MS013212.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013212.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Homeobox Hox-B3-like protein
Location	scaffold459: 1241198 .. 1241821 (-)
Sequence length	624
RNA-Seq Expression	MS013212.1
Synteny	MS013212.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCAAATCGACCATCTCCCCTTCCACGCCATCGACCCCAGATCTCTACTCCTCCACCAGAACTCCGGTGCCGATCAACCCATTTCTCTACGGCTCACGGCGGGGAGTTTTTCGATGGAAAGAGGGCCCAGGTACAGAGCCTACGCAGAGCTCAGAGAATCTAAGCTCAGGCGGAGGAACGCGAGGTACTGCGACGGCGAGGAGCCGGAAAAACCCACGCCGCCGGCGAAGAAGCAGGTTAAGTTTCTGGGTTCGGAAACCGTTCGGAAGAGGTCGGCGGCGATGGCGCAATCGGTGCCGGATTTCTCCGCAGCGTTGAGGAAGGAGAACAGAAAGCCACCGGCGGCGGCGCTGCCGCCGGTGATGGAGATGACGCCACCGGGGAAGACGTGGGGGAAGAACAACGTGGGGCAGGGGCTGTCTAATTCGAGAGGGAGTAAGTCAGCCAGTGCCGGGGAGAAGAGGGGCGGCGCCGGCGGTGGGTTAACGGCGGCGAGAAAGAGTTATGCCGGATTTGAAGAGCTGAAGGGGTTTTCTACGGCGGCGGCGAACGCCATTAATGGCGAAATCAGGAGAGGAGGAAGGAAAGGGAAAACTGTATTGGGAATTAGACAGATT

mRNA sequence

ATGGCGGACCAAATCGACCATCTCCCCTTCCACGCCATCGACCCCAGATCTCTACTCCTCCACCAGAACTCCGGTGCCGATCAACCCATTTCTCTACGGCTCACGGCGGGGAGTTTTTCGATGGAAAGAGGGCCCAGGTACAGAGCCTACGCAGAGCTCAGAGAATCTAAGCTCAGGCGGAGGAACGCGAGGTACTGCGACGGCGAGGAGCCGGAAAAACCCACGCCGCCGGCGAAGAAGCAGGTTAAGTTTCTGGGTTCGGAAACCGTTCGGAAGAGGTCGGCGGCGATGGCGCAATCGGTGCCGGATTTCTCCGCAGCGTTGAGGAAGGAGAACAGAAAGCCACCGGCGGCGGCGCTGCCGCCGGTGATGGAGATGACGCCACCGGGGAAGACGTGGGGGAAGAACAACGTGGGGCAGGGGCTGTCTAATTCGAGAGGGAGTAAGTCAGCCAGTGCCGGGGAGAAGAGGGGCGGCGCCGGCGGTGGGTTAACGGCGGCGAGAAAGAGTTATGCCGGATTTGAAGAGCTGAAGGGGTTTTCTACGGCGGCGGCGAACGCCATTAATGGCGAAATCAGGAGAGGAGGAAGGAAAGGGAAAACTGTATTGGGAATTAGACAGATT

Coding sequence (CDS)

ATGGCGGACCAAATCGACCATCTCCCCTTCCACGCCATCGACCCCAGATCTCTACTCCTCCACCAGAACTCCGGTGCCGATCAACCCATTTCTCTACGGCTCACGGCGGGGAGTTTTTCGATGGAAAGAGGGCCCAGGTACAGAGCCTACGCAGAGCTCAGAGAATCTAAGCTCAGGCGGAGGAACGCGAGGTACTGCGACGGCGAGGAGCCGGAAAAACCCACGCCGCCGGCGAAGAAGCAGGTTAAGTTTCTGGGTTCGGAAACCGTTCGGAAGAGGTCGGCGGCGATGGCGCAATCGGTGCCGGATTTCTCCGCAGCGTTGAGGAAGGAGAACAGAAAGCCACCGGCGGCGGCGCTGCCGCCGGTGATGGAGATGACGCCACCGGGGAAGACGTGGGGGAAGAACAACGTGGGGCAGGGGCTGTCTAATTCGAGAGGGAGTAAGTCAGCCAGTGCCGGGGAGAAGAGGGGCGGCGCCGGCGGTGGGTTAACGGCGGCGAGAAAGAGTTATGCCGGATTTGAAGAGCTGAAGGGGTTTTCTACGGCGGCGGCGAACGCCATTAATGGCGAAATCAGGAGAGGAGGAAGGAAAGGGAAAACTGTATTGGGAATTAGACAGATT

