MS013390.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013390.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	scaffold402: 902745 .. 903275 (-)
Sequence length	531
RNA-Seq Expression	MS013390.1
Synteny	MS013390.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCCGCCGTCGCCGCCGCCGCCGCCGCCGCTCTGACCCGCCGCAGTTCCACCACCACCACCACCACCAACGGATCTGTCCCCGACGGCTTCTACTTCGGGCATCCCCGCCAGTTCTGCCCTGTCCGGCCGCCGCCATTGATGAGCCGCTACGAGTCCCAGAAGCGGCGCGACTGGAACAACTTCCGGCAGTACCTCCGCAACCGCTGGCCGGCGCTGAGCCTCGCCCGCTGCAGCGGCGAGAATGTCGTCGAGTTCCTCTCCTACCTCGACGACTTCGGGCAGACCAAATTCCACGCCGCCCCCTGCCCCAACTTCGGCCGCCGCTACCCGACCGCCGACCCCGATGGCTGCCCCTGCCCGGCCCGCCAGCCCTGGACAAGCCTCGACGCCCTCATCCGCCGCCTCCGCGTCGCCTTCGAGGAGAACGGCGGCAACCCGGCCACCAACCCATTCAACGCCGTCCACGTCAAAGTTTACCTCAACGGAGTTAAGGACTCTCAAGATAAATCCAGAGGAATTGATCGG

mRNA sequence

ATGTCAGCCGCCGTCGCCGCCGCCGCCGCCGCCGCTCTGACCCGCCGCAGTTCCACCACCACCACCACCACCAACGGATCTGTCCCCGACGGCTTCTACTTCGGGCATCCCCGCCAGTTCTGCCCTGTCCGGCCGCCGCCATTGATGAGCCGCTACGAGTCCCAGAAGCGGCGCGACTGGAACAACTTCCGGCAGTACCTCCGCAACCGCTGGCCGGCGCTGAGCCTCGCCCGCTGCAGCGGCGAGAATGTCGTCGAGTTCCTCTCCTACCTCGACGACTTCGGGCAGACCAAATTCCACGCCGCCCCCTGCCCCAACTTCGGCCGCCGCTACCCGACCGCCGACCCCGATGGCTGCCCCTGCCCGGCCCGCCAGCCCTGGACAAGCCTCGACGCCCTCATCCGCCGCCTCCGCGTCGCCTTCGAGGAGAACGGCGGCAACCCGGCCACCAACCCATTCAACGCCGTCCACGTCAAAGTTTACCTCAACGGAGTTAAGGACTCTCAAGATAAATCCAGAGGAATTGATCGG

Coding sequence (CDS)

ATGTCAGCCGCCGTCGCCGCCGCCGCCGCCGCCGCTCTGACCCGCCGCAGTTCCACCACCACCACCACCACCAACGGATCTGTCCCCGACGGCTTCTACTTCGGGCATCCCCGCCAGTTCTGCCCTGTCCGGCCGCCGCCATTGATGAGCCGCTACGAGTCCCAGAAGCGGCGCGACTGGAACAACTTCCGGCAGTACCTCCGCAACCGCTGGCCGGCGCTGAGCCTCGCCCGCTGCAGCGGCGAGAATGTCGTCGAGTTCCTCTCCTACCTCGACGACTTCGGGCAGACCAAATTCCACGCCGCCCCCTGCCCCAACTTCGGCCGCCGCTACCCGACCGCCGACCCCGATGGCTGCCCCTGCCCGGCCCGCCAGCCCTGGACAAGCCTCGACGCCCTCATCCGCCGCCTCCGCGTCGCCTTCGAGGAGAACGGCGGCAACCCGGCCACCAACCCATTCAACGCCGTCCACGTCAAAGTTTACCTCAACGGAGTTAAGGACTCTCAAGATAAATCCAGAGGAATTGATCGG

Protein sequence

MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR

Homology

[Close]

BLAST of MS013390.1 vs. NCBI nr
Match: XP_022142557.1 (protein G1-like7 [Momordica charantia])

HSP 1 Score: 371.7 bits (953), Expect = 3.5e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDW 60
           MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDW
Sbjct: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDW 60

Query: 61  NNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCP 120
           NNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCP
Sbjct: 61  NNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCP 120

Query: 121 CPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 178
           CPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR
Sbjct: 121 CPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 177

[Close]

BLAST of MS013390.1 vs. NCBI nr
Match: XP_038894791.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-60
Identity = 127/179 (70.95%), Postives = 138/179 (77.09%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFG--HPRQFCPVRPPPLMSRYESQKRR 60
           MSAAVAAAAAAAL+RRSS+TTTTT+   P   ++   +P     VRPPPL SRYE  KRR
Sbjct: 1   MSAAVAAAAAAALSRRSSSTTTTTSTRSPSESFYAQYYPSVSVSVRPPPLASRYECLKRR 60

Query: 61  DWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDG 120
           DWN FRQYLRNR P LSLA CSG NVVEFL YLD+ GQTK H A CPNFG  YP  DP  
Sbjct: 61  DWNRFRQYLRNRCPTLSLACCSGANVVEFLCYLDELGQTKVHTATCPNFGHLYP-VDP-Y 120

Query: 121 CPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 178
           C CP +QPWT+L ALI RLRVAFEENGGNP TNPFN V VK+YLN VKDSQD+SRGIDR
Sbjct: 121 CNCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKIYLNDVKDSQDRSRGIDR 177

[Close]

BLAST of MS013390.1 vs. NCBI nr
Match: XP_008459123.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA0047053.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa] >TYK30589.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57
Identity = 124/178 (69.66%), Postives = 139/178 (78.09%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFY-FGHPRQFCPVRPPPLMSRYESQKRRD 60
           MSAAVAAAAAAAL RR+S+T+T ++    D FY   +P     VRPPPL+SRYE  KRRD
Sbjct: 1   MSAAVAAAAAAALGRRTSSTSTPSSS---DSFYSHYYPSASVSVRPPPLLSRYECLKRRD 60

Query: 61  WNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGC 120
           WN FRQYLR+R P LSLA CSG NVVEFL YLD+ GQ+K H A CPNFG+RYP  DP  C
Sbjct: 61  WNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYP-VDP-YC 120

Query: 121 PCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 178
            CP +QPWT+L ALI RLRVAFEENGGNP TNPFN V VKVYLN VKDSQ++SRGIDR
Sbjct: 121 DCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of MS013390.1 vs. NCBI nr
Match: XP_004135751.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN65964.1 hypothetical protein Csa_023208 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-55
Identity = 124/181 (68.51%), Postives = 137/181 (75.69%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRR---SSTTTTTTNGSVPDGFY-FGHPRQFCPVRPPPLMSRYESQK 60
           MSAAVAAAAAAAL+RR   SS+++TT   S  D FY   +P     VRP PL+SRY+  K
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60

Query: 61  RRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADP 120
           RRDWN FRQYLR+R P LSLA CSG NVVEFLSYLD  GQ+K H A CP+FG RYP  DP
Sbjct: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYP-VDP 120

Query: 121 DGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGID 178
             C CP +QPWT+L ALI RLRVAFEENGGNP TNPFN V VKVYLN VKDSQ+ SRGID
Sbjct: 121 -YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGID 179

[Close]

BLAST of MS013390.1 vs. NCBI nr
Match: KAG7019447.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 116/181 (64.09%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRR---SSTTTTTTNGSVPDGFYFG-HPRQFCPVRPPPLMSRYESQK 60
           MSAAVAAAAAAAL RR   SS+++TT+N S    FY   +P     VR PPL SRYE +K
Sbjct: 1   MSAAVAAAAAAALARRSSSSSSSSTTSNRSSSGSFYSQYYPSPSVSVRQPPLASRYECRK 60

