MS015348.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS015348.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Clavata3/esr-related 43, putative
Location	scaffold2: 2755151 .. 2755426 (-)
Sequence length	276
RNA-Seq Expression	MS015348.1
Synteny	MS015348.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACCAGAAGAAGCGCCGCCGTCTCCTCCTCCGCCTCTTCTTTTGCCATTCTAATCTTGATCCTCTGGGTGTCGCAGATTTGGGTCTGCTCCCACTGCCAAGCTAGAGCTTCTCGGATTCTCCCGCCGCCGCTCACCGGCGACGCAAAACACGATGCCAGCGGCAAAAATGAACTTGTCCAGAAATATTTGAGAGGAAGAGCTTCCGATCGCCACGAAGGATTCGAAGACAGCAAACGGAGAGTACCCAGTTGTCCAGATCCTCTCCACAAT

mRNA sequence

ATGTGTACCAGAAGAAGCGCCGCCGTCTCCTCCTCCGCCTCTTCTTTTGCCATTCTAATCTTGATCCTCTGGGTGTCGCAGATTTGGGTCTGCTCCCACTGCCAAGCTAGAGCTTCTCGGATTCTCCCGCCGCCGCTCACCGGCGACGCAAAACACGATGCCAGCGGCAAAAATGAACTTGTCCAGAAATATTTGAGAGGAAGAGCTTCCGATCGCCACGAAGGATTCGAAGACAGCAAACGGAGAGTACCCAGTTGTCCAGATCCTCTCCACAAT

Coding sequence (CDS)

ATGTGTACCAGAAGAAGCGCCGCCGTCTCCTCCTCCGCCTCTTCTTTTGCCATTCTAATCTTGATCCTCTGGGTGTCGCAGATTTGGGTCTGCTCCCACTGCCAAGCTAGAGCTTCTCGGATTCTCCCGCCGCCGCTCACCGGCGACGCAAAACACGATGCCAGCGGCAAAAATGAACTTGTCCAGAAATATTTGAGAGGAAGAGCTTCCGATCGCCACGAAGGATTCGAAGACAGCAAACGGAGAGTACCCAGTTGTCCAGATCCTCTCCACAAT

Protein sequence

MCTRRSAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPPPLTGDAKHDASGKNELVQKYLRGRASDRHEGFEDSKRRVPSCPDPLHN

Homology

[Close]

BLAST of MS015348.1 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MCTRRSAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPPPLTGDAKHDASGKNEL 60
          MCTRR AAVSSSASSFAILILILWVSQIWVC HCQARASRILPPPLTGDAKHDASGKNEL
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL 60

Query: 61 VQKYLRGRASDRHEGFEDSKRRVPSCPD 89
          VQKYLRGRASDRHEGFEDSKRRVPSC D
Sbjct: 61 VQKYLRGRASDRHEGFEDSKRRVPSCSD 88

[Close]

BLAST of MS015348.1 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 70/105 (66.67%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MCTRRSAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPPP--------LTGDAKH 60
           MCTRR A  +SS+SSFA+LI ILWVSQIWVCSHCQARASRI PPP        LTGD K+
Sbjct: 1   MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 60

Query: 61  --DASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 93
             +A+ + EL++KY +G+A DRH   EGFEDSKRR+PSCPDPLHN
Sbjct: 61  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of MS015348.1 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 70/105 (66.67%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MCTRRSAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPPP--------LTGDAKH 60
           MCTRR A  +SS+SSFA+LI ILWVSQIWVCSHCQARASRI PPP        LTGD K+
Sbjct: 12  MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 71

Query: 61  --DASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 93
             +A+ + EL++KY +G+A DRH   EGFEDSKRR+PSCPDPLHN
Sbjct: 72  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of MS015348.1 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 6   SAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPPP------------LTGDAKHD 65
           +++ SSS S+FAILILILWVSQIWVC HCQARASRI PPP            L+G+ K +
Sbjct: 8   TSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN 67

Query: 66  ASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 93
           A  KN+L+QKY  GRA DRH   EGFEDSKR++PSCPDPLHN
Sbjct: 68  A--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of MS015348.1 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 9.3e-19
Identity = 62/104 (59.62%), Postives = 69/104 (66.35%), Query Frame = 0


Query: 1   MCTRRSAAVSSSASSFAILILILWVSQIWV-CSHCQARASRIL-------PPPLTGDAKH 60
           MCTRR AA    +SSFAILILILWVSQIWV C   QARASRI        PPP T D   
Sbjct: 1   MCTRRIAA----SSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTD 60

Query: 61  DASGKNELVQKYLRGRA----SDRHEGFEDSKRRVPSCPDPLHN 93
            A+ + EL+QKY + RA       HEGF DSKR++PSCPDPLHN
Sbjct: 61  HANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of MS015348.1 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MCTRRSAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPPPLTGDAKHDASGKNEL 60
          MCTRR AAVSSSASSFAILILILWVSQIWVC HCQARASRILPPPLTGDAKHDASGKNEL
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL 60

Query: 61 VQKYLRGRASDRHEGFEDSKRRVPSCPD 89
          VQKYLRGRASDRHEGFEDSKRRVPSC D
Sbjct: 61 VQKYLRGRASDRHEGFEDSKRRVPSCSD 88

[Close]

BLAST of MS015348.1 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.2e-25
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 6   SAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPPP------------LTGDAKHD 65
           +++ SSS S+FAILILILWVSQIWVC HCQARASRI PPP            L+G+ K +
Sbjct: 8   TSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDN 67

Query: 66  ASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 93
           A  KN+L+QKY  GRA DRH   EGFEDSKR++PSCPDPLHN
Sbjct: 68  A--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of MS015348.1 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.7e-11
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 15 SFAILILILWVSQIWVCSHCQARASRILP-----PPLTGDAKHDASGKNELVQKYLRGRA 74
          S  +++LI++  QIWVC  C+A A RILP              D  GK +L QKY  GR+
Sbjct: 14 SSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTESQGMKDNKGKGDLFQKYFNGRS 73

Query: 75 ---SDRHEGFEDSKRRVPSCPDPLHN 93
             +    GFE+SKRRVPSCPDPLHN
Sbjct: 74 FSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of MS015348.1 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 3   TRRSAAVSSSASSFAILILILWVSQIWVCSHCQARASRILPP-PLTGDAKH-------DA 62
           +RRS   SSS    A+++ ++++ QIWVCS C+A A RI P   +    KH       + 
Sbjct: 6   SRRSIMYSSSL--VALVVFLIFMLQIWVCSDCKAGAIRIFPDNGMPSKLKHRNITTTDNK 65

Query: 63  SGKNELVQKYLRGRAS---DRHEGFEDSKRRVPSCPDPLHN 93
           + K +L++K+  GRAS      +GFE++KRRVPSCPDPLHN
Sbjct: 66  ATKQDLLRKFFNGRASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of MS015348.1 vs. ExPASy TrEMBL
Match: A0A7J9GML7 (Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_009374 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.5e-10
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 18 ILILILWVSQIWVCSHCQARASRILPPPLTGDAKHDASGKNELVQKYLRG-----RASDR 77
          +++LI+ V QIW+CS C+A A+R+ P    G+       + EL Q Y  G     + SD+
Sbjct: 2  VVMLIISVLQIWICSDCRAGATRVFP----GNEMRKMIERQELFQTYFNGTSFSFKGSDK 61

Query: 78 HEGFEDSKRRVPSCPDPLHN 93
            GFEDSKRRVPSCPDPLHN
Sbjct: 62 --GFEDSKRRVPSCPDPLHN 75

[Close]

BLAST of MS015348.1 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 41.2 bits (95), Expect = 5.3e-04
Identity = 28/93 (30.11%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 15 SFAILILILWVSQIWVCSHCQARASRILP------------PPLTGDAKHDASGKNELVQ 74
          +F++ +L++ + QIW+      R  R +P              +T   K+       L Q
Sbjct: 9  TFSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQ 68

Query: 75 KYLRGRA---SDRHEGFEDSKRRVPSCPDPLHN 93
          +Y +GR+   ++ +  FEDS RR+PS PD LHN
Sbjct: 69 RYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

The following BLAST results are available for this feature:

BLAST of MS015348.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150497.1	2.1e-39	96.59	uncharacterized protein LOC111018633 [Momordica charantia]	[more]
KAG7032076.1	1.9e-27	66.67	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	1.9e-27	66.67	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN52083.1	1.5e-24	63.73	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG6573960.1	9.3e-19	59.62	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of MS015348.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS015348.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAV9	1.0e-39	96.59	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0KR66	7.2e-25	63.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A061E6F8	7.7e-11	47.67	Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ...	[more]
A0A2C9VNI0	2.2e-10	43.56	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A7J9GML7	8.5e-10	48.75	Uncharacterized protein OS=Gossypium harknessii OX=34285 GN=Gohar_009374 PE=4 SV...	[more]

BLAST of MS015348.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25425.1	5.3e-04	30.11	CLAVATA3/ESR-RELATED 43	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..92
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 10..92
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 10..92

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS015348	MS015348	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS015348.1-cds	MS015348.1-cds-scaffold2:2755151..2755426	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS015348.1	MS015348.1-protein	polypeptide