MS009568.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009568.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	scaffold813: 2351105 .. 2351276 (+)
Sequence length	171
RNA-Seq Expression	MS009568.1
Synteny	MS009568.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTAAGCACAACCATACATAACATAGAAATCACACTTGGGAAGGGGACAATTAGCTAGAGGAGCAGGTGTTGTAGTGAAACTGATCGCAGAAGAATGGAAATCAACCATATTAAAATTACCTCGTGGAGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACTGTC

mRNA sequence

ATGCCCTTAAGCACAACCATACATAACATAGAAATCACACTTGGGAAGGGGCAATTAGCTAGAGGAGCAGGTGTTGTAGTGAAACTGATCGCAGAAGAATGGAAATCAACCATATTAAAATTACCTCGTGGAGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACTGTC

Coding sequence (CDS)

ATGCCCTTAAGCACAACCATACATAACATAGAAATCACACTTGGGAAGGGGCAATTAGCTAGAGGAGCAGGTGTTGTAGTGAAACTGATCGCAGAAGAATGGAAATCAACCATATTAAAATTACCTCGTGGAGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACTGTC

Protein sequence

MPLSTTIHNIEITLGKGQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV

Homology

[Close]

BLAST of MS009568.1 vs. NCBI nr
Match: RZC71849.1 (hypothetical protein C5167_035027 [Papaver somniferum])

HSP 1 Score: 90.5 bits (223), Expect = 5.0e-15
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
          MPL TTIHNIEITLGK GQLAR AGV+ KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 1  MPLGTTIHNIEITLGKGGQLARAAGVIAKLIAKEGKSATLKLPSGEVRLISKNCSATV 58

[Close]

BLAST of MS009568.1 vs. NCBI nr
Match: YP_009771865.1 (ribosomal protein L2 [Baphia racemosa] >YP_009771886.1 ribosomal protein L2 [Baphia racemosa] >QIT02650.1 ribosomal protein L2 [Baphia racemosa] >QIT02671.1 ribosomal protein L2 [Baphia racemosa])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. NCBI nr
Match: AXU40408.1 (ribosomal protein L2 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 191

[Close]

BLAST of MS009568.1 vs. NCBI nr
Match: QNH92113.1 (ribosomal protein L2 [Senna bicapsularis] >QNH92135.1 ribosomal protein L2 [Senna bicapsularis] >QPO05525.1 ribosomal protein L2 [Senna bicapsularis] >QPO05526.1 ribosomal protein L2 [Senna bicapsularis])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 191

[Close]

BLAST of MS009568.1 vs. NCBI nr
Match: YP_009769300.1 (ribosomal protein L2 [Senna bicapsularis] >YP_009769321.1 ribosomal protein L2 [Senna bicapsularis] >QIT00002.1 ribosomal protein L2 [Senna bicapsularis] >QIT00023.1 ribosomal protein L2 [Senna bicapsularis])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. ExPASy Swiss-Prot
Match: Q8S8V3 (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-17
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. ExPASy Swiss-Prot
Match: A0A377 (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-17
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. ExPASy Swiss-Prot
Match: P18663 (50S ribosomal protein L2-A, chloroplastic OS=Glycine max OX=3847 GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-17
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. ExPASy Swiss-Prot
Match: A0A398 (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-17
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 135 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 192

[Close]

BLAST of MS009568.1 vs. ExPASy Swiss-Prot
Match: Q2PMM3 (50S ribosomal protein L2-B, chloroplastic OS=Glycine max OX=3847 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-17
Identity = 47/58 (81.03%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL T IHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. ExPASy TrEMBL
Match: A0A4Y7KIS3 (Ribosomal_L2_C domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_035027 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-15
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
          MPL TTIHNIEITLGK GQLAR AGV+ KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 1  MPLGTTIHNIEITLGKGGQLARAAGVIAKLIAKEGKSATLKLPSGEVRLISKNCSATV 58

[Close]

