MS011594.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS011594.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein PELPK1-like
Location	scaffold239: 3108886 .. 3109266 (+)
Sequence length	381
RNA-Seq Expression	MS011594.1
Synteny	MS011594.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTTTCAAGGTTTGCTTGAAGATAATATTGTTTGTATCCTTGTCATTGATAGGCACCAACATGAGCTTTGCAAGTCGTCGCCTTCTCGATACTCCGGCAGCTCCACCTCCATTTCTGTCCTTATCTCCAATTCCTCCGCTGCCATTCCCTCCAACATCATTACAGCCGCTGCCATCTGTACCGACATTGCCTCCCCTTCCTACGATCCAACCGCTGCCGAAGGCCTTGCCTCAGCTTCCTCCAACGCCAACCCTGCAAGCACTGCCTCCACTGCCTTCAGCACCAGCAGTGCCAAAGGCTACCTTGCCCCCTTTGCCACCATTACCAACAATTCCTTCAGTTCCTATCACACCAACAACCGTGGCGTTGCCGGCT

mRNA sequence

ATGGTTGCTTTCAAGGTTTGCTTGAAGATAATATTGTTTGTATCCTTGTCATTGATAGGCACCAACATGAGCTTTGCAAGTCGTCGCCTTCTCGATACTCCGGCAGCTCCACCTCCATTTCTGTCCTTATCTCCAATTCCTCCGCTGCCATTCCCTCCAACATCATTACAGCCGCTGCCATCTGTACCGACATTGCCTCCCCTTCCTACGATCCAACCGCTGCCGAAGGCCTTGCCTCAGCTTCCTCCAACGCCAACCCTGCAAGCACTGCCTCCACTGCCTTCAGCACCAGCAGTGCCAAAGGCTACCTTGCCCCCTTTGCCACCATTACCAACAATTCCTTCAGTTCCTATCACACCAACAACCGTGGCGTTGCCGGCT

Coding sequence (CDS)

ATGGTTGCTTTCAAGGTTTGCTTGAAGATAATATTGTTTGTATCCTTGTCATTGATAGGCACCAACATGAGCTTTGCAAGTCGTCGCCTTCTCGATACTCCGGCAGCTCCACCTCCATTTCTGTCCTTATCTCCAATTCCTCCGCTGCCATTCCCTCCAACATCATTACAGCCGCTGCCATCTGTACCGACATTGCCTCCCCTTCCTACGATCCAACCGCTGCCGAAGGCCTTGCCTCAGCTTCCTCCAACGCCAACCCTGCAAGCACTGCCTCCACTGCCTTCAGCACCAGCAGTGCCAAAGGCTACCTTGCCCCCTTTGCCACCATTACCAACAATTCCTTCAGTTCCTATCACACCAACAACCGTGGCGTTGCCGGCT

Protein sequence

MVAFKVCLKIILFVSLSLIGTNMSFASRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPLPSVPTLPPLPTIQPLPKALPQLPPTPTLQALPPLPSAPAVPKATLPPLPPLPTIPSVPITPTTVALPA

Homology

[Close]

BLAST of MS011594.1 vs. NCBI nr
Match: XP_023518135.1 (RNA-binding protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 6.6e-23
Identity = 87/135 (64.44%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 1   MVAFKVCLKIILFVSLSLIGTNMSFASR-RLLDTPAAPPPFLSLSPIPPLPFPPTS---- 60
           M AFK C K++LFV+LSL   NMSFA+R RLL TPAAPP      P+PPLPFPP S    
Sbjct: 1   MAAFKGCFKLLLFVTLSLACINMSFATRGRLLGTPAAPP------PVPPLPFPPKSLLPL 60

Query: 61  ----LQPLPSVPTLPPLPTIQPLPKALPQLPPTPTLQALPPLPSAPAVPKATLPPLPPLP 120
               L PLPS PTLPPLPTIQPLPK     PP      LPP PSAP + KATLPP+PPLP
Sbjct: 61  PKATLPPLPSTPTLPPLPTIQPLPK-----PP------LPPFPSAPTMAKATLPPMPPLP 118

Query: 121 TIPSVPITPTTVALP 127
           TIPSVP TPTTV LP
Sbjct: 121 TIPSVPTTPTTVPLP 118

[Close]

BLAST of MS011594.1 vs. NCBI nr
Match: KAG6594900.1 (hypothetical protein SDJN03_11453, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 84/134 (62.69%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 1   MVAFKVCLKIILFVSLSLIGTNMSFAS-RRLLDTPAAPPPFLSLSPIPPLPFPPTS---- 60
           M AFK C K++LFV+LSL   NMSFA+ R LLDTPAAPP      P+PPLPFPP S    
Sbjct: 1   MAAFKGCFKLLLFVTLSLACINMSFATPRHLLDTPAAPP------PVPPLPFPPKSLLPL 60

Query: 61  ----LQPLPSVPTLPPLPTIQPLPKALPQLPPTPTLQALPPLPSAPAVPKATLPPLPPLP 120
               L PLPS P L PLPTIQ LPK     PP      LPP PSAP +PKATLPP+PPLP
Sbjct: 61  PKATLPPLPSTPALLPLPTIQLLPK-----PP------LPPFPSAPTMPKATLPPMPPLP 117

Query: 121 TIPSVPITPTTVAL 126
           TIPSVP TPTTV L
Sbjct: 121 TIPSVPTTPTTVPL 117

[Close]

BLAST of MS011594.1 vs. NCBI nr
Match: XP_019073993.1 (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Vitis vinifera])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 7   CLKIILFVSLSLIGTNMSFASRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPLPSVPTLP 66
           C+ + L ++LSL+  +++ A R LLDTPAAPPP L+L  IP LP P  +L PLP++PTLP
Sbjct: 5   CITVSLVLALSLLSMDVTLAGRHLLDTPAAPPPALTLPQIPSLPKP--TLPPLPAMPTLP 64

Query: 67  --PLPTIQPLPKALPQLPPTPTLQALPPLPSAPAVPKATLPPLPPLP-TIPSVPITPTTV 124
             PLP++  LPK  P LPP P+L   P LP+ P +P+  LPPLP +P TIPS P  PTT+
Sbjct: 65  TTPLPSVPTLPK--PTLPPLPSLPN-PTLPTIPTIPQLALPPLPTIPTTIPSFPTIPTTI 119

[Close]

BLAST of MS011594.1 vs. NCBI nr
Match: XP_031258972.1 (protein PELPK1-like [Pistacia vera])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 75/146 (51.37%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 1   MVAFKVCLKIILFVSLSLIGTNMSFASRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPLP 60
           M   K  L + L ++LS+   +MS A+R LLDTPAAPPP L+L  IPPL  P  +L PLP
Sbjct: 1   MAFSKDFLALCLLIALSISSIDMSLAARHLLDTPAAPPPALTLPTIPPL--PKATLPPLP 60

Query: 61  SVPTLP----------PLPTI--QP-LPKALPQLPPTPTLQ----ALPPLPSAPAVPKAT 120
           SVPTLP          PLPT+  QP LPK  P LPP P+ Q      P LP+ PA PK T
Sbjct: 61  SVPTLPKATLPPLPSTPLPTLPTQPTLPK--PTLPPLPSTQIPSLPQPTLPTIPATPKVT 120

Query: 121 LPPLP--PLPTIPSVPITPTTVALPA 128
           LPPLP  PLPTIP++P T  T+  P+
Sbjct: 121 LPPLPSTPLPTIPTIPTTIPTIPFPS 142

[Close]

BLAST of MS011594.1 vs. NCBI nr
Match: XP_031258976.1 (protein PELPK1-like [Pistacia vera])

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-11
Identity = 75/146 (51.37%), Postives = 90/146 (61.64%), Query Frame = 0


Query: 1   MVAFKVCLKIILFVSLSLIGTNMSFASRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPLP 60
           M   K  L + L ++LS+   +MS A+R LLDTPAAPPP L+L  IPPL  P  +L PLP
Sbjct: 1   MAFSKDFLALCLLIALSISCIDMSLAARHLLDTPAAPPPALTLPTIPPL--PKATLPPLP 60

Query: 61  SVPTLP----------PLPTI--QP-LPKALPQLPPTPTLQ----ALPPLPSAPAVPKAT 120
           SVPTLP          PLPT+  QP LPK  P LPP P+ Q      P LP+ PA PK T
Sbjct: 61  SVPTLPKATLPPLPSTPLPTLPTQPTLPK--PTLPPLPSTQIPSLPQPTLPTIPATPKVT 120

Query: 121 LPPLP--PLPTIPSVPITPTTVALPA 128
           LPPLP  PLPTIP++P T  T+  P+
Sbjct: 121 LPPLPSTPLPTIPTIPTTIPTIPFPS 142

[Close]

BLAST of MS011594.1 vs. ExPASy TrEMBL
Match: A0A0A0KJZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499070 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.0e-18
Identity = 79/130 (60.77%), Postives = 89/130 (68.46%), Query Frame = 0


Query: 1   MVAFKVCLKIILFVSLSLIGTNMSFA-SRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPL 60
           M  F  CLK +L VSLSL   NM+FA SRRLLDTPAAPPPFLS+ PIPPLP       PL
Sbjct: 1   MAVFNSCLKFLLIVSLSLASINMNFASSRRLLDTPAAPPPFLSIPPIPPLP-------PL 60

Query: 61  PSVPTLPPLPTIQPLPKALPQLPPTPTL--QALPPLPSAPAVPKATLPPLPPLPTIPSVP 120
           P   T+PPLP+      ALP LPP PTL    LPPLPSAPA+PKATLP LPPLPT+P +P
Sbjct: 61  PKA-TVPPLPS-----AALPPLPPMPTLPRATLPPLPSAPALPKATLPTLPPLPTMP-LP 116

Query: 121 ITPTTVALPA 128
             P +   P+
Sbjct: 121 TFPFSSPPPS 116

[Close]

BLAST of MS011594.1 vs. ExPASy TrEMBL
Match: F6HWB8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0407g00050 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 63/120 (52.50%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 7   CLKIILFVSLSLIGTNMSFASRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPLPSVPTLP 66
           C+ + L ++LSL+  +++ A R LLDTPAAPPP L+L  IP LP P  +L PLP++PTLP
Sbjct: 5   CITVSLVLALSLLSMDVTLAGRHLLDTPAAPPPALTLPQIPSLPKP--TLPPLPAMPTLP 64

Query: 67  --PLPTIQPLPKALPQLPPTPTLQALPPLPSAPAVPKATLPPLPPLP-TIPSVPITPTTV 124
             PLP++  LPK  P LPP P+L   P LP+ P +P+  LPPLP +P TIPS P  PTT+
Sbjct: 65  TTPLPSVPTLPK--PTLPPLPSLPN-PTLPTIPTIPQLALPPLPTIPTTIPSFPTIPTTI 119

[Close]

BLAST of MS011594.1 vs. ExPASy TrEMBL
Match: A0A2N9ENX9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4400 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 69/139 (49.64%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 7   CLKIILFVSLSLIGTNMSFASRRLLDTPAAPP--PFLSLSPIPPLP-FPPTSLQPLPSV- 66
           C  + L V+L+L  TN+S A+R+LLDTPA+PP  P ++L P+P +P  P  +L PLPS  
Sbjct: 7   CFLLSLVVALALASTNVSLAARQLLDTPASPPTLPMVTLPPLPSVPTLPQATLPPLPSTP 66

Query: 67  ------PTLPPLPTIQ-PLPKALP--QLPPTPTLQALPPLPSAPAVPKATLPPLPPLP-- 124
                 PTLPPLP+ Q P    LP   LPP PTL A P LP+ P +PK+TLP LPPLP  
Sbjct: 67  LPTLPKPTLPPLPSTQIPSLPTLPTTTLPPLPTLPAQPTLPAQPTLPKSTLPTLPPLPAT 126

[Close]

BLAST of MS011594.1 vs. ExPASy TrEMBL
Match: A0A7N2M228 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 75/142 (52.82%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MVAFKVCLKIILFVSLSLIGTNMSFASRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPLP 60
           M + K    + L V+LSL   NMSFA+R+LL TPAAPPP L+L  +P LP    +L PLP
Sbjct: 1   MASCKHVFMLALIVTLSLSSINMSFAARQLLQTPAAPPPALTLPTVPSLP----TLPPLP 60

Query: 61  SVPTLPPLPTIQPLPKA-LPQLPPTPTL--QALPPLPSA----------PAVPKATLPPL 120
           SVPTLP   T  PLP   LP LP  PTL    LPPLPS           P VPK TLPPL
Sbjct: 61  SVPTLPQ-ATSPPLPSTPLPTLPTQPTLPRTTLPPLPSTQIPSLPNPTLPTVPKVTLPPL 120

Query: 121 P--PLP----TIPSVPITPTTV 124
           P  PLP    TIPS+P  PTT+
Sbjct: 121 PATPLPTIPTTIPSIPTIPTTI 137

[Close]

BLAST of MS011594.1 vs. ExPASy TrEMBL
Match: A0A2N9ENZ8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4420 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.8e-11
Identity = 80/152 (52.63%), Postives = 94/152 (61.84%), Query Frame = 0


Query: 1   MVAFKVCLKIILFVSLSLIGTNMSFASRRLLDTPAAPPPFLSLSPIPPLPFPPTSLQPLP 60
           M ++K+   + L V+LSL   +MS A+R+LLDTPAAPPP L+L  IP L  P  +L PLP
Sbjct: 1   MASYKLVFMLSLMVTLSLSSIDMSLAARQLLDTPAAPPPALTLPTIPSL--PKATLPPLP 60

Query: 61  SVP-----TLPPLPTI--QP-LPK-ALPQLP--PTPTL--QALPPLPSA----------P 120
           SVP     TLPPLP++  QP LPK  LP LP  P PTL    LPPLPS           P
Sbjct: 61  SVPTLPKSTLPPLPSLPTQPTLPKTTLPPLPSIPLPTLPKSTLPPLPSTQIPTLPNPTLP 120

Query: 121 AVPKATLPPLP--PLP----TIPSVPITPTTV 124
            VPK TLPPLP  PLP    TIPS+P  PTT+
Sbjct: 121 TVPKVTLPPLPATPLPTIPTTIPSIPTIPTTI 150

[Close]

BLAST of MS011594.1 vs. TAIR 10
Match: AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein )

HSP 1 Score: 44.3 bits (103), Expect = 8.6e-05
Identity = 50/101 (49.50%), Postives = 59/101 (58.42%), Query Frame = 0


Query: 31  LDTPAAPP-PFL----SLSPIPPLPFPPT----SLQPLPSVPTLPPLPTIQPLPKALPQL 90
           + TP  PP P +    SL PIP +P PPT     L P P  PTLPP+PTI  LP  LP L
Sbjct: 281 IPTPTLPPNPLIPSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLP-PLPVL 340

Query: 91  PPTPTLQ--ALPPLPSAPAVPKATLPPLPPLPTIPSVPITP 121
           PP P +   +LPP P +  VP   LPP+P LP IP VP+ P
Sbjct: 341 PPVPIVNPPSLPPPPPSFPVP---LPPVPGLPGIPPVPLIP 377

The following BLAST results are available for this feature:

BLAST of MS011594.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518135.1	6.6e-23	64.44	RNA-binding protein 12-like [Cucurbita pepo subsp. pepo]	[more]
KAG6594900.1	1.0e-20	62.69	hypothetical protein SDJN03_11453, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_019073993.1	1.5e-11	52.50	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Vitis vinifera]	[more]
XP_031258972.1	1.5e-11	51.37	protein PELPK1-like [Pistacia vera]	[more]
XP_031258976.1	3.4e-11	51.37	protein PELPK1-like [Pistacia vera]	[more]

BLAST of MS011594.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS011594.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJZ2	9.0e-18	60.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499070 PE=4 SV=1	[more]
F6HWB8	7.3e-12	52.50	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0407g00050 PE=4 SV=...	[more]
A0A2N9ENX9	1.3e-11	49.64	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4400 PE=4 SV=1	[more]
A0A7N2M228	2.8e-11	52.82	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9ENZ8	2.8e-11	52.63	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4420 PE=4 SV=1	[more]

BLAST of MS011594.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15780.1	8.6e-05	49.50	Pollen Ole e 1 allergen and extensin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS011594	MS011594	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS011594.1-cds	MS011594.1-cds-scaffold239:3108886..3109266	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS011594.1	MS011594.1-protein	polypeptide