MS009347.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009347.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	scaffold813: 496976 .. 497326 (+)
Sequence length	351
RNA-Seq Expression	MS009347.1
Synteny	MS009347.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGACTTCCATTTTGCTTTCAAATTGCTTCTGTTAACCCTCCTGCTAACGTCACCGGCGGTGAGGTTGGTGACAGCAGATGCAGAGAAAGACAAGGAGGAGTGCACGCAGCAATTGGCGGGGATGGCCACGTGTCTGCCGTACGTGAGCGGTGACGCAAAATCTCCCACACCCGACTGTTGCAGTGGGCTGAAGGAAGTTCTGAAGAGCAACAAGAAGTGCTTGTGCGTTATAGTTAAAGACCGAAATGACCCTGATTTGGGGCTTCAGATTAATGTCACGCTCGCCTTGGGCTTGCCTGATTCTTGCCATGCCTCGGCCAATGTCTCCAATTGTCCCGGTAAATTG

mRNA sequence

AAAATGGACTTCCATTTTGCTTTCAAATTGCTTCTGTTAACCCTCCTGCTAACGTCACCGGCGGTGAGGTTGGTGACAGCAGATGCAGAGAAAGACAAGGAGGAGTGCACGCAGCAATTGGCGGGGATGGCCACGTGTCTGCCGTACGTGAGCGGTGACGCAAAATCTCCCACACCCGACTGTTGCAGTGGGCTGAAGGAAGTTCTGAAGAGCAACAAGAAGTGCTTGTGCGTTATAGTTAAAGACCGAAATGACCCTGATTTGGGGCTTCAGATTAATGTCACGCTCGCCTTGGGCTTGCCTGATTCTTGCCATGCCTCGGCCAATGTCTCCAATTGTCCCGGTAAATTG

Coding sequence (CDS)

AAAATGGACTTCCATTTTGCTTTCAAATTGCTTCTGTTAACCCTCCTGCTAACGTCACCGGCGGTGAGGTTGGTGACAGCAGATGCAGAGAAAGACAAGGAGGAGTGCACGCAGCAATTGGCGGGGATGGCCACGTGTCTGCCGTACGTGAGCGGTGACGCAAAATCTCCCACACCCGACTGTTGCAGTGGGCTGAAGGAAGTTCTGAAGAGCAACAAGAAGTGCTTGTGCGTTATAGTTAAAGACCGAAATGACCCTGATTTGGGGCTTCAGATTAATGTCACGCTCGCCTTGGGCTTGCCTGATTCTTGCCATGCCTCGGCCAATGTCTCCAATTGTCCCGGTAAATTG

Protein sequence

KMDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL

Homology

[Close]

BLAST of MS009347.1 vs. NCBI nr
Match: XP_022150545.1 (protein YLS3-like [Momordica charantia])

HSP 1 Score: 231.9 bits (590), Expect = 2.9e-57
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 2   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 61
           MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC
Sbjct: 1   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 60

Query: 62  CSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           C+GLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCP  L
Sbjct: 61  CNGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPALL 116

[Close]

BLAST of MS009347.1 vs. NCBI nr
Match: XP_038899115.1 (non-specific lipid transfer protein GPI-anchored 13 [Benincasa hispida])

HSP 1 Score: 202.2 bits (513), Expect = 2.4e-48
Identity = 97/114 (85.09%), Postives = 102/114 (89.47%), Query Frame = 0


Query: 4   FHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCS 63
           FHF +K LLLTLLLTSP V  V  D EKDKEECTQQLAGMATCLPYVSG AK+PTPDCCS
Sbjct: 4   FHFTWKWLLLTLLLTSPTVSFVGGDDEKDKEECTQQLAGMATCLPYVSGGAKAPTPDCCS 63

Query: 64  GLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           GLKEVLK+NKKCLCVI+KDRNDPDLGLQINVTLALGLPD CHA+ANVSNCP  L
Sbjct: 64  GLKEVLKNNKKCLCVIIKDRNDPDLGLQINVTLALGLPDICHATANVSNCPALL 117

[Close]

BLAST of MS009347.1 vs. NCBI nr
Match: XP_022959693.1 (protein YLS3-like [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 5.4e-48
Identity = 98/116 (84.48%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 2   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 61
           M FHFA K LLL LLL SPAV  +  DAEKD+EECTQQLAGMATCL YVSGDAK+PTPDC
Sbjct: 1   MGFHFACKWLLLALLLASPAVSFIAGDAEKDREECTQQLAGMATCLAYVSGDAKAPTPDC 60

Query: 62  CSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           CSGLK VLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPD CHA ANVSNCP  L
Sbjct: 61  CSGLKGVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDVCHAPANVSNCPALL 116

[Close]

BLAST of MS009347.1 vs. NCBI nr
Match: KAG6593339.1 (Protein YLS3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025687.1 Protein YLS3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-47
Identity = 97/116 (83.62%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 2   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 61
           M FHF  K LLL LLL SPAV  +  DAEKD+EECTQQLAGMATCL YVSGDAK+PTPDC
Sbjct: 1   MGFHFGCKWLLLALLLASPAVSFIAGDAEKDREECTQQLAGMATCLAYVSGDAKAPTPDC 60

Query: 62  CSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           CSGLK VLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPD CHA ANVSNCP  L
Sbjct: 61  CSGLKGVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDVCHAPANVSNCPALL 116

[Close]

BLAST of MS009347.1 vs. NCBI nr
Match: XP_023513729.1 (protein YLS3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-47
Identity = 97/116 (83.62%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 2   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 61
           M FHF  K LLL LLL SPAV  +  DAEKD+EECTQQLAGMATCL YVSGDAK+PTPDC
Sbjct: 1   MGFHFGCKWLLLALLLASPAVSFIAGDAEKDREECTQQLAGMATCLAYVSGDAKAPTPDC 60

Query: 62  CSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           CSGLK VLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPD CHA ANVSNCP  L
Sbjct: 61  CSGLKGVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDVCHAPANVSNCPALL 116

[Close]

BLAST of MS009347.1 vs. ExPASy Swiss-Prot
Match: O64865 (Non-specific lipid transfer protein GPI-anchored 14 OS=Arabidopsis thaliana OX=3702 GN=LTPG14 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 9   KLLLLTLLLTSPAVRLVTA---DAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGL 68
           K+ L+   +    V +V A   D  KDKEECT+QL GMATCLPYV G AKSPTPDCCSGL
Sbjct: 5   KINLMATAIALIVVAMVVAAADDKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGL 64

Query: 69  KEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           K+VL SNKKCLCVI++DRNDPDLGLQINV+LAL LP  CHA+A+V+ CP  L
Sbjct: 65  KQVLNSNKKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAAADVTKCPALL 116

[Close]

BLAST of MS009347.1 vs. ExPASy Swiss-Prot
Match: O64864 (Non-specific lipid transfer protein GPI-anchored 13 OS=Arabidopsis thaliana OX=3702 GN=LTPG13 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-35
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 13  LTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEVLKSN 72
           + L++ +  V    AD  KDKEECT QL GMATCLPYV G AKSPTPDCCSGLK+V+ S+
Sbjct: 13  IALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSD 72

Query: 73  KKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
            KCLC+I+++RNDPDLGLQ+NV+LAL LP  CHA+A+++ CP  L
Sbjct: 73  MKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALL 117

[Close]

BLAST of MS009347.1 vs. ExPASy Swiss-Prot
Match: F4I082 (Non-specific lipid transfer protein GPI-anchored 6 OS=Arabidopsis thaliana OX=3702 GN=LTPG6 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-26
Identity = 49/106 (46.23%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 9   KLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEV 68
           + L +T+++TS  +    +D  +D+EECT QL  ++TC+PYV GDAK+PT DCC+G  +V
Sbjct: 6   RTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQV 65

Query: 69  LKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASA-NVSNC 114
           ++ ++KC+C++V+D++DP LG++IN TLA  LP +CH +A N+++C
Sbjct: 66  IRKSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDC 111

[Close]

BLAST of MS009347.1 vs. ExPASy Swiss-Prot
Match: Q9M2G1 (Non-specific lipid transfer protein GPI-anchored 22 OS=Arabidopsis thaliana OX=3702 GN=LTPG22 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-17
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 12  LLTLLLTSPAVRL-VTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEVLK 71
           +L L +T   + L V ++  +D + C   ++ + +CLP+V+  AK+P   CCS LK  + 
Sbjct: 13  MLALCITVAVMFLGVRSELSQDIKGCQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKID 72

Query: 72  --SNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
               +KCLC +VKDR+DP LG +++   A+ LP +CH  AN+S CP  L
Sbjct: 73  KGQTRKCLCTLVKDRDDPGLGFKVDANRAMSLPSACHVPANISQCPDLL 121

[Close]

BLAST of MS009347.1 vs. ExPASy Swiss-Prot
Match: Q9LJ86 (Non-specific lipid transfer protein GPI-anchored 5 OS=Arabidopsis thaliana OX=3702 GN=LTPG5 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 10  LLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEVL 69
           L+ LT+ +   +  +V+A     +  CT  L  M+ CL Y++G++ SP   CC+ L  V+
Sbjct: 7   LVFLTVFMAVMSSTMVSA-----QSSCTNALISMSPCLNYITGNSTSPNQQCCNQLSRVV 66

Query: 70  KSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHA-SANVSNC 114
           +S+  CLC ++ +     LG+ +N T ALGLP +C+  +  VS C
Sbjct: 67  QSSPDCLCQVL-NGGGSQLGINVNQTQALGLPRACNVQTPPVSRC 105

[Close]

BLAST of MS009347.1 vs. ExPASy TrEMBL
Match: A0A6J1D8S3 (protein YLS3-like OS=Momordica charantia OX=3673 GN=LOC111018659 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.4e-57
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 2   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 61
           MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC
Sbjct: 1   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 60

Query: 62  CSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           C+GLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCP  L
Sbjct: 61  CNGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPALL 116

[Close]

BLAST of MS009347.1 vs. ExPASy TrEMBL
Match: A0A6J1H6P3 (protein YLS3-like OS=Cucurbita moschata OX=3662 GN=LOC111460690 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 98/116 (84.48%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 2   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 61
           M FHFA K LLL LLL SPAV  +  DAEKD+EECTQQLAGMATCL YVSGDAK+PTPDC
Sbjct: 1   MGFHFACKWLLLALLLASPAVSFIAGDAEKDREECTQQLAGMATCLAYVSGDAKAPTPDC 60

Query: 62  CSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           CSGLK VLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPD CHA ANVSNCP  L
Sbjct: 61  CSGLKGVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDVCHAPANVSNCPALL 116

[Close]

BLAST of MS009347.1 vs. ExPASy TrEMBL
Match: A0A6J1KZ76 (protein YLS3-like OS=Cucurbita maxima OX=3661 GN=LOC111497688 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.0e-47
Identity = 97/116 (83.62%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 2   MDFHFAFKLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDC 61
           M FHF  K LLLTLLL SPAV  +  DAEKD+EECTQQLAGMATCL YVSGDAK+PTPDC
Sbjct: 1   MGFHFGCKWLLLTLLLASPAVSFIAGDAEKDREECTQQLAGMATCLAYVSGDAKAPTPDC 60

Query: 62  CSGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           CSGLK VLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPD CHA ANVS CP  L
Sbjct: 61  CSGLKGVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDVCHAPANVSTCPALL 116

[Close]

BLAST of MS009347.1 vs. ExPASy TrEMBL
Match: A0A1S3CDS0 (protein YLS3-like OS=Cucumis melo OX=3656 GN=LOC103499877 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.1e-45
Identity = 94/115 (81.74%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 4   FHFAFKLLLLTLLLTSP-AVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCC 63
           F   FK  LL LLL SP +VR V  D +KDKEECT QLAGMATCLPYVSGDAK+PTPDCC
Sbjct: 4   FRLCFKWFLLMLLLRSPSSVRFVGGDDKKDKEECTPQLAGMATCLPYVSGDAKTPTPDCC 63

Query: 64  SGLKEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           SGLKEVLK+NKKCLCVIVKDRNDPDLGLQINVTLALGLPD CHA+ANVSNCP  L
Sbjct: 64  SGLKEVLKNNKKCLCVIVKDRNDPDLGLQINVTLALGLPDICHATANVSNCPALL 118

[Close]

BLAST of MS009347.1 vs. ExPASy TrEMBL
Match: A0A5D3CGX6 (Major facilitator superfamily domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001270 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.3e-44
Identity = 93/111 (83.78%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 8   FKLLLLTLLLTSP-AVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLK 67
           F L+LL LLL SP +VR V  D +KDKEECT QLAGMATCLPYVSGDAK+PTPDCCSGLK
Sbjct: 11  FLLMLLLLLLRSPSSVRFVGGDDKKDKEECTPQLAGMATCLPYVSGDAKTPTPDCCSGLK 70

Query: 68  EVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           EVLK+NKKCLCVIVKDRNDPDLGLQINVTLALGLPD CHA+ANVSNCP  L
Sbjct: 71  EVLKNNKKCLCVIVKDRNDPDLGLQINVTLALGLPDICHATANVSNCPALL 121

[Close]

BLAST of MS009347.1 vs. TAIR 10
Match: AT2G44300.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-38
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 9   KLLLLTLLLTSPAVRLVTA---DAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGL 68
           K+ L+   +    V +V A   D  KDKEECT+QL GMATCLPYV G AKSPTPDCCSGL
Sbjct: 5   KINLMATAIALIVVAMVVAAADDKTKDKEECTEQLVGMATCLPYVQGQAKSPTPDCCSGL 64

Query: 69  KEVLKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
           K+VL SNKKCLCVI++DRNDPDLGLQINV+LAL LP  CHA+A+V+ CP  L
Sbjct: 65  KQVLNSNKKCLCVIIQDRNDPDLGLQINVSLALALPSVCHAAADVTKCPALL 116

[Close]

BLAST of MS009347.1 vs. TAIR 10
Match: AT2G44290.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-36
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 13  LTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEVLKSN 72
           + L++ +  V    AD  KDKEECT QL GMATCLPYV G AKSPTPDCCSGLK+V+ S+
Sbjct: 13  IALIMVAMVVDAAGADKGKDKEECTAQLVGMATCLPYVQGKAKSPTPDCCSGLKQVINSD 72

Query: 73  KKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
            KCLC+I+++RNDPDLGLQ+NV+LAL LP  CHA+A+++ CP  L
Sbjct: 73  MKCLCMIIQERNDPDLGLQVNVSLALALPSVCHATADITKCPALL 117

[Close]

BLAST of MS009347.1 vs. TAIR 10
Match: AT1G55260.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 8.7e-28
Identity = 49/106 (46.23%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 9   KLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEV 68
           + L +T+++TS  +    +D  +D+EECT QL  ++TC+PYV GDAK+PT DCC+G  +V
Sbjct: 49  RTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQV 108

Query: 69  LKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASA-NVSNC 114
           ++ ++KC+C++V+D++DP LG++IN TLA  LP +CH +A N+++C
Sbjct: 109 IRKSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDC 154

[Close]

BLAST of MS009347.1 vs. TAIR 10
Match: AT1G55260.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 8.7e-28
Identity = 49/106 (46.23%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 9   KLLLLTLLLTSPAVRLVTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEV 68
           + L +T+++TS  +    +D  +D+EECT QL  ++TC+PYV GDAK+PT DCC+G  +V
Sbjct: 49  RTLFITIVITSMLLGFGNSDLAQDREECTNQLIELSTCIPYVGGDAKAPTKDCCAGFGQV 108

Query: 69  LKSNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASA-NVSNC 114
           ++ ++KC+C++V+D++DP LG++IN TLA  LP +CH +A N+++C
Sbjct: 109 IRKSEKCVCILVRDKDDPQLGIKINATLAAHLPSACHITAPNITDC 154

[Close]

BLAST of MS009347.1 vs. TAIR 10
Match: AT3G58550.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-18
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 12  LLTLLLTSPAVRL-VTADAEKDKEECTQQLAGMATCLPYVSGDAKSPTPDCCSGLKEVLK 71
           +L L +T   + L V ++  +D + C   ++ + +CLP+V+  AK+P   CCS LK  + 
Sbjct: 13  MLALCITVAVMFLGVRSELSQDIKGCQDAMSDLYSCLPFVTNKAKAPDSTCCSTLKVKID 72

Query: 72  --SNKKCLCVIVKDRNDPDLGLQINVTLALGLPDSCHASANVSNCPGKL 118
               +KCLC +VKDR+DP LG +++   A+ LP +CH  AN+S CP  L
Sbjct: 73  KGQTRKCLCTLVKDRDDPGLGFKVDANRAMSLPSACHVPANISQCPDLL 121

The following BLAST results are available for this feature:

BLAST of MS009347.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150545.1	2.9e-57	97.41	protein YLS3-like [Momordica charantia]	[more]
XP_038899115.1	2.4e-48	85.09	non-specific lipid transfer protein GPI-anchored 13 [Benincasa hispida]	[more]
XP_022959693.1	5.4e-48	84.48	protein YLS3-like [Cucurbita moschata]	[more]
KAG6593339.1	1.6e-47	83.62	Protein YLS3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025687.1 Prot...	[more]
XP_023513729.1	1.6e-47	83.62	protein YLS3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS009347.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64865	2.6e-37	66.96	Non-specific lipid transfer protein GPI-anchored 14 OS=Arabidopsis thaliana OX=3...	[more]
O64864	1.9e-35	62.86	Non-specific lipid transfer protein GPI-anchored 13 OS=Arabidopsis thaliana OX=3...	[more]
F4I082	1.2e-26	46.23	Non-specific lipid transfer protein GPI-anchored 6 OS=Arabidopsis thaliana OX=37...	[more]
Q9M2G1	3.9e-17	38.53	Non-specific lipid transfer protein GPI-anchored 22 OS=Arabidopsis thaliana OX=3...	[more]
Q9LJ86	3.6e-10	34.29	Non-specific lipid transfer protein GPI-anchored 5 OS=Arabidopsis thaliana OX=37...	[more]

BLAST of MS009347.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8S3	1.4e-57	97.41	protein YLS3-like OS=Momordica charantia OX=3673 GN=LOC111018659 PE=3 SV=1	[more]
A0A6J1H6P3	2.6e-48	84.48	protein YLS3-like OS=Cucurbita moschata OX=3662 GN=LOC111460690 PE=3 SV=1	[more]
A0A6J1KZ76	1.0e-47	83.62	protein YLS3-like OS=Cucurbita maxima OX=3661 GN=LOC111497688 PE=3 SV=1	[more]
A0A1S3CDS0	6.1e-45	81.74	protein YLS3-like OS=Cucumis melo OX=3656 GN=LOC103499877 PE=4 SV=1	[more]
A0A5D3CGX6	2.3e-44	83.78	Major facilitator superfamily domain-containing protein 12 OS=Cucumis melo var. ...	[more]

BLAST of MS009347.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44300.1	1.9e-38	66.96	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G44290.1	1.3e-36	62.86	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G55260.1	8.7e-28	46.23	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT1G55260.2	8.7e-28	46.23	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G58550.1	2.8e-18	38.53	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 56..70 score: 31.38 coord: 91..108 score: 30.68 coord: 35..51 score: 29.05
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 36..113 e-value: 1.7E-5 score: 34.3
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 21..113 e-value: 7.8E-15 score: 54.8
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 33..113 e-value: 3.9E-15 score: 57.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 35..114
IPR043325	Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein	PANTHER	PTHR33044	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 14..114
None	No IPR available	PANTHER	PTHR33044:SF94	PROTEIN YLS3	coord: 14..114
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 43..105 e-value: 1.94026E-16 score: 65.911

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009347	MS009347	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009347.1-cds	MS009347.1-cds-scaffold813:496976..497326	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009347.1	MS009347.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding