MS013102.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013102.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CRC domain-containing protein TSO1-like
Location	scaffold459: 197844 .. 198014 (+)
Sequence length	171
RNA-Seq Expression	MS013102.1
Synteny	MS013102.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGTGAGTGCTTTTCAGCTGGTGTTTATTGTGGAAATTCTTGTGGCTGTAAAGATTGCATCAACAAAATTGAATATGAGGATAAAGTTAAGTCTGTAAGTCGCCAAATTCAATCAAAAAATGCCTTTGCTTTTGCACCAAAGGTCACGAGGCAATCACTTGATTTTCCA

mRNA sequence

TATTGTGAGTGCTTTTCAGCTGGTGTTTATTGTGGAAATTCTTGTGGCTGTAAAGATTGCATCAACAAAATTGAATATGAGGATAAAGTTAAGTCTGTAAGTCGCCAAATTCAATCAAAAAATGCCTTTGCTTTTGCACCAAAGGTCACGAGGCAATCACTTGATTTTCCA

Coding sequence (CDS)

TATTGTGAGTGCTTTTCAGCTGGTGTTTATTGTGGAAATTCTTGTGGCTGTAAAGATTGCATCAACAAAATTGAATATGAGGATAAAGTTAAGTCTGTAAGTCGCCAAATTCAATCAAAAAATGCCTTTGCTTTTGCACCAAAGGTCACGAGGCAATCACTTGATTTTCCA

Protein sequence

YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP

Homology

[Close]

BLAST of MS013102.1 vs. NCBI nr
Match: XP_022153578.1 (CRC domain-containing protein TSO1-like [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 5.4e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP
Sbjct: 270 YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 326

[Close]

BLAST of MS013102.1 vs. NCBI nr
Match: PIA42522.1 (hypothetical protein AQUCO_02000165v1 [Aquilegia coerulea])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 537 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 593

[Close]

BLAST of MS013102.1 vs. NCBI nr
Match: PIA42518.1 (hypothetical protein AQUCO_02000165v1 [Aquilegia coerulea])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 538 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 594

[Close]

BLAST of MS013102.1 vs. NCBI nr
Match: PIA42519.1 (hypothetical protein AQUCO_02000165v1 [Aquilegia coerulea])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 559 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 615

[Close]

BLAST of MS013102.1 vs. NCBI nr
Match: KAF5206309.1 (tesmin/TSO1-like CXC [Thalictrum thalictroides])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 548 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 604

[Close]

BLAST of MS013102.1 vs. ExPASy Swiss-Prot
Match: F4JIF5 (Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana OX=3702 GN=TCX2 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-11
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECF+AGVYC   C C DC NK  +ED V +  +QI+S+N  AFAPKV R S
Sbjct: 388 YCECFAAGVYCIEPCSCIDCFNKPIHEDVVLATRKQIESRNPLAFAPKVIRNS 440

[Close]

BLAST of MS013102.1 vs. ExPASy Swiss-Prot
Match: Q9LUI3 (CRC domain-containing protein TSO1 OS=Arabidopsis thaliana OX=3702 GN=TSO1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-10
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECF+AGVYC   C C DC NK  +E+ V +  +QI+S+N  AFAPKV R +
Sbjct: 414 YCECFAAGVYCIEPCSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNA 466

[Close]

BLAST of MS013102.1 vs. ExPASy Swiss-Prot
Match: Q8L548 (Protein tesmin/TSO1-like CXC 3 OS=Arabidopsis thaliana OX=3702 GN=TCX3 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-09
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECF+AG YC   C C +C NK  ++D V +  +QI+S+N  AFAPKV R S
Sbjct: 341 YCECFAAGFYCIEPCSCINCFNKPIHKDVVLATRKQIESRNPLAFAPKVIRNS 393

[Close]

BLAST of MS013102.1 vs. ExPASy Swiss-Prot
Match: Q84JZ8 (Protein tesmin/TSO1-like CXC 4 OS=Arabidopsis thaliana OX=3702 GN=TCX4 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-09
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECFSAG++CG  C C++C NK  +ED V      I+++N  AFAPKV   S
Sbjct: 466 YCECFSAGLFCGEPCSCQNCFNKPIHEDLVMKSREVIKARNPLAFAPKVVSTS 518

[Close]

BLAST of MS013102.1 vs. ExPASy TrEMBL
Match: A0A6J1DHU8 (CRC domain-containing protein TSO1-like OS=Momordica charantia OX=3673 GN=LOC111021049 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP
Sbjct: 270 YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 326

[Close]

BLAST of MS013102.1 vs. ExPASy TrEMBL
Match: A0A2G5DG74 (CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 560 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 616

[Close]

BLAST of MS013102.1 vs. ExPASy TrEMBL
Match: A0A2G5DG64 (CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 560 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 616

[Close]

BLAST of MS013102.1 vs. ExPASy TrEMBL
Match: A0A2G5DG99 (CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 560 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 616

[Close]

BLAST of MS013102.1 vs. ExPASy TrEMBL
Match: A0A2G5DGB6 (CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQSLDFP 58
           YCECF+AG+YC   C C++C NK +YEDKV    +QI+S+N  AFAPK+ R+  D P
Sbjct: 537 YCECFAAGIYCAEPCACQECFNKPQYEDKVLETRKQIESRNPLAFAPKIVRRVTDSP 593

[Close]

BLAST of MS013102.1 vs. TAIR 10
Match: AT4G14770.1 (TESMIN/TSO1-like CXC 2 )

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-12
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECF+AGVYC   C C DC NK  +ED V +  +QI+S+N  AFAPKV R S
Sbjct: 388 YCECFAAGVYCIEPCSCIDCFNKPIHEDVVLATRKQIESRNPLAFAPKVIRNS 440

[Close]

BLAST of MS013102.1 vs. TAIR 10
Match: AT3G22780.1 (Tesmin/TSO1-like CXC domain-containing protein )

HSP 1 Score: 66.2 bits (160), Expect = 9.5e-12
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECF+AGVYC   C C DC NK  +E+ V +  +QI+S+N  AFAPKV R +
Sbjct: 414 YCECFAAGVYCIEPCSCIDCFNKPIHEETVLATRKQIESRNPLAFAPKVIRNA 466

[Close]

BLAST of MS013102.1 vs. TAIR 10
Match: AT3G22760.1 (Tesmin/TSO1-like CXC domain-containing protein )

HSP 1 Score: 63.2 bits (152), Expect = 8.0e-11
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECF+AG YC   C C +C NK  ++D V +  +QI+S+N  AFAPKV R S
Sbjct: 341 YCECFAAGFYCIEPCSCINCFNKPIHKDVVLATRKQIESRNPLAFAPKVIRNS 393

[Close]

BLAST of MS013102.1 vs. TAIR 10
Match: AT3G04850.1 (Tesmin/TSO1-like CXC domain-containing protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-10
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 1   YCECFSAGVYCGNSCGCKDCINKIEYEDKVKSVSRQIQSKNAFAFAPKVTRQS 54
           YCECFSAG++CG  C C++C NK  +ED V      I+++N  AFAPKV   S
Sbjct: 466 YCECFSAGLFCGEPCSCQNCFNKPIHEDLVMKSREVIKARNPLAFAPKVVSTS 518

The following BLAST results are available for this feature:

BLAST of MS013102.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153578.1	5.4e-25	100.00	CRC domain-containing protein TSO1-like [Momordica charantia]	[more]
PIA42522.1	2.6e-11	54.39	hypothetical protein AQUCO_02000165v1 [Aquilegia coerulea]	[more]
PIA42518.1	2.6e-11	54.39	hypothetical protein AQUCO_02000165v1 [Aquilegia coerulea]	[more]
PIA42519.1	2.6e-11	54.39	hypothetical protein AQUCO_02000165v1 [Aquilegia coerulea]	[more]
KAF5206309.1	2.6e-11	54.39	tesmin/TSO1-like CXC [Thalictrum thalictroides]	[more]

BLAST of MS013102.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIF5	2.7e-11	58.49	Protein tesmin/TSO1-like CXC 2 OS=Arabidopsis thaliana OX=3702 GN=TCX2 PE=1 SV=1	[more]
Q9LUI3	1.3e-10	54.72	CRC domain-containing protein TSO1 OS=Arabidopsis thaliana OX=3702 GN=TSO1 PE=1 ...	[more]
Q8L548	1.1e-09	52.83	Protein tesmin/TSO1-like CXC 3 OS=Arabidopsis thaliana OX=3702 GN=TCX3 PE=1 SV=1	[more]
Q84JZ8	1.9e-09	50.94	Protein tesmin/TSO1-like CXC 4 OS=Arabidopsis thaliana OX=3702 GN=TCX4 PE=1 SV=1	[more]

BLAST of MS013102.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHU8	2.6e-25	100.00	CRC domain-containing protein TSO1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A2G5DG74	1.3e-11	54.39	CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v...	[more]
A0A2G5DG64	1.3e-11	54.39	CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v...	[more]
A0A2G5DG99	1.3e-11	54.39	CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v...	[more]
A0A2G5DGB6	1.3e-11	54.39	CRC domain-containing protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_02000165v...	[more]

BLAST of MS013102.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14770.1	1.9e-12	58.49	TESMIN/TSO1-like CXC 2	[more]
AT3G22780.1	9.5e-12	54.72	Tesmin/TSO1-like CXC domain-containing protein	[more]
AT3G22760.1	8.0e-11	52.83	Tesmin/TSO1-like CXC domain-containing protein	[more]
AT3G04850.1	1.4e-10	50.94	Tesmin/TSO1-like CXC domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005172	CRC domain	PFAM	PF03638	TCR	coord: 1..23 e-value: 3.0E-6 score: 27.4
IPR005172	CRC domain	PROSITE	PS51634	CRC	coord: 1..57 score: 14.068348
IPR044522	CRC domain-containing protein TSO1-like	PANTHER	PTHR46159	PROTEIN TESMIN/TSO1-LIKE CXC 2	coord: 1..54

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013102	MS013102	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013102.1-cds	MS013102.1-cds-scaffold459:197844..198014	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013102.1	MS013102.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity