-)
Sequence length	291
RNA-Seq Expression	MS016566.1
Synteny	MS016566.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTACGACCGAAGACAGGGCTTCCCTACGACGGGAATGTGCCGTCAAATATGACGGTGATTAAGATTGCAGCAATGCGGGTGAGGAGTGGTAGCTTAAGAAGTAGAGGCGTGAGCAGGTACAAGGAGTTTGTTTGTGAAGCCATATGTGCAGAGGGTTGCTTTAGTTTACCAGAATTTGGGCAATTGGTCGCAACACTATTACCCCTTGGCCTTGCCTATGCCTGGTTACACATACCTGGCTCCGGTGTTGGGTCTTCTAGCCTACAATGCTTCCCAATTATCTGCCTCCTCC

mRNA sequence

GTACGACCGAAGACAGGGCTTCCCTACGACGGGAATGTGCCGTCAAATATGACGGTGATTAAGATTGCAGCAATGCGGGTGAGGAGTGGTAGCTTAAGAAGTAGAGGCGTGAGCAGGTACAAGGAGTTTGTTGTGAAGCCATATGTGCAGAGGGTTGCTTTAGTTTACCAGAATTTGGGCAATTGGTCGCAACACTATTACCCCTTGGCCTTGCCTATGCCTGGTTACACATACCTGGCTCCGGTGTTGGGTCTTCTAGCCTACAATGCTTCCCAATTATCTGCCTCCTCC

Coding sequence (CDS)

GTACGACCGAAGACAGGGCTTCCCTACGACGGGAATGTGCCGTCAAATATGACGGTGATTAAGATTGCAGCAATGCGGGTGAGGAGTGGTAGCTTAAGAAGTAGAGGCGTGAGCAGGTACAAGGAGTTTGTTGTGAAGCCATATGTGCAGAGGGTTGCTTTAGTTTACCAGAATTTGGGCAATTGGTCGCAACACTATTACCCCTTGGCCTTGCCTATGCCTGGTTACACATACCTGGCTCCGGTGTTGGGTCTTCTAGCCTACAATGCTTCCCAATTATCTGCCTCCTCC

Protein sequence

VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEFVVKPYVQRVALVYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS

Homology

[Close]

BLAST of MS016566.1 vs. NCBI nr
Match: KAG6771755.1 (hypothetical protein POTOM_023147 [Populus tomentosa])

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 46  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVRPYVERVVL 105

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS  YYPL    PGYTY+APVLGLLAYNAS L+A++
Sbjct: 106 VYQNLGNWSGRYYPL----PGYTYIAPVLGLLAYNASNLTATN 144

[Close]

BLAST of MS016566.1 vs. NCBI nr
Match: XP_006381269.1 (uncharacterized protein LOC18100024 isoform X1 [Populus trichocarpa] >PNT30999.1 hypothetical protein POPTR_006G111700 [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 46  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVQPYVERVVL 105

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS+ YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 106 VYQNLGNWSRRYYPL----PGYTYIAPVLGLLAYDASNLSATN 144

[Close]

BLAST of MS016566.1 vs. NCBI nr
Match: XP_024458554.1 (uncharacterized protein LOC18100024 isoform X2 [Populus trichocarpa] >PNT30998.1 hypothetical protein POPTR_006G111700 [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 2.5e-30
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 38  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVQPYVERVVL 97

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS+ YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 98  VYQNLGNWSRRYYPL----PGYTYIAPVLGLLAYDASNLSATN 136

[Close]

BLAST of MS016566.1 vs. NCBI nr
Match: XP_034913748.1 (uncharacterized protein LOC118048252 isoform X1 [Populus alba] >TKS13281.1 uncharacterized protein D5086_0000055940 [Populus alba])

HSP 1 Score: 141.4 bits (355), Expect = 4.2e-30
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 46  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVRPYVERVVL 105

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS  YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 106 VYQNLGNWSGRYYPL----PGYTYIAPVLGLLAYDASNLSATN 144

[Close]

BLAST of MS016566.1 vs. NCBI nr
Match: XP_011006267.1 (PREDICTED: uncharacterized protein LOC105112300 [Populus euphratica] >XP_011006268.1 PREDICTED: uncharacterized protein LOC105112300 [Populus euphratica])

HSP 1 Score: 141.4 bits (355), Expect = 4.2e-30
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           VRP+TG+PYDG VPSN+T IKIAAMR+RSGSLR RGV  YKEF      VV+PYV+R+ L
Sbjct: 46  VRPRTGIPYDGTVPSNLTGIKIAAMRLRSGSLRRRGVKMYKEFGIPEGVVVRPYVERLVL 105

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS  YYPL    PGY YLAPVLGLLAYNA  LSA++
Sbjct: 106 VYQNLGNWSLTYYPL----PGYAYLAPVLGLLAYNAINLSATN 144

[Close]

BLAST of MS016566.1 vs. ExPASy TrEMBL
Match: B9MTT5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G111700 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 46  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVQPYVERVVL 105

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS+ YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 106 VYQNLGNWSRRYYPL----PGYTYIAPVLGLLAYDASNLSATN 144

[Close]

BLAST of MS016566.1 vs. ExPASy TrEMBL
Match: A0A2K2A0E6 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G111700 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 38  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVQPYVERVVL 97

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS+ YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 98  VYQNLGNWSRRYYPL----PGYTYIAPVLGLLAYDASNLSATN 136

[Close]

BLAST of MS016566.1 vs. ExPASy TrEMBL
Match: A0A6M2EGV5 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 46  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVRPYVERVVL 105

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS  YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 106 VYQNLGNWSGRYYPL----PGYTYIAPVLGLLAYDASNLSATN 144

[Close]

BLAST of MS016566.1 vs. ExPASy TrEMBL
Match: A0A4U5QRZ8 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000055940 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   VRPKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVAL 60
           V P+TG+PYDG VPSN+T IKIAAMR+RSGSL+SRGV  YKEF      VV+PYV+RV L
Sbjct: 46  VLPRTGIPYDGIVPSNLTGIKIAAMRLRSGSLKSRGVRMYKEFGIPEGVVVRPYVERVVL 105

Query: 61  VYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           VYQNLGNWS  YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 106 VYQNLGNWSGRYYPL----PGYTYIAPVLGLLAYDASNLSATN 144

[Close]

BLAST of MS016566.1 vs. ExPASy TrEMBL
Match: A0A5N5MAR2 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_009576 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 3   PKTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEFV------VKPYVQRVALVY 62
           P+TG+PY+G VPSN+T IKIAAMR+RSGSLR RGV  Y+EFV      V PYV+RV LVY
Sbjct: 48  PRTGIPYEGIVPSNLTGIKIAAMRLRSGSLRVRGVQMYREFVIPKGVSVHPYVERVVLVY 107

Query: 63  QNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSASS 98
           QNLGNWSQ YYPL    PGYTY+APVLGLLAY+AS LSA++
Sbjct: 108 QNLGNWSQRYYPL----PGYTYIAPVLGLLAYDASNLSATN 144

[Close]

BLAST of MS016566.1 vs. TAIR 10
Match: AT3G08600.1 (Protein of unknown function (DUF1191) )

HSP 1 Score: 110.9 bits (276), Expect = 5.7e-25
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   VRPKTGLPYDG-NVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVA 60
           +RP+TG+ Y+   VPSN+T IK+AAMR+RSGS R RGV+ + EF      +VKPYV R+ 
Sbjct: 50  LRPRTGILYEATTVPSNLTGIKLAAMRLRSGSFRKRGVTPFNEFSIPSGVIVKPYVTRLV 109

Query: 61  LVYQNLGNWSQHYYPLALPMPGYTYLAPVLGLLAYNASQLSA 96
           LVYQNL N+S  YYPL+    GY Y+APVLGLLAY+A  LSA
Sbjct: 110 LVYQNLANFSHLYYPLS----GYDYVAPVLGLLAYDAKNLSA 147

[Close]

BLAST of MS016566.1 vs. TAIR 10
Match: AT4G11950.1 (Protein of unknown function (DUF1191) )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 4   KTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVALVYQ 63
           KTG     ++PSN + I IA  + R GSLR  G +R  EF       V+P V+RV LV Q
Sbjct: 46  KTGAIQKVHLPSNFSSIDIATAKFRCGSLRRHG-ARIGEFHLGPGLTVEPCVERVILVRQ 105

Query: 64  NLG-NWSQHYYPLALPMPGYTY--LAPVLGLLAYNAS 92
           NLG NWS + Y     + GY Y  ++PVLGLLAYN++
Sbjct: 106 NLGFNWSSYIYSTGYNLTGYKYRLVSPVLGLLAYNSN 141

[Close]

BLAST of MS016566.1 vs. TAIR 10
Match: AT1G62981.1 (Protein of unknown function (DUF1191) )

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 4   KTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVALVYQ 63
           KTG+    ++PS+ + IK+ A+R R GSLR  G ++ +EF      +++P  +R+ +V Q
Sbjct: 66  KTGVIRRVHLPSDYSGIKLDAVRFRCGSLRRYG-AKIEEFNIGVGAILEPCGERLLVVRQ 125