Query: 61  RRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADP 120
           R DW+ FRQYLR+R P LSL+ C+G ++VEFL YLD+FG TK HA  CPNFG RYP  DP
Sbjct: 61  RLDWSKFRQYLRSRCPTLSLSTCTGADIVEFLCYLDEFGDTKVHADTCPNFGHRYP-VDP 120

Query: 121 DGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGID 178
             C CP +QPW S+  LI RLRVAFEENGGNP TNPFNAV VK+YL+ +KDSQ++SRGID
Sbjct: 121 -YCDCPTQQPWNSVAGLISRLRVAFEENGGNPVTNPFNAVDVKIYLDDIKDSQNRSRGID 179

[Close]

BLAST of MS013390.1 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 84/141 (59.57%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 35  GHPRQFCPVRPPPLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDF 94
           G P      +PP  +SRYESQKRRDWN F QYLRN  P L+LARCSG +V+EFL YLD F
Sbjct: 15  GAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQF 74

Query: 95  GQTKFHAAPCPNFGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFN 154
           G+TK HA+ C  +G+  P   P  CPCP RQ W SLDALI RLR A+EE+GG P +NPF 
Sbjct: 75  GKTKVHASGCAFYGQPSP---PGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFA 134

Query: 155 AVHVKVYLNGVKDSQDKSRGI 176
           A  V++YL  V+DSQ K+RGI
Sbjct: 135 ARAVRIYLREVRDSQAKARGI 152

[Close]

BLAST of MS013390.1 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 84/141 (59.57%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 35  GHPRQFCPVRPPPLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDF 94
           G P      +PP  +SRYESQKRRDWN F QYLRN  P L+LARCSG +V+EFL YLD F
Sbjct: 15  GAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQF 74

Query: 95  GQTKFHAAPCPNFGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFN 154
           G+TK HA+ C  +G+  P   P  CPCP RQ W SLDALI RLR A+EE+GG P +NPF 
Sbjct: 75  GKTKVHASGCAFYGQPSP---PGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFA 134

Query: 155 AVHVKVYLNGVKDSQDKSRGI 176
           A  V++YL  V+DSQ K+RGI
Sbjct: 135 ARAVRIYLREVRDSQAKARGI 152

[Close]

BLAST of MS013390.1 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.0e-42
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 45  PPPLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPC 104
           PP   SRYESQKRRDWN F QYL+N  P L+L+RCSG +V+EFL YLD FG+TK H A C
Sbjct: 25  PPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAAC 84

Query: 105 PNFGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNG 164
           P FG + P   P  C CP +Q W SLDALI RLR A+EENGG P +NPF A  V++YL  
Sbjct: 85  PYFGHQQP---PSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLRE 144

Query: 165 VKDSQDKSRGI 176
           V++SQ K+RGI
Sbjct: 145 VRESQAKARGI 152

[Close]

BLAST of MS013390.1 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41
Identity = 82/129 (63.57%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 47  PLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPN 106
           P  SRYESQKRRDW+ F QYLRN  P L L+RCSG +V+EFL YLD FG+TK HAA CP 
Sbjct: 18  PRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPF 77

Query: 107 FGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVK 166
           FG   P   P  CPCP RQ W SLDAL+ RLR AFEE+GG P  NPF A  V++YL  V+
Sbjct: 78  FGHPSP---PAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVR 137

Query: 167 DSQDKSRGI 176
           DSQ K+RGI
Sbjct: 138 DSQAKARGI 143

[Close]

BLAST of MS013390.1 vs. ExPASy Swiss-Prot
Match: Q652I1 (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41
Identity = 82/129 (63.57%), Postives = 93/129 (72.09%), Query Frame = 0


Query: 47  PLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPN 106
           P  SRYESQKRRDW+ F QYLRN  P L L+RCSG +V+EFL YLD FG+TK HAA CP 
Sbjct: 18  PRPSRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPF 77

Query: 107 FGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVK 166
           FG   P   P  CPCP RQ W SLDAL+ RLR AFEE+GG P  NPF A  V++YL  V+
Sbjct: 78  FGHPSP---PAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVR 137

Query: 167 DSQDKSRGI 176
           DSQ K+RGI
Sbjct: 138 DSQAKARGI 143

[Close]

BLAST of MS013390.1 vs. ExPASy TrEMBL
Match: A0A6J1CN38 (protein G1-like7 OS=Momordica charantia OX=3673 GN=LOC111012640 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.7e-99
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDW 60
           MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDW
Sbjct: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDW 60

Query: 61  NNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCP 120
           NNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCP
Sbjct: 61  NNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCP 120

Query: 121 CPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 178
           CPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR
Sbjct: 121 CPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 177

[Close]

BLAST of MS013390.1 vs. ExPASy TrEMBL
Match: A0A5D3E452 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold74574G00010 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.5e-58
Identity = 124/178 (69.66%), Postives = 139/178 (78.09%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFY-FGHPRQFCPVRPPPLMSRYESQKRRD 60
           MSAAVAAAAAAAL RR+S+T+T ++    D FY   +P     VRPPPL+SRYE  KRRD
Sbjct: 1   MSAAVAAAAAAALGRRTSSTSTPSSS---DSFYSHYYPSASVSVRPPPLLSRYECLKRRD 60

Query: 61  WNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGC 120
           WN FRQYLR+R P LSLA CSG NVVEFL YLD+ GQ+K H A CPNFG+RYP  DP  C
Sbjct: 61  WNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYP-VDP-YC 120

Query: 121 PCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 178
            CP +QPWT+L ALI RLRVAFEENGGNP TNPFN V VKVYLN VKDSQ++SRGIDR
Sbjct: 121 DCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of MS013390.1 vs. ExPASy TrEMBL
Match: A0A1S3C9J9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103498324 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.5e-58
Identity = 124/178 (69.66%), Postives = 139/178 (78.09%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFY-FGHPRQFCPVRPPPLMSRYESQKRRD 60
           MSAAVAAAAAAAL RR+S+T+T ++    D FY   +P     VRPPPL+SRYE  KRRD
Sbjct: 1   MSAAVAAAAAAALGRRTSSTSTPSSS---DSFYSHYYPSASVSVRPPPLLSRYECLKRRD 60

Query: 61  WNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGC 120
           WN FRQYLR+R P LSLA CSG NVVEFL YLD+ GQ+K H A CPNFG+RYP  DP  C
Sbjct: 61  WNRFRQYLRSRCPTLSLACCSGANVVEFLCYLDELGQSKIHGATCPNFGQRYP-VDP-YC 120

Query: 121 PCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGIDR 178
            CP +QPWT+L ALI RLRVAFEENGGNP TNPFN V VKVYLN VKDSQ++SRGIDR
Sbjct: 121 DCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVDVKVYLNDVKDSQERSRGIDR 173

[Close]

BLAST of MS013390.1 vs. ExPASy TrEMBL
Match: A0A0A0LY69 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.2e-55
Identity = 124/181 (68.51%), Postives = 137/181 (75.69%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRR---SSTTTTTTNGSVPDGFY-FGHPRQFCPVRPPPLMSRYESQK 60
           MSAAVAAAAAAAL+RR   SS+++TT   S  D FY   +P     VRP PL+SRY+  K
Sbjct: 1   MSAAVAAAAAAALSRRTSSSSSSSTTITRSSSDSFYSHYYPSVSVSVRPQPLVSRYDCLK 60

Query: 61  RRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADP 120
           RRDWN FRQYLR+R P LSLA CSG NVVEFLSYLD  GQ+K H A CP+FG RYP  DP
Sbjct: 61  RRDWNRFRQYLRSRSPTLSLACCSGSNVVEFLSYLDRLGQSKIHGATCPSFGHRYP-VDP 120

Query: 121 DGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGID 178
             C CP +QPWT+L ALI RLRVAFEENGGNP TNPFN V VKVYLN VKDSQ+ SRGID
Sbjct: 121 -YCDCPTQQPWTTLVALIGRLRVAFEENGGNPVTNPFNTVVVKVYLNKVKDSQETSRGID 179

[Close]

BLAST of MS013390.1 vs. ExPASy TrEMBL
Match: A0A6J1K6D6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490488 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.1e-53
Identity = 115/169 (68.05%), Postives = 126/169 (74.56%), Query Frame = 0


Query: 1   MSAAVAAAAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDW 60
           MSAAVAAAAAAAL RRSS+ +T ++G     +Y        P+R PPL SRYE+QKR+DW
Sbjct: 1   MSAAVAAAAAAALRRRSSSNSTASDGLYTQ-YYPSLSLPKMPLRQPPLFSRYETQKRQDW 60

Query: 61  NNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCP 120
           NNFRQY R  +P LSLARCSGENVVEFLSYLD FGQTK HAA C N G RYP      C 
Sbjct: 61  NNFRQYFRTHFPKLSLARCSGENVVEFLSYLDGFGQTKIHAATCSNSGHRYPA--DICCD 120

Query: 121 CPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQ 170
           CP RQPWTSL+ALI RL+VAF ENGGNP TNPFNAV VK YL  VKDSQ
Sbjct: 121 CPTRQPWTSLNALIGRLKVAFVENGGNPVTNPFNAVDVKAYLIDVKDSQ 166

[Close]

BLAST of MS013390.1 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-43
Identity = 80/131 (61.07%), Postives = 95/131 (72.52%), Query Frame = 0


Query: 45  PPPLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPC 104
           PP   SRYESQKRRDWN F QYL+N  P L+L+RCSG +V+EFL YLD FG+TK H A C
Sbjct: 25  PPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAAC 84

Query: 105 PNFGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNG 164
           P FG + P   P  C CP +Q W SLDALI RLR A+EENGG P +NPF A  V++YL  
Sbjct: 85  PYFGHQQP---PSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLRE 144

Query: 165 VKDSQDKSRGI 176
           V++SQ K+RGI
Sbjct: 145 VRESQAKARGI 152

[Close]

BLAST of MS013390.1 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-42
Identity = 91/168 (54.17%), Postives = 109/168 (64.88%), Query Frame = 0


Query: 8   AAAAALTRRSSTTTTTTNGSVPDGFYFGHPRQFCPVRPPPLMSRYESQKRRDWNNFRQYL 67
           AAAA  T  SS++++++ GS  +                  +SRYE+QKRRDWN F QYL
Sbjct: 22  AAAATTTTTSSSSSSSSGGSGTN-----------------QLSRYENQKRRDWNTFGQYL 81

Query: 68  RNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGRRYPTADPDGCPCPARQPW 127
           RN  P LSL+RCSG +V+EFL YLD FG+TK H   CP FG   P   P  C CP RQ W
Sbjct: 82  RNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNP---PAPCACPLRQAW 141

Query: 128 TSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGVKDSQDKSRGI 176
            SLDALI RLR AFEENGG+P TNPF A  V++YL  V+DSQ K+RGI
Sbjct: 142 GSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGI 169

[Close]

BLAST of MS013390.1 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 165.2 bits (417), Expect = 4.7e-41
Identity = 80/131 (61.07%), Postives = 91/131 (69.47%), Query Frame = 0


Query: 45  PPPLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPC 104
           P    SRYE+QKRRDWN F QYLRN  P LSL+RCSG +V+EFL YLD FG+TK H   C
Sbjct: 48  PSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNIC 107

Query: 105 PNFGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNG 164
             +G   P   P  CPCP RQ W SLDALI RLR AFEENGG P TNPF A  V++YL  
Sbjct: 108 HFYGHPNP---PAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLRE 167

Query: 165 VKDSQDKSRGI 176
           V+D Q K+RG+
Sbjct: 168 VRDMQSKARGV 175

[Close]

BLAST of MS013390.1 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 162.5 bits (410), Expect = 3.0e-40
Identity = 78/130 (60.00%), Postives = 91/130 (70.00%), Query Frame = 0


Query: 46  PPLMSRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCP 105
           PP  SRYE+QKRRDWN F QYLRN  P LSLA CSG +V++FL YLD FG+TK H   C 
Sbjct: 28  PPSSSRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCA 87

Query: 106 NFGRRYPTADPDGCPCPARQPWTSLDALIRRLRVAFEENGGNPATNPFNAVHVKVYLNGV 165
            FG   P   P  CPCP RQ W SLDALI RLR A+EENGG P T+PF +  V+++L  V
Sbjct: 88  FFGLPNP---PAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREV 147

Query: 166 KDSQDKSRGI 176
           +D Q KSRG+
Sbjct: 148 RDFQAKSRGV 154

[Close]

BLAST of MS013390.1 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-39
Identity = 78/127 (61.42%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 50  SRYESQKRRDWNNFRQYLRNRWPALSLARCSGENVVEFLSYLDDFGQTKFHAAPCPNFGR 109
           SRYESQKRRDWN F QYLRN  P L+L+RCSG +V+EFL YLD FG+TK HA  CP FG+
Sbjct: 18  SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQ 77

Query: 110 RYPTADPDGCPCPARQPWTSLDALIRRLRVAFEE-NGGNPATNPFNAVHVKVYLNGVKDS 169
             P   P  C CP +Q W SLDALI RLR AFEE  GG P +NPF A  V++YL  V+ +
Sbjct: 78  PNP---PSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQT 137

Query: 170 QDKSRGI 176
           Q K+RGI
Sbjct: 138 QAKARGI 141

The following BLAST results are available for this feature:

BLAST of MS013390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142557.1	3.5e-99	100.00	protein G1-like7 [Momordica charantia]	[more]
XP_038894791.1	5.5e-60	70.95	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_008459123.1	1.1e-57	69.66	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucumis melo] >KAA00...	[more]
XP_004135751.1	2.4e-55	68.51	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 [Cucumis sativus] >KGN65964.1 hypothe...	[more]
KAG7019447.1	1.7e-53	64.09	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]

BLAST of MS013390.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XED8	1.1e-42	59.57	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.1e-42	59.57	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9LMK2	7.0e-42	61.07	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2YG32	2.0e-41	63.57	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]
Q652I1	2.0e-41	63.57	Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1	[more]

BLAST of MS013390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CN38	1.7e-99	100.00	protein G1-like7 OS=Momordica charantia OX=3673 GN=LOC111012640 PE=3 SV=1	[more]
A0A5D3E452	5.5e-58	69.66	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C9J9	5.5e-58	69.66	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LY69	1.2e-55	68.51	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G553520 PE=3 S...	[more]
A0A6J1K6D6	9.1e-53	68.05	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like isoform X3 OS=Cucurbita maxima O...	[more]

BLAST of MS013390.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07090.1	5.0e-43	61.07	Protein of unknown function (DUF640)	[more]
AT3G23290.2	4.2e-42	54.17	Protein of unknown function (DUF640)	[more]
AT2G31160.1	4.7e-41	61.07	Protein of unknown function (DUF640)	[more]
AT3G04510.1	3.0e-40	60.00	Protein of unknown function (DUF640)	[more]
AT5G58500.1	3.3e-39	61.42	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 44..167 e-value: 6.0E-47 score: 159.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 51..177 score: 48.490833
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 24..176
None	No IPR available	PANTHER	PTHR31165:SF41	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4	coord: 24..176

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013390	MS013390	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013390.1-cds	MS013390.1-cds-scaffold402:902745..903275	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013390.1	MS013390.1-protein	polypeptide