Protein sequence

MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRRRNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKPPAAALPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGFSTAAANAINGEIRRGGRKGKTVLGIRQI

Homology

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BLAST of MS013212.1 vs. NCBI nr
Match: XP_022148227.1 (uncharacterized protein LOC111016939 [Momordica charantia])

HSP 1 Score: 394.8 bits (1013), Expect = 4.6e-106
Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 0


Query: 1   MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR 60
           MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR
Sbjct: 1   MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR 60

Query: 61  RNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKPPAAAL 120
           RNARYCDGE PEKPTPPAKKQVKFLGSETVRKRSAA+AQSVPDFSAALRKENRKPPAAAL
Sbjct: 61  RNARYCDGEAPEKPTPPAKKQVKFLGSETVRKRSAAVAQSVPDFSAALRKENRKPPAAAL 120

Query: 121 PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF 180
           PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF
Sbjct: 121 PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF 180

Query: 181 STAAANAINGEIRRGGRKGKTVLGIRQI 209
           STAAANAINGEIRRGGRKGKTVLGIRQI
Sbjct: 181 STAAANAINGEIRRGGRKGKTVLGIRQI 208

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BLAST of MS013212.1 vs. NCBI nr
Match: XP_011651352.1 (uncharacterized protein LOC101205045 [Cucumis sativus] >KGN57709.1 hypothetical protein Csa_011028 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 6.9e-78
Identity = 166/208 (79.81%), Postives = 174/208 (83.65%), Query Frame = 0


Query: 1   MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR 60
           MA +  HLPFH+ID RSLLLHQNS AD PISL LT   FSMERGPRYRAYAELRESKLR 
Sbjct: 1   MAHKFPHLPFHSIDSRSLLLHQNSAADHPISLHLTPEPFSMERGPRYRAYAELRESKLRL 60

Query: 61  RNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKPPAAAL 120
           RNA Y   E PEK TPP KKQVKFLGSETVRKRSA +AQSVPDFSA LRKENRKPP   L
Sbjct: 61  RNAMYRHDEHPEKSTPPPKKQVKFLGSETVRKRSATVAQSVPDFSAVLRKENRKPPPGML 120

Query: 121 PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF 180
            PVMEMTPPGKTWGK N+G   + SRGSKSASAGEKR   GGGLTA RKSYAGFEELKGF
Sbjct: 121 SPVMEMTPPGKTWGK-NIGGLSTTSRGSKSASAGEKR---GGGLTAVRKSYAGFEELKGF 180

Query: 181 STAAANAINGEIRRGGRKGKTVLGIRQI 209
           STAAANAINGE R+GGR+GKTVLG+RQI
Sbjct: 181 STAAANAINGENRKGGRRGKTVLGVRQI 204

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BLAST of MS013212.1 vs. NCBI nr
Match: XP_038903179.1 (uncharacterized protein LOC120089840 [Benincasa hispida])

HSP 1 Score: 300.8 bits (769), Expect = 9.0e-78
Identity = 172/215 (80.00%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 1   MADQID-----HLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRE 60
           MAD+ +     HLPFH+IDPRSLLLHQNS AD PISL+LTA  FSMERGPRYRAYAELRE
Sbjct: 1   MADKFNHLAQTHLPFHSIDPRSLLLHQNSAADLPISLQLTAEPFSMERGPRYRAYAELRE 60

Query: 61  SKLRRRNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKP 120
           SKLR RNA Y DGE+PEK TPPAKKQVKFL SET+RKRSAA+AQSVPDFSA LRKENRKP
Sbjct: 61  SKLRLRNAMYRDGEQPEKSTPPAKKQVKFLDSETLRKRSAAVAQSVPDFSAVLRKENRKP 120

Query: 121 PAAALPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFE 180
           P   L PVMEMTPPGKTWGK  +G   +NSRGSKSASAGEKR   GGGLTA RKSYAGFE
Sbjct: 121 P-PGLSPVMEMTPPGKTWGK-KIGGLSTNSRGSKSASAGEKR---GGGLTAVRKSYAGFE 180

Query: 181 ELKGFSTAAANAINGEIRR--GGRKGKTVLGIRQI 209
           E+KGFSTAAANAINGE RR  GGR+GKTVLGIRQI
Sbjct: 181 EMKGFSTAAANAINGENRRGGGGRRGKTVLGIRQI 210