Query: 64  NLGN-WSQHYYPLALPMPGYTYLAPVLGLLAYNA 91
           +LG+ WS  YY     + GY  ++PVLGLLAYNA
Sbjct: 126 SLGSKWSDIYYK-NYDLSGYRLVSPVLGLLAYNA 157

[Close]

BLAST of MS016566.1 vs. TAIR 10
Match: AT1G62981.2 (Protein of unknown function (DUF1191) )

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-09
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 4   KTGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVALVYQ 63
           KTG+    ++PS+ + IK+ A+R R GSLR  G ++ +EF      +++P  +R+ +V Q
Sbjct: 66  KTGVIRRVHLPSDYSGIKLDAVRFRCGSLRRYG-AKIEEFNIGVGAILEPCGERLLVVRQ 125

Query: 64  NLGN-WSQHYYPLALPMPGYTYLAPVLGLLAYNA 91
           +LG+ WS  YY     + GY  ++PVLGLLAYNA
Sbjct: 126 SLGSKWSDIYYK-NYDLSGYRLVSPVLGLLAYNA 157

[Close]

BLAST of MS016566.1 vs. TAIR 10
Match: AT4G22900.1 (Protein of unknown function (DUF1191) )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 5   TGLPYDGNVPSNMTVIKIAAMRVRSGSLRSRGVSRYKEF------VVKPYVQRVALVYQN 64
           TG+     +PSN + I I  +++R GSLR  G ++  EF       V+P  +RV L+ QN
Sbjct: 49  TGVTQKIYLPSNFSGIDIDTVKLRCGSLRRYG-AKIGEFHIGSGLTVEPCPERVMLIRQN 108

Query: 65  LG-NWSQHYYPLALPMPGYTY--LAPVLGLLAYNAS 92
            G NWS   Y     + GY Y  ++PVLGLLAYNA+
Sbjct: 109 FGSNWSS-IYSTGYNLSGYNYKLVSPVLGLLAYNAN 142

The following BLAST results are available for this feature:

BLAST of MS016566.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6771755.1	2.5e-30	70.87	hypothetical protein POTOM_023147 [Populus tomentosa]	[more]
XP_006381269.1	2.5e-30	70.87	uncharacterized protein LOC18100024 isoform X1 [Populus trichocarpa] >PNT30999.1...	[more]
XP_024458554.1	2.5e-30	70.87	uncharacterized protein LOC18100024 isoform X2 [Populus trichocarpa] >PNT30998.1...	[more]
XP_034913748.1	4.2e-30	70.87	uncharacterized protein LOC118048252 isoform X1 [Populus alba] >TKS13281.1 uncha...	[more]
XP_011006267.1	4.2e-30	70.87	PREDICTED: uncharacterized protein LOC105112300 [Populus euphratica] >XP_0110062...	[more]

BLAST of MS016566.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016566.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B9MTT5	1.2e-30	70.87	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G111700 PE=4 ...	[more]
A0A2K2A0E6	1.2e-30	70.87	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G111700 PE=4 ...	[more]
A0A6M2EGV5	2.0e-30	70.87	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A4U5QRZ8	2.0e-30	70.87	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000055940 PE=4 SV=1	[more]
A0A5N5MAR2	1.7e-29	70.30	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_009576 PE=4 SV=1	[more]

BLAST of MS016566.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08600.1	5.7e-25	58.82	Protein of unknown function (DUF1191)	[more]
AT4G11950.1	1.9e-12	46.39	Protein of unknown function (DUF1191)	[more]
AT1G62981.1	2.0e-09	41.49	Protein of unknown function (DUF1191)	[more]
AT1G62981.2	2.0e-09	41.49	Protein of unknown function (DUF1191)	[more]
AT4G22900.1	1.7e-08	41.67	Protein of unknown function (DUF1191)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010605	Protein of unknown function DUF1191	PFAM	PF06697	DUF1191	coord: 2..96 e-value: 5.8E-32 score: 110.9
IPR010605	Protein of unknown function DUF1191	PANTHER	PTHR33512	PROTEIN, PUTATIVE (DUF1191)-RELATED	coord: 1..96
None	No IPR available	PANTHER	PTHR33512:SF14	EXPRESSED PROTEIN	coord: 1..96

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS016566	MS016566	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS016566.1-cds	MS016566.1-cds-scaffold1294:126313..126471	CDS
MS016566.1-cds	MS016566.1-cds-scaffold1294:126473..126604	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS016566.1	MS016566.1-protein	polypeptide