MS013421.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013421.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Location	scaffold402: 1398791 .. 1399001 (-)
Sequence length	207
RNA-Seq Expression	MS013421.1
Synteny	MS013421.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACACTTCGAATTGTTGATTCGTCGCCAAAGATGGCTTAAACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTATACTCCATCCGAAAGTTATCAGTATTTATCAAATTTGTTACCATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAAAGTGTTTTACCCGAATGAAATGAAAATTAGATTCATG

mRNA sequence

GAAAAACACTTCGAATTGTTGATTCGTCGCCAAAGATGGCTTACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTACTCCATCCGAAAGTTATCAGTATTTATCAAATTTGTTACCATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAAAGTGTTTTACCCGAATGAAATGAAAATTAGATTCATG

Coding sequence (CDS)

GAAAAACACTTCGAATTGTTGATTCGTCGCCAAAGATGGCTTACCAATAGTTCATTATCTAATGGATTTTTCTGTTCTACTCCATCCGAAAGTTATCAGTATTTATCAAATTTGTTACCATCTAACGGAACGCTATTGGATCAAATGACAAAGACATTGTTGAGAAAAAAAGTGTTTTACCCGAATGAAATGAAAATTAGATTCATG

Protein sequence

EKHFELLIRRQRWLTNSSLSNGFFCSTPSESYQYLSNLLPSNGTLLDQMTKTLLRKKVFYPNEMKIRFM

Homology

[Close]

BLAST of MS013421.1 vs. NCBI nr
Match: YP_010143466.1 (Ycf2 [Peganum harmala] >YP_010143486.1 Ycf2 [Peganum harmala] >QQL04673.1 Ycf2 [Peganum harmala] >QQL04693.1 Ycf2 [Peganum harmala])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2224 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2283

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2284 LFPDEMKIGFM 2294

[Close]

BLAST of MS013421.1 vs. NCBI nr
Match: YP_009873430.1 (hypothetical protein RF2 [Acer sutchuenense subsp. tienchuanense] >YP_009873452.1 hypothetical protein RF2 [Acer sutchuenense subsp. tienchuanense] >QKT28465.1 hypothetical protein RF2 [Acer sutchuenense subsp. tienchuanense] >QKT28466.1 hypothetical protein RF2 [Acer sutchuenense subsp. tienchuanense])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2213 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2272

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2273 LFPDEMKIGFM 2283

[Close]

BLAST of MS013421.1 vs. NCBI nr
Match: YP_009476227.1 (Ycf2 [Eurycorymbus cavaleriei] >YP_009476249.1 Ycf2 [Eurycorymbus cavaleriei] >AVM38231.1 Ycf2 [Eurycorymbus cavaleriei] >AVM38253.1 Ycf2 [Eurycorymbus cavaleriei])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2214 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2273

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2274 LFPDEMKIGFM 2284

[Close]

BLAST of MS013421.1 vs. NCBI nr
Match: YP_009478404.1 (Ycf2 [Zanthoxylum simulans] >YP_009478424.1 Ycf2 [Zanthoxylum simulans] >YP_009917121.1 hypothetical protein RF2 [Zanthoxylum armatum] >YP_009917140.1 hypothetical protein RF2 [Zanthoxylum armatum] >AXZ62502.1 Ycf2 [Zanthoxylum sp. NH-2018] >AXZ62589.1 Ycf2 [Zanthoxylum schinifolium] >AVP50048.1 Ycf2 [Zanthoxylum simulans] >AVP50049.1 Ycf2 [Zanthoxylum simulans] >AXZ62503.1 Ycf2 [Zanthoxylum sp. NH-2018])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2214 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2273

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2274 LFPDEMKIGFM 2284

[Close]

BLAST of MS013421.1 vs. NCBI nr
Match: YP_009412701.1 (Ycf2 [Phellodendron amurense] >YP_009412720.1 Ycf2 [Phellodendron amurense] >YP_009940610.1 Ycf2 [Phellodendron chinense] >YP_009940629.1 Ycf2 [Phellodendron chinense] >ASK50987.1 Ycf2 [Phellodendron amurense] >ASK50988.1 Ycf2 [Phellodendron amurense] >QNZ92250.1 Ycf2 [Phellodendron chinense] >QNZ92269.1 Ycf2 [Phellodendron chinense] >QYJ09033.1 hypothetical protein RF2 [Phellodendron chinense])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2206 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2265

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2266 LFPDEMKIGFM 2276

[Close]

BLAST of MS013421.1 vs. ExPASy Swiss-Prot
Match: B1A978 (Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-23
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2228 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2287

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2288 LFPDEMKIGFM 2298

[Close]

BLAST of MS013421.1 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-23
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2212 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2271

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2272 LFPDEMKIGFM 2282

[Close]

BLAST of MS013421.1 vs. ExPASy Swiss-Prot
Match: Q49KT6 (Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-22
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNG LLDQMTKTLLRK+ 
Sbjct: 2210 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGRLLDQMTKTLLRKRW 2269

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2270 LFPDEMKIGFM 2280

[Close]

BLAST of MS013421.1 vs. ExPASy Swiss-Prot
Match: A4QKE8 (Protein Ycf2 OS=Barbarea verna OX=50458 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-21
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI+RQRWL TNSSLSNGFF S T SESYQYLSNL  SNGTLLD+MTKTLL+K+ 
Sbjct: 2220 EKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRW 2279

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2280 LFPDEMKIGFM 2290

[Close]

BLAST of MS013421.1 vs. ExPASy Swiss-Prot
Match: A4QLE9 (Protein Ycf2 OS=Lepidium virginicum OX=59292 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-21
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI+RQRWL TNSSLSNGFF S T SESYQYLSNL  SNGTLLD+MTKTLL+K+ 
Sbjct: 2217 EKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFLSNGTLLDRMTKTLLKKRW 2276

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2277 LFPDEMKIGFM 2287

[Close]

BLAST of MS013421.1 vs. ExPASy TrEMBL
Match: A0A7G7XSR2 (Protein Ycf2 OS=Acer coriaceifolium OX=1779278 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2213 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2272

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2273 LFPDEMKIGFM 2283

[Close]

BLAST of MS013421.1 vs. ExPASy TrEMBL
Match: A0A7L9CVW6 (Protein Ycf2 OS=Citrus hongheensis OX=496653 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2212 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2271

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2272 LFPDEMKIGFM 2282

[Close]

BLAST of MS013421.1 vs. ExPASy TrEMBL
Match: A0A1B0V9X6 (Protein Ycf2 OS=Zanthoxylum schinifolium OX=354530 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2220 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2279

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2280 LFPDEMKIGFM 2290

[Close]

BLAST of MS013421.1 vs. ExPASy TrEMBL
Match: A0A1Z1G971 (Protein Ycf2 OS=Anacardium occidentale OX=171929 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2200 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2259

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2260 LFPDEMKIGFM 2270

[Close]

BLAST of MS013421.1 vs. ExPASy TrEMBL
Match: A0A159BNP4 (Protein Ycf2 OS=Citrus platymamma OX=237571 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI RQRWL TNSSLSNGFF S TPSESYQYLSNL  SNGTLLDQMTKTLLRK+ 
Sbjct: 2212 EKHFELLIHRQRWLRTNSSLSNGFFRSNTPSESYQYLSNLFLSNGTLLDQMTKTLLRKRW 2271

Query: 61   FYPNEMKIRFM 70
             +P+EMKI FM
Sbjct: 2272 LFPDEMKIGFM 2282

[Close]

BLAST of MS013421.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 99.8 bits (247), Expect = 9.4e-22
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI+RQRWL TNSSLSNGFF S T SESYQYLSNL  SNGTLLD+MTKTLL+K+ 
Sbjct: 2224 EKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDRMTKTLLKKRW 2283

Query: 61   FYPNEMKIRFM 70
             + +EMKI FM
Sbjct: 2284 LFSDEMKIGFM 2294

[Close]

BLAST of MS013421.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 99.8 bits (247), Expect = 9.4e-22
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1    EKHFELLIRRQRWL-TNSSLSNGFFCS-TPSESYQYLSNLLPSNGTLLDQMTKTLLRKKV 60
            EKHFELLI+RQRWL TNSSLSNGFF S T SESYQYLSNL  SNGTLLD+MTKTLL+K+ 
Sbjct: 2224 EKHFELLIQRQRWLRTNSSLSNGFFRSNTRSESYQYLSNLFISNGTLLDRMTKTLLKKRW 2283

Query: 61   FYPNEMKIRFM 70
             + +EMKI FM
Sbjct: 2284 LFSDEMKIGFM 2294

The following BLAST results are available for this feature:

BLAST of MS013421.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010143466.1	2.2e-20	83.10	Ycf2 [Peganum harmala] >YP_010143486.1 Ycf2 [Peganum harmala] >QQL04673.1 Ycf2 [...	[more]
YP_009873430.1	2.2e-20	83.10	hypothetical protein RF2 [Acer sutchuenense subsp. tienchuanense] >YP_009873452....	[more]
YP_009476227.1	2.2e-20	83.10	Ycf2 [Eurycorymbus cavaleriei] >YP_009476249.1 Ycf2 [Eurycorymbus cavaleriei] >A...	[more]
YP_009478404.1	2.2e-20	83.10	Ycf2 [Zanthoxylum simulans] >YP_009478424.1 Ycf2 [Zanthoxylum simulans] >YP_0099...	[more]
YP_009412701.1	2.2e-20	83.10	Ycf2 [Phellodendron amurense] >YP_009412720.1 Ycf2 [Phellodendron amurense] >YP_...	[more]

BLAST of MS013421.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1A978	2.8e-23	83.10	Protein Ycf2 OS=Carica papaya OX=3649 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	2.8e-23	83.10	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]
Q49KT6	1.4e-22	81.69	Protein Ycf2 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf2-A PE=3 SV=1	[more]
A4QKE8	1.6e-21	78.87	Protein Ycf2 OS=Barbarea verna OX=50458 GN=ycf2-A PE=3 SV=1	[more]
A4QLE9	1.6e-21	78.87	Protein Ycf2 OS=Lepidium virginicum OX=59292 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MS013421.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7G7XSR2	1.0e-20	83.10	Protein Ycf2 OS=Acer coriaceifolium OX=1779278 GN=ycf2 PE=3 SV=1	[more]
A0A7L9CVW6	1.0e-20	83.10	Protein Ycf2 OS=Citrus hongheensis OX=496653 GN=ycf2 PE=3 SV=1	[more]
A0A1B0V9X6	1.0e-20	83.10	Protein Ycf2 OS=Zanthoxylum schinifolium OX=354530 GN=ycf2 PE=3 SV=1	[more]
A0A1Z1G971	1.0e-20	83.10	Protein Ycf2 OS=Anacardium occidentale OX=171929 GN=ycf2 PE=3 SV=1	[more]
A0A159BNP4	1.0e-20	83.10	Protein Ycf2 OS=Citrus platymamma OX=237571 GN=ycf2 PE=3 SV=1	[more]

BLAST of MS013421.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	9.4e-22	77.46	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	9.4e-22	77.46	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..66
None	No IPR available	PANTHER	PTHR33078:SF65	SUBFAMILY NOT NAMED	coord: 1..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013421	MS013421	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013421.1-cds	MS013421.1-cds-scaffold402:1398791..1398919	CDS
MS013421.1-cds	MS013421.1-cds-scaffold402:1398922..1398957	CDS
MS013421.1-cds	MS013421.1-cds-scaffold402:1398960..1399001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013421.1	MS013421.1-protein	polypeptide