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BLAST of MS013212.1 vs. NCBI nr
Match: KAG7036757.1 (hypothetical protein SDJN02_00377, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-76
Identity = 166/215 (77.21%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MADQID-----HLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRE 60
           MAD  D     HL FH+IDPRSLLLHQNS       L+LTA +FSMERGPRYRAYAELRE
Sbjct: 1   MADNFDHQTQTHLSFHSIDPRSLLLHQNSATHHYFPLQLTAETFSMERGPRYRAYAELRE 60

Query: 61  SKLRRRNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKP 120
           SKLR RNA Y DGE+PEK TPPAKKQV+F+GSETVRKRSA +AQSVPDFSA LRKENR+P
Sbjct: 61  SKLRLRNAMYRDGEQPEKSTPPAKKQVRFVGSETVRKRSATVAQSVPDFSAVLRKENRRP 120

Query: 121 PAAALPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFE 180
           P   L PVMEMTPPGKTWGKNN+G   +NSRGSKSASAGEKR   GGGL AARKSYAGFE
Sbjct: 121 P-PGLSPVMEMTPPGKTWGKNNIGGISANSRGSKSASAGEKR---GGGLAAARKSYAGFE 180

Query: 181 ELKGFSTAAANAINGEIRR--GGRKGKTVLGIRQI 209
           ELKGFSTAAANAINGE +R  GGR+GKTVLG+RQI
Sbjct: 181 ELKGFSTAAANAINGENKRGGGGRRGKTVLGVRQI 211

[Close]

BLAST of MS013212.1 vs. NCBI nr
Match: XP_022998093.1 (uncharacterized protein LOC111492844 [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-76
Identity = 164/214 (76.64%), Postives = 180/214 (84.11%), Query Frame = 0


Query: 1   MADQID-----HLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRE 60
           MAD  D     HLPFH+IDPRSLLLHQNS       L+LTA +FSMERGPRYRAYAELRE
Sbjct: 1   MADNFDHLTQTHLPFHSIDPRSLLLHQNSATHHYFPLQLTAETFSMERGPRYRAYAELRE 60

Query: 61  SKLRRRNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKP 120
           SKLR RN+ Y DGE+PEK TPPAKKQV+F+GSETVRKRSA +AQSVPDFS+ LRKEN++P
Sbjct: 61  SKLRLRNSMYRDGEQPEKSTPPAKKQVRFVGSETVRKRSATVAQSVPDFSSVLRKENKRP 120

Query: 121 PAAALPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFE 180
           P   L PVMEMTPPGKTWGKNN+G   +NSRGSKSASAGEKR   GGGL AARKSYAGFE
Sbjct: 121 P-PGLSPVMEMTPPGKTWGKNNIGGISANSRGSKSASAGEKR---GGGLAAARKSYAGFE 180

Query: 181 ELKGFSTAAANAINGEIRR-GGRKGKTVLGIRQI 209
           ELKGFSTAAANAINGE +R GGR+GKTVLG+RQI
Sbjct: 181 ELKGFSTAAANAINGENKRGGGRRGKTVLGVRQI 210

[Close]

BLAST of MS013212.1 vs. ExPASy TrEMBL
Match: A0A6J1D4H7 (uncharacterized protein LOC111016939 OS=Momordica charantia OX=3673 GN=LOC111016939 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.2e-106
Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 0


Query: 1   MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR 60
           MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR
Sbjct: 1   MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR 60

Query: 61  RNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKPPAAAL 120
           RNARYCDGE PEKPTPPAKKQVKFLGSETVRKRSAA+AQSVPDFSAALRKENRKPPAAAL
Sbjct: 61  RNARYCDGEAPEKPTPPAKKQVKFLGSETVRKRSAAVAQSVPDFSAALRKENRKPPAAAL 120

Query: 121 PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF 180
           PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF
Sbjct: 121 PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF 180

Query: 181 STAAANAINGEIRRGGRKGKTVLGIRQI 209
           STAAANAINGEIRRGGRKGKTVLGIRQI
Sbjct: 181 STAAANAINGEIRRGGRKGKTVLGIRQI 208

[Close]

BLAST of MS013212.1 vs. ExPASy TrEMBL
Match: A0A0A0L9P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258110 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.3e-78
Identity = 166/208 (79.81%), Postives = 174/208 (83.65%), Query Frame = 0


Query: 1   MADQIDHLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRR 60
           MA +  HLPFH+ID RSLLLHQNS AD PISL LT   FSMERGPRYRAYAELRESKLR 
Sbjct: 1   MAHKFPHLPFHSIDSRSLLLHQNSAADHPISLHLTPEPFSMERGPRYRAYAELRESKLRL 60

Query: 61  RNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKPPAAAL 120
           RNA Y   E PEK TPP KKQVKFLGSETVRKRSA +AQSVPDFSA LRKENRKPP   L
Sbjct: 61  RNAMYRHDEHPEKSTPPPKKQVKFLGSETVRKRSATVAQSVPDFSAVLRKENRKPPPGML 120

Query: 121 PPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGF 180
            PVMEMTPPGKTWGK N+G   + SRGSKSASAGEKR   GGGLTA RKSYAGFEELKGF
Sbjct: 121 SPVMEMTPPGKTWGK-NIGGLSTTSRGSKSASAGEKR---GGGLTAVRKSYAGFEELKGF 180

Query: 181 STAAANAINGEIRRGGRKGKTVLGIRQI 209
           STAAANAINGE R+GGR+GKTVLG+RQI
Sbjct: 181 STAAANAINGENRKGGRRGKTVLGVRQI 204

[Close]

BLAST of MS013212.1 vs. ExPASy TrEMBL
Match: A0A6J1KFU5 (uncharacterized protein LOC111492844 OS=Cucurbita maxima OX=3661 GN=LOC111492844 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 164/214 (76.64%), Postives = 180/214 (84.11%), Query Frame = 0


Query: 1   MADQID-----HLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRE 60
           MAD  D     HLPFH+IDPRSLLLHQNS       L+LTA +FSMERGPRYRAYAELRE
Sbjct: 1   MADNFDHLTQTHLPFHSIDPRSLLLHQNSATHHYFPLQLTAETFSMERGPRYRAYAELRE 60

Query: 61  SKLRRRNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKP 120
           SKLR RN+ Y DGE+PEK TPPAKKQV+F+GSETVRKRSA +AQSVPDFS+ LRKEN++P
Sbjct: 61  SKLRLRNSMYRDGEQPEKSTPPAKKQVRFVGSETVRKRSATVAQSVPDFSSVLRKENKRP 120

Query: 121 PAAALPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFE 180
           P   L PVMEMTPPGKTWGKNN+G   +NSRGSKSASAGEKR   GGGL AARKSYAGFE
Sbjct: 121 P-PGLSPVMEMTPPGKTWGKNNIGGISANSRGSKSASAGEKR---GGGLAAARKSYAGFE 180

Query: 181 ELKGFSTAAANAINGEIRR-GGRKGKTVLGIRQI 209
           ELKGFSTAAANAINGE +R GGR+GKTVLG+RQI
Sbjct: 181 ELKGFSTAAANAINGENKRGGGRRGKTVLGVRQI 210

[Close]

BLAST of MS013212.1 vs. ExPASy TrEMBL
Match: A0A6J1GA97 (uncharacterized protein LOC111452204 OS=Cucurbita moschata OX=3662 GN=LOC111452204 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 166/215 (77.21%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MADQID-----HLPFHAIDPRSLLLHQNSGADQPISLRLTAGSFSMERGPRYRAYAELRE 60
           MAD  D     HL FH+IDPRSLLLHQNS       L+LTA +FSMERGPRYRAYAELRE
Sbjct: 1   MADNFDHQSQTHLSFHSIDPRSLLLHQNSATHHYFPLQLTAETFSMERGPRYRAYAELRE 60

Query: 61  SKLRRRNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKP 120
           SKLR RNA Y DGE+PEK TPPAKKQV+F+GSETVRKRSA +AQSVPDFSA LRKENR+P
Sbjct: 61  SKLRLRNAMYRDGEQPEKSTPPAKKQVRFVGSETVRKRSATVAQSVPDFSAVLRKENRRP 120

Query: 121 PAAALPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFE 180
           P   L PVMEMTPPGKTWGKNN+G   +NSRGSKSASAGEKR   GGGL AARKSYAGFE
Sbjct: 121 P-PGLSPVMEMTPPGKTWGKNNIGGISANSRGSKSASAGEKR---GGGLAAARKSYAGFE 180

Query: 181 ELKGFSTAAANAINGEIRR--GGRKGKTVLGIRQI 209
           ELKGFSTAAANAINGE +R  GGR+GKTVLG+RQI
Sbjct: 181 ELKGFSTAAANAINGENKRGGGGRRGKTVLGVRQI 211

[Close]

BLAST of MS013212.1 vs. ExPASy TrEMBL
Match: A0A5A7U2K6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001060 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 163/209 (77.99%), Postives = 172/209 (82.30%), Query Frame = 0


Query: 1   MADQIDHLPFHAIDPRSLLLHQNSGA-DQPISLRLTAGSFSMERGPRYRAYAELRESKLR 60
           MAD+  HLPFH+ID RSLLLHQNS A D PISL LT   FSMERGPRY+AYAELRESKLR
Sbjct: 1   MADKFHHLPFHSIDSRSLLLHQNSAATDHPISLHLTPEPFSMERGPRYKAYAELRESKLR 60

Query: 61  RRNARYCDGEEPEKPTPPAKKQVKFLGSETVRKRSAAMAQSVPDFSAALRKENRKPPAAA 120
            RNA Y   E PEK TPP KKQ+KFLGSETVRKRSA +AQSVPDFSA LRKENRKPP   
Sbjct: 61  FRNAMYRHDEHPEKSTPPPKKQIKFLGSETVRKRSATVAQSVPDFSAVLRKENRKPPPGM 120

Query: 121 LPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKG 180
           L PVMEMTPPGKTWGK N+G   +NSRGSKSASAGEKR   GGGLT  RKSYAGFEELKG
Sbjct: 121 LSPVMEMTPPGKTWGK-NMGGLSTNSRGSKSASAGEKR---GGGLTTVRKSYAGFEELKG 180

Query: 181 FSTAAANAINGEIRRGGRKGKTVLGIRQI 209
           FSTA A AINGE R+GGRKGKTVLG RQ+
Sbjct: 181 FSTATAKAINGENRKGGRKGKTVLGSRQV 205

[Close]

BLAST of MS013212.1 vs. TAIR 10
Match: AT5G38300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-23
Identity = 104/257 (40.47%), Postives = 129/257 (50.19%), Query Frame = 0


Query: 10  FHAIDPRSLLLHQNSGADQPISLRLTAGSFS-MERGPRYRAYAELRESKLR-RRNARYCD 69
           F ++DP SL+L QNS   Q   L+L    FS  ERGPRY  Y+ LRESKLR +R+ +   
Sbjct: 14  FFSVDPMSLILSQNSDTHQ---LKLLLDGFSGFERGPRYDEYSRLRESKLRMKRDFQKFL 73

Query: 70  GEEPEKPTPPAKKQVKFLGS----------------------------------ETVRKR 129
            EE E   P  KKQV+F G+                                  E V+K+
Sbjct: 74  EEEDEVEEPRIKKQVRFEGNSVNSQEGDKFSPEKKKQSRFEGISVISQEDRFSPEKVKKQ 133

Query: 130 S------------AAMAQSVPDFSAALRKENRKPPAAALPPVMEMTPPGKTWGKNNVGQG 189
           S            +++AQSVPDFSA +RKENR+P       +  +TPP  T    N G  
Sbjct: 134 SRFGFSPLKKAVPSSLAQSVPDFSAVIRKENRRP-----VNINTITPPPPTSKSRNGGVL 193

Query: 190 L-SNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELKGFSTAAANAIN--GEIRRGGRK 209
             S SRGSKSASAGEK+      +  ARKSYA  E+LK  S AAA+AIN  G    GGRK
Sbjct: 194 TGSASRGSKSASAGEKKSKGMMMMGMARKSYANVEDLKKISMAAASAINGGGGGGGGGRK 253

[Close]

BLAST of MS013212.1 vs. TAIR 10
Match: AT1G67035.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38300.1). )

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-20
Identity = 95/224 (42.41%), Postives = 117/224 (52.23%), Query Frame = 0


Query: 17  SLLLHQN--SGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRRR----------NAR 76
           SLL   N  S   Q + L +  G +  ERG RY  YA LRESKLR +            R
Sbjct: 12  SLLFPVNPMSDTQQKLKLLVDNGDYGFERGSRYGEYARLRESKLRMKRDFEKILKEEQVR 71

