MS011760.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS011760.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold11: 478810 .. 479050 (+)
Sequence length	237
RNA-Seq Expression	MS011760.1
Synteny	MS011760.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGACTTCTTATGGGATGGAGTTAATGAAAGGGGTGGTTCCCATTTGATCAGGTGGGAGACCGTTGTGCATACTTTGGCTTTGGGGGGTTTGGGCATTGGTAAGTTGGTAACCTTAGGTTACGTAAGCCTTGTTGACCAAATAGTTGTGGCATTTCTTTAAGGAACTGGAAACTTTATGGCGTAGGATTATTTTGAGTAAATATGGTCCACACCCTATTGAGACAAGTCTCGAGTTGCAC

mRNA sequence

AGGGACTTCTTATGGGATGGAGTTAATGAAAGGGGTGGTTCCCATTTGATCAGGTGGGAGACCGTTGTGCATACTTTGGCTTTGGGGGGTTTGGGCATTGGTAAGTTGGTAACCTTAGGTTACGTAAGCCTTGTTGACCAATTGTGGCATTTCTTTAAGGAACTGGAAACTTTATGGCGTAGGATTATTTTGAGTAAATATGGTCCACACCCTATTGAGACAAGTCTCGAGTTGCAC

Coding sequence (CDS)

AGGGACTTCTTATGGGATGGAGTTAATGAAAGGGGTGGTTCCCATTTGATCAGGTGGGAGACCGTTGTGCATACTTTGGCTTTGGGGGGTTTGGGCATTGGTAAGTTGGTAACCTTAGGTTACGTAAGCCTTGTTGACCAATTGTGGCATTTCTTTAAGGAACTGGAAACTTTATGGCGTAGGATTATTTTGAGTAAATATGGTCCACACCCTATTGAGACAAGTCTCGAGTTGCAC

Protein sequence

RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWRRIILSKYGPHPIETSLELH

Homology

[Close]

BLAST of MS011760.1 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW+GV E GG+HL+ W+ V   L  GGLG+G L       L   LW FF E   LWR
Sbjct: 197 RDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALWR 256

Query: 61  RIILSKYGPHP 72
           +II+SKY  HP
Sbjct: 257 KIIVSKYERHP 267

[Close]

BLAST of MS011760.1 vs. NCBI nr
Match: RVX06748.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HLIRWE V  +  +GGLG GK      V L   LW F +E   LW 
Sbjct: 402 RDFLWSGVEEGNKDHLIRWEVVSRSREMGGLGFGKTSMRNSVLLRKWLWRFPRERSGLWH 461

Query: 61  RIILSKYGPHP 72
           ++I S YG HP
Sbjct: 462 KVIASIYGTHP 472

[Close]

BLAST of MS011760.1 vs. NCBI nr
Match: CAN83427.1 (hypothetical protein VITISV_009103 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V  +  +GGLGIGK+       L   LW F +E  +LW 
Sbjct: 524 RDFLWSGVGEGKRDHLVRWEAVCKSRVIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 583

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 584 QVILSIYGTH 593

[Close]

BLAST of MS011760.1 vs. NCBI nr
Match: RVX14083.1 (Histone deacetylase 15 [Vitis vinifera])

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-10
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V     LGGLGIGK+       L   LW F +E  +LW 
Sbjct: 439 RDFLWSGVGEGKRDHLVRWEAVCKPRVLGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 498

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 499 QVILSIYGTH 508

[Close]

BLAST of MS011760.1 vs. NCBI nr
Match: RVW15726.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 73.9 bits (180), Expect = 6.8e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V    ++GGLGIGK+       L   LW F +E  +LW 
Sbjct: 535 RDFLWSGVGEGKRDHLVRWEAVSKPRSIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 594

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 595 QVILSLYGTH 604

[Close]

BLAST of MS011760.1 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.4e-13
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW+GV E GG+HL+ W+ V   L  GGLG+G L       L   LW FF E   LWR
Sbjct: 197 RDFLWEGVEEGGGAHLVNWKEVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALWR 256

Query: 61  RIILSKYGPHP 72
           +II+SKY  HP
Sbjct: 257 KIIVSKYERHP 267

[Close]

BLAST of MS011760.1 vs. ExPASy TrEMBL
Match: A0A438JCR4 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_806 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HLIRWE V  +  +GGLG GK      V L   LW F +E   LW 
Sbjct: 402 RDFLWSGVEEGNKDHLIRWEVVSRSREMGGLGFGKTSMRNSVLLRKWLWRFPRERSGLWH 461

Query: 61  RIILSKYGPHP 72
           ++I S YG HP
Sbjct: 462 KVIASIYGTHP 472

[Close]

BLAST of MS011760.1 vs. ExPASy TrEMBL
Match: A5BN97 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_009103 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V  +  +GGLGIGK+       L   LW F +E  +LW 
Sbjct: 524 RDFLWSGVGEGKRDHLVRWEAVCKSRVIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 583

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 584 QVILSIYGTH 593

[Close]

BLAST of MS011760.1 vs. ExPASy TrEMBL
Match: A0A438JYQ9 (Histone deacetylase OS=Vitis vinifera OX=29760 GN=HDA15_1 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-10
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V     LGGLGIGK+       L   LW F +E  +LW 
Sbjct: 439 RDFLWSGVGEGKRDHLVRWEAVCKPRVLGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 498

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 499 QVILSIYGTH 508

[Close]

BLAST of MS011760.1 vs. ExPASy TrEMBL
Match: A5BYB2 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_031500 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.3e-10
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1   RDFLWDGVNERGGSHLIRWETVVHTLALGGLGIGKLVTLGYVSLVDQLWHFFKELETLWR 60
           RDFLW GV E    HL+RWE V    ++GGLGIGK+       L   LW F +E  +LW 
Sbjct: 582 RDFLWSGVGEGKRDHLVRWEAVCKPRSIGGLGIGKIPLRNRALLGKWLWRFPRESTSLWH 641

Query: 61  RIILSKYGPH 71
           ++ILS YG H
Sbjct: 642 QVILSIYGTH 651

The following BLAST results are available for this feature:

BLAST of MS011760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151711.1	1.1e-12	52.11	uncharacterized protein LOC111019624 [Momordica charantia]	[more]
RVX06748.1	4.0e-10	49.30	putative ribonuclease H protein [Vitis vinifera]	[more]
CAN83427.1	5.2e-10	48.57	hypothetical protein VITISV_009103 [Vitis vinifera]	[more]
RVX14083.1	5.2e-10	50.00	Histone deacetylase 15 [Vitis vinifera]	[more]
RVW15726.1	6.8e-10	48.57	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of MS011760.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFI2	5.4e-13	52.11	uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A438JCR4	1.9e-10	49.30	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_806 P...	[more]
A5BN97	2.5e-10	48.57	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438JYQ9	2.5e-10	50.00	Histone deacetylase OS=Vitis vinifera OX=29760 GN=HDA15_1 PE=4 SV=1	[more]
A5BYB2	3.3e-10	48.57	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of MS011760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS011760	MS011760	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS011760.1-cds	MS011760.1-cds-scaffold11:478810..478950	CDS
MS011760.1-cds	MS011760.1-cds-scaffold11:478955..479050	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS011760.1	MS011760.1-protein	polypeptide