BLAST of MS009568.1 vs. ExPASy TrEMBL
Match: A0A6H0EKW4 (Ribosomal protein L2 OS=Baphia racemosa OX=143050 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-15
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. ExPASy TrEMBL
Match: A0A7G7YC93 (50S ribosomal protein L2, chloroplastic OS=Senna bicapsularis OX=346951 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-15
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 134 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 191

[Close]

BLAST of MS009568.1 vs. ExPASy TrEMBL
Match: A0A6H0EDN7 (Ribosomal protein L2 OS=Senna bicapsularis OX=346951 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-15
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. ExPASy TrEMBL
Match: A0A7G7YFA3 (50S ribosomal protein L2, chloroplastic OS=Stebbinsia umbrella OX=996393 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-15
Identity = 48/58 (82.76%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL TTIHNIEITLGK GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTTIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-18
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL T IHNIEITLG+ GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

[Close]

BLAST of MS009568.1 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-18
Identity = 46/58 (79.31%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1   MPLSTTIHNIEITLGK-GQLARGAGVVVKLIAEEWKSTILKLPRGEVRLISKNCSATV 58
           MPL T IHNIEITLG+ GQLAR AG V KLIA+E KS  LKLP GEVRLISKNCSATV
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATV 190

The following BLAST results are available for this feature:

BLAST of MS009568.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC71849.1	5.0e-15	82.76	hypothetical protein C5167_035027 [Papaver somniferum]	[more]
YP_009771865.1	1.1e-14	82.76	ribosomal protein L2 [Baphia racemosa] >YP_009771886.1 ribosomal protein L2 [Bap...	[more]
AXU40408.1	1.1e-14	82.76	ribosomal protein L2 [Gomphogyne cissiformis var. villosa]	[more]
QNH92113.1	1.1e-14	82.76	ribosomal protein L2 [Senna bicapsularis] >QNH92135.1 ribosomal protein L2 [Senn...	[more]
YP_009769300.1	1.1e-14	82.76	ribosomal protein L2 [Senna bicapsularis] >YP_009769321.1 ribosomal protein L2 [...	[more]

BLAST of MS009568.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8V3	5.6e-17	81.03	50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl2-...	[more]
A0A377	5.6e-17	81.03	50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-A P...	[more]
P18663	5.6e-17	81.03	50S ribosomal protein L2-A, chloroplastic OS=Glycine max OX=3847 GN=rpl2-A PE=3 ...	[more]
A0A398	5.6e-17	81.03	50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica OX=13443 GN=rpl2-B P...	[more]
Q2PMM3	5.6e-17	81.03	50S ribosomal protein L2-B, chloroplastic OS=Glycine max OX=3847 GN=rpl2-B PE=3 ...	[more]

BLAST of MS009568.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7KIS3	2.4e-15	82.76	Ribosomal_L2_C domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_...	[more]
A0A6H0EKW4	5.4e-15	82.76	Ribosomal protein L2 OS=Baphia racemosa OX=143050 GN=rpl2 PE=3 SV=1	[more]
A0A7G7YC93	5.4e-15	82.76	50S ribosomal protein L2, chloroplastic OS=Senna bicapsularis OX=346951 GN=rpl2 ...	[more]
A0A6H0EDN7	5.4e-15	82.76	Ribosomal protein L2 OS=Senna bicapsularis OX=346951 GN=rpl2 PE=3 SV=1	[more]
A0A7G7YFA3	5.4e-15	82.76	50S ribosomal protein L2, chloroplastic OS=Stebbinsia umbrella OX=996393 GN=rpl2...	[more]

BLAST of MS009568.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	8.8e-18	79.31	ribosomal protein L2	[more]
ATCG01310.1	8.8e-18	79.31	ribosomal protein L2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..57 e-value: 0.0049 score: -37.1
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..57 e-value: 1.4E-12 score: 47.9
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..57 e-value: 1.2E-19 score: 71.9
None	No IPR available	PANTHER	PTHR13691:SF42	SUBFAMILY NOT NAMED	coord: 1..57
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..57
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..57

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009568	MS009568	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009568.1-cds	MS009568.1-cds-scaffold813:2351105..2351155	CDS
MS009568.1-cds	MS009568.1-cds-scaffold813:2351157..2351276	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009568.1	MS009568.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome