MS013710.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013710.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	translocator protein homolog
Location	scaffold263: 368938 .. 369489 (-)
Sequence length	552
RNA-Seq Expression	MS013710.1
Synteny	MS013710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCCCCGACCTCAAACACCGCAAACCAACAGAATCAGACGATTCCGCCACCGCCACCGCCCCCGCCCGGAAGCCCACCGCCACCGCCAGACGAGGCCTCAAATCTCTAGCCGTCGCCGTCTCCGTCCCCGTTTCCCTCTCCCTCCTCGCCGTCTACCTCCTCTCCGACCCCACCAAATTCCCCCCCTCATCTCCGAAACCCTTCTGGTTTCCCTCCGCCGCCGCCGTGAATCTCGGCTCCTTCGCCTCCAGCCTCCTCATGGGCGCCGCCGCCTGGCTCGTCTGGGCCGACGGCGGCTTCCACTCCACGCCCAATGCTCTCTATCTCTACACTCTCTACTTCCTCCTCTGTTTCACCTGGTACGGTCTCCTCCTCGGGGCCGGCGCGCCCCGCCTCGCTGCGGTGGCGTGCCTCGCCAAGACGGCGGCGCTCGTCGGCTGTGACCGGTTGTTCCGGCGAGTGAATCCCATCGCCGCGGATTTGGTTAAGCCGTGCTTGGCTTGGTCCGTTTTTCTTACCGTTGTCAATCTTACCATGGTTGCTCAA

mRNA sequence

ATGGCCTCCCCCGACCTCAAACACCGCAAACCAACAGAATCAGACGATTCCGCCACCGCCACCGCCCCCGCCCGGAAGCCCACCGCCACCGCCAGACGAGGCCTCAAATCTCTAGCCGTCGCCGTCTCCGTCCCCGTTTCCCTCTCCCTCCTCGCCGTCTACCTCCTCTCCGACCCCACCAAATTCCCCCCCTCATCTCCGAAACCCTTCTGGTTTCCCTCCGCCGCCGCCGTGAATCTCGGCTCCTTCGCCTCCAGCCTCCTCATGGGCGCCGCCGCCTGGCTCGTCTGGGCCGACGGCGGCTTCCACTCCACGCCCAATGCTCTCTATCTCTACACTCTCTACTTCCTCCTCTGTTTCACCTGGTACGGTCTCCTCCTCGGGGCCGGCGCGCCCCGCCTCGCTGCGGTGGCGTGCCTCGCCAAGACGGCGGCGCTCGTCGGCTGTGACCGGTTGTTCCGGCGAGTGAATCCCATCGCCGCGGATTTGGTTAAGCCGTGCTTGGCTTGGTCCGTTTTTCTTACCGTTGTCAATCTTACCATGGTTGCTCAA

Coding sequence (CDS)

ATGGCCTCCCCCGACCTCAAACACCGCAAACCAACAGAATCAGACGATTCCGCCACCGCCACCGCCCCCGCCCGGAAGCCCACCGCCACCGCCAGACGAGGCCTCAAATCTCTAGCCGTCGCCGTCTCCGTCCCCGTTTCCCTCTCCCTCCTCGCCGTCTACCTCCTCTCCGACCCCACCAAATTCCCCCCCTCATCTCCGAAACCCTTCTGGTTTCCCTCCGCCGCCGCCGTGAATCTCGGCTCCTTCGCCTCCAGCCTCCTCATGGGCGCCGCCGCCTGGCTCGTCTGGGCCGACGGCGGCTTCCACTCCACGCCCAATGCTCTCTATCTCTACACTCTCTACTTCCTCCTCTGTTTCACCTGGTACGGTCTCCTCCTCGGGGCCGGCGCGCCCCGCCTCGCTGCGGTGGCGTGCCTCGCCAAGACGGCGGCGCTCGTCGGCTGTGACCGGTTGTTCCGGCGAGTGAATCCCATCGCCGCGGATTTGGTTAAGCCGTGCTTGGCTTGGTCCGTTTTTCTTACCGTTGTCAATCTTACCATGGTTGCTCAA

Protein sequence

MASPDLKHRKPTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYTLYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLTMVAQ

Homology

[Close]

BLAST of MS013710.1 vs. NCBI nr
Match: XP_022151009.1 (translocator protein homolog [Momordica charantia])

HSP 1 Score: 350.1 bits (897), Expect = 1.1e-92
Identity = 182/184 (98.91%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLSDPT 60
           MASPDLKHRKPTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLSDPT
Sbjct: 1   MASPDLKHRKPTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLSDPT 60

Query: 61  KFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYTLYFLLCF 120
           KFPPSSPKPFWFPSAAAVNLGSFASSLLMGAA WLVWADGGFHSTPNALYLYTLY LLCF
Sbjct: 61  KFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYTLYVLLCF 120

Query: 121 TWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLT 180
           TWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLT
Sbjct: 121 TWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLT 180

Query: 181 MVAQ 185
           MVAQ
Sbjct: 181 MVAQ 184

[Close]

BLAST of MS013710.1 vs. NCBI nr
Match: XP_038897197.1 (translocator protein homolog [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 4.5e-57
Identity = 125/192 (65.10%), Postives = 149/192 (77.60%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPA--------RKPTATARRGLKSLAVAVSVPVSLSLLA 60
           MAS +LKHRK   +DDS++ T PA         K  A  +RGLKSLA+A+++P+SL+LL+
Sbjct: 1   MASTELKHRK---TDDSSSPTVPAADNGGAKKAKNKAITKRGLKSLALAITIPMSLTLLS 60

Query: 61  VYLLSDPTK-FPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYL 120
           V+LLS+P   +P S+ +PFW PSA  VN GS  SSLLMG AAWLVWA+GGFH+ PNALYL
Sbjct: 61  VFLLSNPKNYYPASAARPFWIPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHAKPNALYL 120

Query: 121 YTLYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWS 180
           Y+LY  LC  WY L+ GAGA RL ++ACL KTAALVGCDRLFR VNPIAADLVKPCL WS
Sbjct: 121 YSLYLALCVAWYALVFGAGARRLGSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWS 180

Query: 181 VFLTVVNLTMVA 184
           VFLTVVNLTMV+
Sbjct: 181 VFLTVVNLTMVS 189

[Close]

BLAST of MS013710.1 vs. NCBI nr
Match: KAA0068008.1 (translocator protein-like protein [Cucumis melo var. makuwa] >TYK18119.1 translocator protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-53
Identity = 120/190 (63.16%), Postives = 141/190 (74.21%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPARKPTATAR------RGLKSLAVAVSVPVSLSLLAVY 60
           MAS DLKHRK  +S  ++T TA     T  AR      RGL+SLA+A+S+PVSL+LL ++
Sbjct: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIF 60

Query: 61  LLSDPTK-FPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYT 120
           L S+    +P S+ +PFW PS   VN GS  SSLLMG AAWLVWA+GGFHS PNALYLY 
Sbjct: 61  LFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120

Query: 121 LYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180
           LY +L   WY L+ GAGA RL+++ACL KTAALVGCDRLFR VNPIAADLVKPCL WSV 
Sbjct: 121 LYLVLSLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180

Query: 181 LTVVNLTMVA 184
           LTVVNLTM +
Sbjct: 181 LTVVNLTMAS 190

[Close]

BLAST of MS013710.1 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 218.8 bits (556), Expect = 4.0e-53
Identity = 118/190 (62.11%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 1   MASPDLKHRK-------PTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAV 60
           MAS +LKHR        P  +D+ +T  A   K  A A+RGLKSLAVAVS+P++++LL++
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRA---KNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  YLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYT 120
            LLS P  + PS+ KPFW PSA  VN GS ASSLLMG ++WL WA+GGF + PNALYLYT
Sbjct: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120

Query: 121 LYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180
           LY +LC  WYGL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PCL WSVF
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTMVA 184
           LT+V+LTMV+
Sbjct: 181 LTIVSLTMVS 187

[Close]

BLAST of MS013710.1 vs. NCBI nr
Match: KAG6575839.1 (Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.8 bits (556), Expect = 4.0e-53
Identity = 118/190 (62.11%), Postives = 142/190 (74.74%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPA-------RKPTATARRGLKSLAVAVSVPVSLSLLAV 60
           MAS +LKHR   +S     A A A        K  A A+RGLKSLAVAVS+P++++LL++
Sbjct: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  YLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYT 120
            LL+ P  + PS+ KPFW PSA  VN GS ASSLLMG ++WL WA+GGF + PNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180
           LY +LC  WYGL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PCL WSVF
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTMVA 184
           LT+V+LTMVA
Sbjct: 181 LTIVSLTMVA 190

[Close]

BLAST of MS013710.1 vs. ExPASy Swiss-Prot
Match: O82245 (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-29
Identity = 77/193 (39.90%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPARKPT------------ATARRGLKSLAVAVSVPVSL 60
           M S D+++R   + D + TA A   + +            A A+RGLKSL VAV+ PV +
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  SLLAVYLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNA 120
           +L A Y L     +   +    W P    ++    ASS LMG AAWLVW DGGFH  PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCL 180
           LYLY   FLLC  W  +    G+        L ++AAL GC + F  ++P+A +LVKPCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 AWSVFLTVVNLTM 182
           AW+ F+  VN+ +
Sbjct: 181 AWAAFVAAVNVKL 193

[Close]

BLAST of MS013710.1 vs. ExPASy TrEMBL
Match: A0A6J1DBR2 (translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.5e-93
Identity = 182/184 (98.91%), Postives = 182/184 (98.91%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLSDPT 60
           MASPDLKHRKPTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLSDPT
Sbjct: 1   MASPDLKHRKPTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLLSDPT 60

Query: 61  KFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYTLYFLLCF 120
           KFPPSSPKPFWFPSAAAVNLGSFASSLLMGAA WLVWADGGFHSTPNALYLYTLY LLCF
Sbjct: 61  KFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYTLYVLLCF 120

Query: 121 TWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLT 180
           TWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLT
Sbjct: 121 TWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLT 180

Query: 181 MVAQ 185
           MVAQ
Sbjct: 181 MVAQ 184

[Close]

BLAST of MS013710.1 vs. ExPASy TrEMBL
Match: A0A0A0KAU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.5e-55
Identity = 121/190 (63.68%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATA------PARKPTATARRGLKSLAVAVSVPVSLSLLAVY 60
           MAS DLKHRK  +S  ++T +A         K    A+RGL+SLA+A+S+PVSL+L  + 
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LLSDPTK-FPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYT 120
           L S+    +P S+PKPFW PSA  VN GS  SSLLMG AAWLVWA+GGFH+ PNALYLY 
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180
           LY +LC TWY L+ GAGA RL+A+ACL KTAALVGCDRLFR VNP+AADLVKPCL WSV 
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTVVNLTMVA 184
           LTVVNLT+V+
Sbjct: 181 LTVVNLTVVS 190

[Close]

BLAST of MS013710.1 vs. ExPASy TrEMBL
Match: A0A5A7VJL5 (Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00470 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.6e-54
Identity = 120/190 (63.16%), Postives = 141/190 (74.21%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPARKPTATAR------RGLKSLAVAVSVPVSLSLLAVY 60
           MAS DLKHRK  +S  ++T TA     T  AR      RGL+SLA+A+S+PVSL+LL ++
Sbjct: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIF 60

Query: 61  LLSDPTK-FPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYT 120
           L S+    +P S+ +PFW PS   VN GS  SSLLMG AAWLVWA+GGFHS PNALYLY 
Sbjct: 61  LFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120

Query: 121 LYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180
           LY +L   WY L+ GAGA RL+++ACL KTAALVGCDRLFR VNPIAADLVKPCL WSV 
Sbjct: 121 LYLVLSLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180

Query: 181 LTVVNLTMVA 184
           LTVVNLTM +
Sbjct: 181 LTVVNLTMAS 190

[Close]