Query: 77  YCDGEEPEKPTPPAKKQVKFLGSETVRK----RSAAMAQSVPDFSAALRKENRKPPAAA- 136
           +    E E    P KK  +F  +   RK     S+++AQSVPDFS+ +RKENR+PP  + 
Sbjct: 72  FGFTREEEIRVLPEKK-TRFGFNPNQRKTSSSSSSSLAQSVPDFSSMIRKENRRPPVNSN 131

Query: 137 -LPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELK 196
            LP   E+TPP        V  G S  RGS SASAGEK+     G+   RKSYA  ++LK
Sbjct: 132 LLPRRTELTPPSMKSRNAAVFAG-SVIRGSVSASAGEKK-----GIGMMRKSYAAVDDLK 191

Query: 197 GFSTAAANAIN--GEIRR-----GGRK-------GKTVLGIRQI 209
             S AAA+AIN  G  RR     GGRK       G+T+LG RQI
Sbjct: 192 KISMAAASAINGGGGKRRSIGGGGGRKSLGGGGGGRTILGYRQI 228

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BLAST of MS013212.1 vs. TAIR 10
Match: AT1G67035.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 7.4e-14
Identity = 80/210 (38.10%), Postives = 98/210 (46.67%), Query Frame = 0


Query: 17  SLLLHQN--SGADQPISLRLTAGSFSMERGPRYRAYAELRESKLRRR----------NAR 76
           SLL   N  S   Q + L +  G +  ERG RY  YA LRESKLR +            R
Sbjct: 12  SLLFPVNPMSDTQQKLKLLVDNGDYGFERGSRYGEYARLRESKLRMKRDFEKILKEEQVR 71

Query: 77  YCDGEEPEKPTPPAKKQVKFLGSETVRK----RSAAMAQSVPDFSAALRKENRKPPAAA- 136
           +    E E    P KK  +F  +   RK     S+++AQSVPDFS+ +RKENR+PP  + 
Sbjct: 72  FGFTREEEIRVLPEKK-TRFGFNPNQRKTSSSSSSSLAQSVPDFSSMIRKENRRPPVNSN 131

Query: 137 -LPPVMEMTPPGKTWGKNNVGQGLSNSRGSKSASAGEKRGGAGGGLTAARKSYAGFEELK 196
            LP   E+TPP        V  G S  RGS SASAGEK+GG        RKS        
Sbjct: 132 LLPRRTELTPPSMKSRNAAVFAG-SVIRGSVSASAGEKKGG--------RKSLG------ 189

Query: 197 GFSTAAANAINGEIRRGGRKGKTVLGIRQI 209
                           GG  G+T+LG RQI
Sbjct: 192 ----------------GGGGGRTILGYRQI 189

The following BLAST results are available for this feature:

BLAST of MS013212.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148227.1	4.6e-106	99.04	uncharacterized protein LOC111016939 [Momordica charantia]	[more]
XP_011651352.1	6.9e-78	79.81	uncharacterized protein LOC101205045 [Cucumis sativus] >KGN57709.1 hypothetical ...	[more]
XP_038903179.1	9.0e-78	80.00	uncharacterized protein LOC120089840 [Benincasa hispida]	[more]
KAG7036757.1	2.9e-76	77.21	hypothetical protein SDJN02_00377, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022998093.1	2.9e-76	76.64	uncharacterized protein LOC111492844 [Cucurbita maxima]	[more]

BLAST of MS013212.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS013212.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4H7	2.2e-106	99.04	uncharacterized protein LOC111016939 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A0A0L9P8	3.3e-78	79.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258110 PE=4 SV=1	[more]
A0A6J1KFU5	1.4e-76	76.64	uncharacterized protein LOC111492844 OS=Cucurbita maxima OX=3661 GN=LOC111492844...	[more]
A0A6J1GA97	1.4e-76	77.21	uncharacterized protein LOC111452204 OS=Cucurbita moschata OX=3662 GN=LOC1114522...	[more]
A0A5A7U2K6	1.5e-75	77.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MS013212.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38300.1	6.7e-23	40.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67035.2	1.8e-20	42.41	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67035.1	7.4e-14	38.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..151
None	No IPR available	PANTHER	PTHR37708:SF2	SUBFAMILY NOT NAMED	coord: 9..207
None	No IPR available	PANTHER	PTHR37708	FAMILY NOT NAMED	coord: 9..207

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013212	MS013212	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013212.1-cds	MS013212.1-cds-scaffold459:1241198..1241821	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013212.1	MS013212.1-protein	polypeptide