BLAST of MS013710.1 vs. ExPASy TrEMBL
Match: A0A6J1JZC9 (translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.9e-53
Identity = 118/190 (62.11%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 1   MASPDLKHRK-------PTESDDSATATAPARKPTATARRGLKSLAVAVSVPVSLSLLAV 60
           MAS +LKHR        P  +D+ +T  A   K  A A+RGLKSLAVAVS+P++++LL++
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSTKRA---KNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  YLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYT 120
            LLS P  + PS+ KPFW PSA  VN GS ASSLLMG ++WL WA+GGF + PNALYLYT
Sbjct: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120

Query: 121 LYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180
           LY +LC  WYGL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PCL WSVF
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTMVA 184
           LT+V+LTMV+
Sbjct: 181 LTIVSLTMVS 187

[Close]

BLAST of MS013710.1 vs. ExPASy TrEMBL
Match: A0A6J1GQH6 (translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.8e-52
Identity = 115/187 (61.50%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATA----TAPARKPTATARRGLKSLAVAVSVPVSLSLLAVYLL 60
           MAS +LKHR   +S     A    +A   K  A A+RGLKSLAVAVS+P++++LL++ LL
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60

Query: 61  SDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNALYLYTLYF 120
           + P  + PS+ KPFW PSA  VN GS ASSLLMG ++WL WA+GGF + PNALYLYTLY 
Sbjct: 61  ARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYL 120

Query: 121 LLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTV 180
           +LC  W+GL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PCL WSVFLT+
Sbjct: 121 VLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTI 180

Query: 181 VNLTMVA 184
           V+LTMV+
Sbjct: 181 VSLTMVS 187

[Close]

BLAST of MS013710.1 vs. TAIR 10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related )

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-30
Identity = 77/193 (39.90%), Postives = 105/193 (54.40%), Query Frame = 0


Query: 1   MASPDLKHRKPTESDDSATATAPARKPT------------ATARRGLKSLAVAVSVPVSL 60
           M S D+++R   + D + TA A   + +            A A+RGLKSL VAV+ PV +
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  SLLAVYLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAAWLVWADGGFHSTPNA 120
           +L A Y L     +   +    W P    ++    ASS LMG AAWLVW DGGFH  PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYFLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCL 180
           LYLY   FLLC  W  +    G+        L ++AAL GC + F  ++P+A +LVKPCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 AWSVFLTVVNLTM 182
           AW+ F+  VN+ +
Sbjct: 181 AWAAFVAAVNVKL 193

The following BLAST results are available for this feature:

BLAST of MS013710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151009.1	1.1e-92	98.91	translocator protein homolog [Momordica charantia]	[more]
XP_038897197.1	4.5e-57	65.10	translocator protein homolog [Benincasa hispida]	[more]
KAA0068008.1	1.8e-53	63.16	translocator protein-like protein [Cucumis melo var. makuwa] >TYK18119.1 translo...	[more]
XP_022992488.1	4.0e-53	62.11	translocator protein homolog [Cucurbita maxima]	[more]
KAG6575839.1	4.0e-53	62.11	Translocator protein-like protein, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS013710.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82245	1.9e-29	39.90	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of MS013710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBR2	5.5e-93	98.91	translocator protein homolog OS=Momordica charantia OX=3673 GN=LOC111019027 PE=3...	[more]
A0A0A0KAU9	3.5e-55	63.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=3 SV=1	[more]
A0A5A7VJL5	8.6e-54	63.16	Translocator protein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1JZC9	1.9e-53	62.11	translocator protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488809 PE=3 SV...	[more]
A0A6J1GQH6	2.8e-52	61.50	translocator protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456181 PE=3 ...	[more]

BLAST of MS013710.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47770.1	1.3e-30	39.90	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 41..182 e-value: 8.5E-18 score: 64.7
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 27..184 e-value: 1.6E-27 score: 94.0
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 20..182
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 38..182 e-value: 2.57718E-18 score: 75.226
IPR038330	TspO/MBR-related superfamily	GENE3D	1.20.1260.100	TspO/MBR protein	coord: 33..184 e-value: 1.7E-19 score: 72.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR10057:SF6	TSPO/MBR FAMILY PROTEIN	coord: 20..182

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013710	MS013710	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013710.1-cds	MS013710.1-cds-scaffold263:368938..369489	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013710.1	MS013710.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane