MS009042.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009042.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-dependent RNA polymerase
Location	scaffold385: 425286 .. 430376 (+)
Sequence length	3309
RNA-Seq Expression	MS009042.1
Synteny	MS009042.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGACGATCGAGATTTACGGATTCCGGCGGGACGTCACCGAGGAGGAAGTGAAGGAATTCCTGGAGAATCACACGGGAGACGGAACCGTATCGGAGGTGAGGATCGCGGAATCCAGAGACGAAAATTCCCGGTTCAAATTCGCGACGGTCCGGTTCACGAGCGAGTTGGCGGCCGGGCACGTGGTGTCTCTGGCGGCTGCGGAGGAGCGGCTCTGGTACGGCAGCTCGTACCTGAAGGCCAGGGAAGCGGATCGGCAGAACAGGCGCGGCGGCGTGGGCGTGGAGAGAATGGAGAATTTGACGCTTCACTTGGGGAGCCAGATTTCGAAGGAGAAATTGAGCGTGATTTGGAAAGGGGAAAATTGTAGCGTGGAATTTGGGAGTGGAGTGAGGAAATTGTTTGTGTACGTGAATTTGGAGTACAAGATGGAGGTGTGGTTCGAGAGTATTTTGAGAGTTCAGCTTCGTTGCCCACCCGACGGAGCTTCCAAGTTTCTTCTCATTCAGGTTCGTTCTTTATTTATGATTATGATTCTACACTTTTTCAAGCAAAACTTGACTTTTTAGTCTTTGTTTTTTGTTCTTTTACTTGCTTACCATTGATTAACAAGAAGCTCAAATAATGATATAAATACTTGATTTGATATACTGGATATCATATATGATTGATATATCTATAGTGTAAAATTGGAACAACTAAAAATCATTTTTCCATATTTGCAAAAGTTATTGTTATATTTATAAATATAGCAAATATTTTACCCATTAGTTATATATTTTCTATAATTTAAGATAAACTAAACATAGATAAAGCGAACATATCTCAACGGTAATTGACTGACCAGACATAGGTACCTTAACCTTGAGCTATGCTCACATTGACTTTAATAATTAATAATTAGATGTTACTATTTTAAAAAATTTGTAAACTTCTTTTAGAAAATGCTTCCTTTAAAAATTTAGCTAGAATAAAAAGAATATTTTGTATGAAGTATATTAAAAATAATAAACTGCAATCAATTTTTTTTTAGGCAATAAATTGCAACCAATTAAGGGTAAAGACTAAGCATTTACATCAATTTTTTAAAAAAATTATTTAACAAAAACCAATTATAAATACATTTGTGCTCATATTCACATCTTTTACATTAAATAGCTGATACTTAATAGATGATATGTTGAATCTTAAGATTAAAATTATATTTAGATTTAGGTTAAACTACGAATTTTGTTCCTAAACTGGCATTTGATTTACTTCTAAGTTTAATTTTAAATTTAATTTTGTGATTTTAGCCTAAAATGGACACTTTTTTCTTTTATATTTATATCGATTTGGTTCGAATTGTTTGTTCGTTCGGCAGTTGCAGGGCGCTCCACGGATTTTCAAGAAAAGATCGTCTTCTTCTTCTTCATCTTCATCTTCATCTTCTTCTCGATTCTATTTCAAGGAATCTCAATCTAGTGGTTCCCGTTGGATTAGGGATGTCGATTTCACTCCATCTTCTTGCATTGGACAATCATTTGCTCTGTGCTTGGAGCTTTCTCCCGGAGATCAGCTTCCTTCTTTCTTCAAAACATTGGTTGGATACGAAGAAATTTATGGCCCCTTCAATTTGGAGACAGGTTCTTCTTTCTCTTCCACTTCAAATCTGGTTCCTATTGTTACTCCACCCCAAGGCTTTGATTTGTCTTATAAGATTTTGTTCAAAATCAATGCGCTGGTTCAACACGGTTATCTTCCTGGACCATTACTGGACGATGAATTCTTCCGACTGGTCGATCCCAGTCGGTTTCGTCCTGAATACATCGAACGTGCCCTAGAAAAACTATTTAATTTGAAGGAATGTTTCTACGAACCCCAAAATTGGCTCAAGCAGCAATATCGGTCATACTACAACTCTAAGCAGCTTCCATGGAAGCCTGATATCTCTTTGGATGATGGCCTGGTCTATGTGCACAGGGTTCAAATCACACCTTCTAAGGTCTACTTCCGTGGTCCGGAGGCGAATCTTTCCAACCGGGTAGTACGTCAGTACTCTGATGATATTGATAATTTTATTAGGGTATCTTTTGTTGATGAGGAGTTGGATAAAATCCGTCCCATAGATCTGTCGCCGCGTACATCTACTGCAAATGGTGAAAGAACTAGAGTTTATGATAGAATATTATCTACTTTAAGGAATGGTATCGTCATTGGTGACAAGAAGTTCGAGTTTCTTGCTTTCTCGGCAAGTCAACTACGGGAAAATTCTGTTTGGATGTTTGCTTCGAGGGAGGGGCTTAGTGCAGCAGATATTAGAGAGTGGATGGGTGATTTTCGTCAGATAAGAAATGTGGCCAAATATGCTGCTCGACTTGGACAATCTTTTGGCTCATCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAAGTCATTACTGATGTAGAAGTTGAAACAAATAACGTCACATATTGTTTCTCTGACGGGATAGGAAAAATATCTGAAACATTGGCTGAGAAGGTTGCTGAAAGATGTGGCTTGATCAATCATACACCATCTGCCTTCCAGATCCGATATGCTGGATACAAAGGCGTTGTTGCTATTGATCCAAAATCGGAAAAGAAATTGTCACTAAGAAAGAGTATGTTGAAGTATAAGTCACTTGACACCCAACTAGATGTTTTGGCATGGAGCAAGTATCTGCCCTGTTTTCTTAATCGTCAGGTGATCAACCTTTTGTCCACCCTCGGAATTAAGGACCGTGTTTTTGAGAAGAAACAAAAGGAGGCTATATATCAACTGGATTGTATTTTAAAAGACCCATCAAGGGCATTAGAGGTTTTGGAGTTGATGTCCCCAGGGGAGATGACCAGCGTTCTGAAGGAAATGCTTTTGTATTACAAACCAAACAAAGAGCCTTTTCTTAATATGATGCTACGAACATTTCGGGCAGATAAATTGTTAGACTTGAGGACCAAATCAAGGATATTTGTTCCCAAGGGAAGGACCATGATGGGCTGCCTAGATGAAACCGGGACTCTAAAATATGGTCAGGTGTTTGTGCAATGCTCTGTCCCTGGTAGATCAAGTGAAAGCAATTTCATTGCTGAGGGAAAAGTAGTCGTCGCTAAAAACCCCTGTTTACACCCAGGGGACATGCGTGTACTCAATGCTGTTGATGTGAAAGCTTTGCATCATATGGTGGATTGTGTTGTTTTTCCGCAGAAAGGACAGAGGTAAGCAAGCTTATTGTGTATATGCAGTTGTTCATGTATTCAACACATTTTGCATGTCCATATGTATTGAAAAACTACTTTGGAAATCTTTTACAAAATCATAAGAAATATTCTCACTATGGTTTTGTAGCTTTGGTTTAGTAGCTATGCTGATTAATTATTAGAAGTTTATTTTTGGATAGCAATTTTTTATGACTTTTTGCAGTCCTTACCTAATATTTCCTATATGTCATGTTAGACCTCATCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGATTTGTACTTTGTTTGCTGGGATCCGGAGCTGACTTGTATTCGACCCGTTAAACCTATGAGCTACAAGCCTGCACCAACTATCCAGTTGGATCATGATGTCACAATTGAGGTATGGTTTTTGGAAGTATTTACTTCTATTGCAAACACATTATCACGTGTTTGTTCTCTGTCTTTTGGTTCACTTAAAGACACTTGTTCTTTGTTGCTAGAATTCATGCTACATGCATTATCTCATATCTCCTATGAAATGAAATTGTTTCTTATCAGGAAAAATAAAAAGTCATGTTACGTCCATAACTGCATATTAAGAATACTTTTCTTTGCTCCATGCGTGGCATGTGGTCTAAACATGATTATCTTTCCATGTAGTTTTTCCTGGTTCAAATGCAATTTGTTTGTCTCGCTCTATGTACTGAGCTTTATGTGAAAGTAATTGTGTTTTTTGCCACGAGGTGGGGTGGGAGAAAGGAAAGTTTGACATTTTTTCTAGATATTGGCTCAAATATGCCTGTATATTAGTAGATATTATACTTTCATATGTATTTGGCTCATGATCCTCTCAATTGCAATTTTTTTTTTTTAAAAAGAACATATTTCTTTTTAATACCCAACTCCACGTGGAGAACGTTTGCCTCATAGTCAGGATTAGTGGCAAAGTTTCAGTGGTATTCTTCAGAAGTATCATTTAAAATATTTTGTGAGTCTATAAATGATGTTATTATTTTATATAAATAAGATATATTGTACCAGATTTTAAAGTTGATAACAGTTTGAATTATATACTATCATTTTGATACAGGAAGTGCAAGAATATATGGCCAACTACATGGTCAATGACGGTCTTGGAGCCATTGCAAATGCACACACTGCCTTTGCAGATAGGGAACCTAGGAAGGCAATGAGTGCTAAATGTATCAAACTCGCAAAACTGTTCTCAATTGCCGTTGACTTCCCGAAGACTGGTGTACCAGCAAACTTACCACCCTTTCTTCGTGTCCACGAGTTTCCAGATTTCATGGAGAAGCTCGATAGACCCGCCTACGAATCAAAGGGTGTCATCGGGAAGCTTTTTCGCAGTGTGAAAGATGTTTCTTTCAACACCAACACCATTGAAACCTACACTAGGGAAGTTGCTGCTAAATGCTATGATCCAGACATGGAAATAGATGGGTTTGAAAAGTATTTGAATGAAGCTTTTGATTTCAAAACCAGATATGATTACAAGTTGGGGAACCTGATGGATTATTATGGTATTAGGACTGAACCAGAATTAGTCAGCGGAAATATCTTAAGAGTGGGAAAGTCTTTCGATAAAAGGACCGACATGGAACAAATTAGCCATGCCATGAGGTCACTTAGAAAGGAAGCCAGGGCTTGGTTCAACGAGAAGGGAAGCAAGCCTAGATGTGACGATGATGACAACGGGGACGAGGAGGAGGAATTCGCAAAAGCATCAGCGTGGTATCATGTCACATATCATCAAAGCTATTGGGGTCGCTATAACGAAGGCATGGAAAGAGATCACTTTCTGAGTTTCCCATGGTGTGTTTCTGATAAGCTAATTCAGATTAAAAAGAAGAAGATT

mRNA sequence

ATGGGGAAGACGATCGAGATTTACGGATTCCGGCGGGACGTCACCGAGGAGGAAGTGAAGGAATTCCTGGAGAATCACACGGGAGACGGAACCGTATCGGAGGTGAGGATCGCGGAATCCAGAGACGAAAATTCCCGGTTCAAATTCGCGACGGTCCGGTTCACGAGCGAGTTGGCGGCCGGGCACGTGGTGTCTCTGGCGGCTGCGGAGGAGCGGCTCTGGTACGGCAGCTCGTACCTGAAGGCCAGGGAAGCGGATCGGCAGAACAGGCGCGGCGGCGTGGGCGTGGAGAGAATGGAGAATTTGACGCTTCACTTGGGGAGCCAGATTTCGAAGGAGAAATTGAGCGTGATTTGGAAAGGGGAAAATTGTAGCGTGGAATTTGGGAGTGGAGTGAGGAAATTGTTTGTGTACGTGAATTTGGAGTACAAGATGGAGGTGTGGTTCGAGAGTATTTTGAGAGTTCAGCTTCGTTGCCCACCCGACGGAGCTTCCAAGTTTCTTCTCATTCAGTTGCAGGGCGCTCCACGGATTTTCAAGAAAAGATCGTCTTCTTCTTCTTCATCTTCATCTTCATCTTCTTCTCGATTCTATTTCAAGGAATCTCAATCTAGTGGTTCCCGTTGGATTAGGGATGTCGATTTCACTCCATCTTCTTGCATTGGACAATCATTTGCTCTGTGCTTGGAGCTTTCTCCCGGAGATCAGCTTCCTTCTTTCTTCAAAACATTGGTTGGATACGAAGAAATTTATGGCCCCTTCAATTTGGAGACAGGTTCTTCTTTCTCTTCCACTTCAAATCTGGTTCCTATTGTTACTCCACCCCAAGGCTTTGATTTGTCTTATAAGATTTTGTTCAAAATCAATGCGCTGGTTCAACACGGTTATCTTCCTGGACCATTACTGGACGATGAATTCTTCCGACTGGTCGATCCCAGTCGGTTTCGTCCTGAATACATCGAACGTGCCCTAGAAAAACTATTTAATTTGAAGGAATGTTTCTACGAACCCCAAAATTGGCTCAAGCAGCAATATCGGTCATACTACAACTCTAAGCAGCTTCCATGGAAGCCTGATATCTCTTTGGATGATGGCCTGGTCTATGTGCACAGGGTTCAAATCACACCTTCTAAGGTCTACTTCCGTGGTCCGGAGGCGAATCTTTCCAACCGGGTAGTACGTCAGTACTCTGATGATATTGATAATTTTATTAGGGTATCTTTTGTTGATGAGGAGTTGGATAAAATCCGTCCCATAGATCTGTCGCCGCGTACATCTACTGCAAATGGTGAAAGAACTAGAGTTTATGATAGAATATTATCTACTTTAAGGAATGGTATCGTCATTGGTGACAAGAAGTTCGAGTTTCTTGCTTTCTCGGCAAGTCAACTACGGGAAAATTCTGTTTGGATGTTTGCTTCGAGGGAGGGGCTTAGTGCAGCAGATATTAGAGAGTGGATGGGTGATTTTCGTCAGATAAGAAATGTGGCCAAATATGCTGCTCGACTTGGACAATCTTTTGGCTCATCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAAGTCATTACTGATGTAGAAGTTGAAACAAATAACGTCACATATTGTTTCTCTGACGGGATAGGAAAAATATCTGAAACATTGGCTGAGAAGGTTGCTGAAAGATGTGGCTTGATCAATCATACACCATCTGCCTTCCAGATCCGATATGCTGGATACAAAGGCGTTGTTGCTATTGATCCAAAATCGGAAAAGAAATTGTCACTAAGAAAGAGTATGTTGAAGTATAAGTCACTTGACACCCAACTAGATGTTTTGGCATGGAGCAAGTATCTGCCCTGTTTTCTTAATCGTCAGGTGATCAACCTTTTGTCCACCCTCGGAATTAAGGACCGTGTTTTTGAGAAGAAACAAAAGGAGGCTATATATCAACTGGATTGTATTTTAAAAGACCCATCAAGGGCATTAGAGGTTTTGGAGTTGATGTCCCCAGGGGAGATGACCAGCGTTCTGAAGGAAATGCTTTTGTATTACAAACCAAACAAAGAGCCTTTTCTTAATATGATGCTACGAACATTTCGGGCAGATAAATTGTTAGACTTGAGGACCAAATCAAGGATATTTGTTCCCAAGGGAAGGACCATGATGGGCTGCCTAGATGAAACCGGGACTCTAAAATATGGTCAGGTGTTTGTGCAATGCTCTGTCCCTGGTAGATCAAGTGAAAGCAATTTCATTGCTGAGGGAAAAGTAGTCGTCGCTAAAAACCCCTGTTTACACCCAGGGGACATGCGTGTACTCAATGCTGTTGATGTGAAAGCTTTGCATCATATGGTGGATTGTGTTGTTTTTCCGCAGAAAGGACAGAGACCTCATCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGATTTGTACTTTGTTTGCTGGGATCCGGAGCTGACTTGTATTCGACCCGTTAAACCTATGAGCTACAAGCCTGCACCAACTATCCAGTTGGATCATGATGTCACAATTGAGGAAGTGCAAGAATATATGGCCAACTACATGGTCAATGACGGTCTTGGAGCCATTGCAAATGCACACACTGCCTTTGCAGATAGGGAACCTAGGAAGGCAATGAGTGCTAAATGTATCAAACTCGCAAAACTGTTCTCAATTGCCGTTGACTTCCCGAAGACTGGTGTACCAGCAAACTTACCACCCTTTCTTCGTGTCCACGAGTTTCCAGATTTCATGGAGAAGCTCGATAGACCCGCCTACGAATCAAAGGGTGTCATCGGGAAGCTTTTTCGCAGTGTGAAAGATGTTTCTTTCAACACCAACACCATTGAAACCTACACTAGGGAAGTTGCTGCTAAATGCTATGATCCAGACATGGAAATAGATGGGTTTGAAAAGTATTTGAATGAAGCTTTTGATTTCAAAACCAGATATGATTACAAGTTGGGGAACCTGATGGATTATTATGGTATTAGGACTGAACCAGAATTAGTCAGCGGAAATATCTTAAGAGTGGGAAAGTCTTTCGATAAAAGGACCGACATGGAACAAATTAGCCATGCCATGAGGTCACTTAGAAAGGAAGCCAGGGCTTGGTTCAACGAGAAGGGAAGCAAGCCTAGATGTGACGATGATGACAACGGGGACGAGGAGGAGGAATTCGCAAAAGCATCAGCGTGGTATCATGTCACATATCATCAAAGCTATTGGGGTCGCTATAACGAAGGCATGGAAAGAGATCACTTTCTGAGTTTCCCATGGTGTGTTTCTGATAAGCTAATTCAGATTAAAAAGAAGAAGATT

Coding sequence (CDS)

ATGGGGAAGACGATCGAGATTTACGGATTCCGGCGGGACGTCACCGAGGAGGAAGTGAAGGAATTCCTGGAGAATCACACGGGAGACGGAACCGTATCGGAGGTGAGGATCGCGGAATCCAGAGACGAAAATTCCCGGTTCAAATTCGCGACGGTCCGGTTCACGAGCGAGTTGGCGGCCGGGCACGTGGTGTCTCTGGCGGCTGCGGAGGAGCGGCTCTGGTACGGCAGCTCGTACCTGAAGGCCAGGGAAGCGGATCGGCAGAACAGGCGCGGCGGCGTGGGCGTGGAGAGAATGGAGAATTTGACGCTTCACTTGGGGAGCCAGATTTCGAAGGAGAAATTGAGCGTGATTTGGAAAGGGGAAAATTGTAGCGTGGAATTTGGGAGTGGAGTGAGGAAATTGTTTGTGTACGTGAATTTGGAGTACAAGATGGAGGTGTGGTTCGAGAGTATTTTGAGAGTTCAGCTTCGTTGCCCACCCGACGGAGCTTCCAAGTTTCTTCTCATTCAGTTGCAGGGCGCTCCACGGATTTTCAAGAAAAGATCGTCTTCTTCTTCTTCATCTTCATCTTCATCTTCTTCTCGATTCTATTTCAAGGAATCTCAATCTAGTGGTTCCCGTTGGATTAGGGATGTCGATTTCACTCCATCTTCTTGCATTGGACAATCATTTGCTCTGTGCTTGGAGCTTTCTCCCGGAGATCAGCTTCCTTCTTTCTTCAAAACATTGGTTGGATACGAAGAAATTTATGGCCCCTTCAATTTGGAGACAGGTTCTTCTTTCTCTTCCACTTCAAATCTGGTTCCTATTGTTACTCCACCCCAAGGCTTTGATTTGTCTTATAAGATTTTGTTCAAAATCAATGCGCTGGTTCAACACGGTTATCTTCCTGGACCATTACTGGACGATGAATTCTTCCGACTGGTCGATCCCAGTCGGTTTCGTCCTGAATACATCGAACGTGCCCTAGAAAAACTATTTAATTTGAAGGAATGTTTCTACGAACCCCAAAATTGGCTCAAGCAGCAATATCGGTCATACTACAACTCTAAGCAGCTTCCATGGAAGCCTGATATCTCTTTGGATGATGGCCTGGTCTATGTGCACAGGGTTCAAATCACACCTTCTAAGGTCTACTTCCGTGGTCCGGAGGCGAATCTTTCCAACCGGGTAGTACGTCAGTACTCTGATGATATTGATAATTTTATTAGGGTATCTTTTGTTGATGAGGAGTTGGATAAAATCCGTCCCATAGATCTGTCGCCGCGTACATCTACTGCAAATGGTGAAAGAACTAGAGTTTATGATAGAATATTATCTACTTTAAGGAATGGTATCGTCATTGGTGACAAGAAGTTCGAGTTTCTTGCTTTCTCGGCAAGTCAACTACGGGAAAATTCTGTTTGGATGTTTGCTTCGAGGGAGGGGCTTAGTGCAGCAGATATTAGAGAGTGGATGGGTGATTTTCGTCAGATAAGAAATGTGGCCAAATATGCTGCTCGACTTGGACAATCTTTTGGCTCATCTAGAAAAACTTTGTGTGTTGAAGAACATGAAATTGAAGTCATTACTGATGTAGAAGTTGAAACAAATAACGTCACATATTGTTTCTCTGACGGGATAGGAAAAATATCTGAAACATTGGCTGAGAAGGTTGCTGAAAGATGTGGCTTGATCAATCATACACCATCTGCCTTCCAGATCCGATATGCTGGATACAAAGGCGTTGTTGCTATTGATCCAAAATCGGAAAAGAAATTGTCACTAAGAAAGAGTATGTTGAAGTATAAGTCACTTGACACCCAACTAGATGTTTTGGCATGGAGCAAGTATCTGCCCTGTTTTCTTAATCGTCAGGTGATCAACCTTTTGTCCACCCTCGGAATTAAGGACCGTGTTTTTGAGAAGAAACAAAAGGAGGCTATATATCAACTGGATTGTATTTTAAAAGACCCATCAAGGGCATTAGAGGTTTTGGAGTTGATGTCCCCAGGGGAGATGACCAGCGTTCTGAAGGAAATGCTTTTGTATTACAAACCAAACAAAGAGCCTTTTCTTAATATGATGCTACGAACATTTCGGGCAGATAAATTGTTAGACTTGAGGACCAAATCAAGGATATTTGTTCCCAAGGGAAGGACCATGATGGGCTGCCTAGATGAAACCGGGACTCTAAAATATGGTCAGGTGTTTGTGCAATGCTCTGTCCCTGGTAGATCAAGTGAAAGCAATTTCATTGCTGAGGGAAAAGTAGTCGTCGCTAAAAACCCCTGTTTACACCCAGGGGACATGCGTGTACTCAATGCTGTTGATGTGAAAGCTTTGCATCATATGGTGGATTGTGTTGTTTTTCCGCAGAAAGGACAGAGACCTCATCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGATTTGTACTTTGTTTGCTGGGATCCGGAGCTGACTTGTATTCGACCCGTTAAACCTATGAGCTACAAGCCTGCACCAACTATCCAGTTGGATCATGATGTCACAATTGAGGAAGTGCAAGAATATATGGCCAACTACATGGTCAATGACGGTCTTGGAGCCATTGCAAATGCACACACTGCCTTTGCAGATAGGGAACCTAGGAAGGCAATGAGTGCTAAATGTATCAAACTCGCAAAACTGTTCTCAATTGCCGTTGACTTCCCGAAGACTGGTGTACCAGCAAACTTACCACCCTTTCTTCGTGTCCACGAGTTTCCAGATTTCATGGAGAAGCTCGATAGACCCGCCTACGAATCAAAGGGTGTCATCGGGAAGCTTTTTCGCAGTGTGAAAGATGTTTCTTTCAACACCAACACCATTGAAACCTACACTAGGGAAGTTGCTGCTAAATGCTATGATCCAGACATGGAAATAGATGGGTTTGAAAAGTATTTGAATGAAGCTTTTGATTTCAAAACCAGATATGATTACAAGTTGGGGAACCTGATGGATTATTATGGTATTAGGACTGAACCAGAATTAGTCAGCGGAAATATCTTAAGAGTGGGAAAGTCTTTCGATAAAAGGACCGACATGGAACAAATTAGCCATGCCATGAGGTCACTTAGAAAGGAAGCCAGGGCTTGGTTCAACGAGAAGGGAAGCAAGCCTAGATGTGACGATGATGACAACGGGGACGAGGAGGAGGAATTCGCAAAAGCATCAGCGTGGTATCATGTCACATATCATCAAAGCTATTGGGGTCGCTATAACGAAGGCATGGAAAGAGATCACTTTCTGAGTTTCCCATGGTGTGTTTCTGATAAGCTAATTCAGATTAAAAAGAAGAAGATT

Protein sequence

MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAAGHVVSLAAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWKGENCSVEFGSGVRKLFVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAPRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQHGYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQLPWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSMLKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGRYNEGMERDHFLSFPWCVSDKLIQIKKKKI

Homology

[Close]

BLAST of MS009042.1 vs. NCBI nr
Match: XP_022146462.1 (probable RNA-dependent RNA polymerase 1 [Momordica charantia])

HSP 1 Score: 2187.5 bits (5667), Expect = 0.0e+00
Identity = 1083/1103 (98.19%), Postives = 1088/1103 (98.64%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTIEIYGFRRDVT EEVKEFLENHTGDGTVS VRIAE RDENSRF FATV+F+SELAA
Sbjct: 1    MGKTIEIYGFRRDVTAEEVKEFLENHTGDGTVSAVRIAEFRDENSRFTFATVQFSSELAA 60

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWK 120
            GHVVS AAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWK
Sbjct: 61   GHVVSQAAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWK 120

Query: 121  GENCSVEFGSGVRKLFVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAPRIFK 180
            GENCSVEFGSGVRKLFVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQ APRIFK
Sbjct: 121  GENCSVEFGSGVRKLFVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQRAPRIFK 180

Query: 181  KRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQLPSF 240
            K SSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQLPSF
Sbjct: 181  KSSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQLPSF 240

Query: 241  FKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQHGYLPGP 300
            FKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFD S+KILFKINALVQHGYLPGP
Sbjct: 241  FKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDFSFKILFKINALVQHGYLPGP 300

Query: 301  LLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQLPWKPDI 360
            LLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQ WLKQQY SYYNSKQLPWKPDI
Sbjct: 301  LLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQKWLKQQYLSYYNSKQLPWKPDI 360

Query: 361  SLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRPID 420
            SLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIR ID
Sbjct: 361  SLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRSID 420

Query: 421  LSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSA 480
            LSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSA
Sbjct: 421  LSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSA 480

Query: 481  ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSD 540
            ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSD
Sbjct: 481  ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSD 540

Query: 541  GIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSMLKYKSL 600
            GIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDP SEKKLSLRKSMLKYKSL
Sbjct: 541  GIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYKSL 600

Query: 601  DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRALEVL 660
            DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQL+CILKDPSRALEVL
Sbjct: 601  DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLNCILKDPSRALEVL 660

Query: 661  ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720
            ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL
Sbjct: 661  ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720

Query: 721  DETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMV 780
            DETGTLKYGQVFVQCSVPGRSSESNFI EGKVVVAKNPCLHPGDMRVLNAVDVKALHHMV
Sbjct: 721  DETGTLKYGQVFVQCSVPGRSSESNFIPEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMV 780

Query: 781  DCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQLDHDVTI 840
            DCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPEL CIRPVKPMSYKPAPTIQLDHDVTI
Sbjct: 781  DCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELNCIRPVKPMSYKPAPTIQLDHDVTI 840

Query: 841  EEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPAN 900
            EEVQEYMANYMVNDGLGAIANAHT FADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEVQEYMANYMVNDGLGAIANAHTVFADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPD 960
            LPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPD
Sbjct: 901  LPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPD 960

Query: 961  MEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQI 1020
            MEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQI
Sbjct: 961  MEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQI 1020

Query: 1021 SHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGRYNEGME 1080
            SHAMRSLRKEARAWFNEKGSKPRCDDDDNGDE+EEFAKASAWYHVTYHQSYWGRYNEGME
Sbjct: 1021 SHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEDEEFAKASAWYHVTYHQSYWGRYNEGME 1080

Query: 1081 RDHFLSFPWCVSDKLIQIKKKKI 1104
            RDHFLSFPWCVSDKLIQIKKKKI
Sbjct: 1081 RDHFLSFPWCVSDKLIQIKKKKI 1103

[Close]

BLAST of MS009042.1 vs. NCBI nr
Match: XP_038875555.1 (probable RNA-dependent RNA polymerase 1 [Benincasa hispida])

HSP 1 Score: 1788.1 bits (4630), Expect = 0.0e+00
Identity = 883/1107 (79.77%), Postives = 982/1107 (88.71%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTIEIYGFR +VT +EVKEFLENHTGDGTV  VRI++ +DE +RF F TVRF SELAA
Sbjct: 1    MGKTIEIYGFRPEVTVDEVKEFLENHTGDGTVLTVRISKPKDEKTRFTFVTVRFKSELAA 60

Query: 61   GHVVSLA-AAEERLWYGSSYLKAREADRQN-RRGGVGVERMENLTLHLGSQISKEKLSVI 120
             ++V  A AAE++LW+GSSYLKARE +R +  RGG  +ERME++  HLGS ISK+K+ VI
Sbjct: 61   EYIVEKATAAEKKLWFGSSYLKAREVERASPARGGGEMERMEDVKGHLGSLISKDKMRVI 120

Query: 121  WKGENCSVEFGSGVRKLFVYVN--LEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAP 180
            W+GEN +VEFG GVRKL  Y++  +EYKME+ FE+IL V+ RCP +  SKF LIQLQGAP
Sbjct: 121  WEGENWNVEFGIGVRKLSFYLSYEVEYKMELAFENILGVEFRCPLNQPSKFFLIQLQGAP 180

Query: 181  RIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ 240
            RIFKK  S SSSSS  +S+ F F        RWIRDVDFTPSSCIGQSFALCLELSPG  
Sbjct: 181  RIFKK--SRSSSSSRLNSNEFCF--------RWIRDVDFTPSSCIGQSFALCLELSPGHH 240

Query: 241  LPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQHGY 300
            LP FF+ LVGY+E Y PF L+TGSSFSS SNLVPI+TPP+GFD+SYK LFKINALVQHGY
Sbjct: 241  LPPFFQNLVGYKETYAPFILQTGSSFSSISNLVPIITPPRGFDISYKTLFKINALVQHGY 300

Query: 301  LPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQLPW 360
            LPGP LDDEFFRLVD SRFRP+Y+E ALEK+FNLKEC YEPQ WLK  Y S+Y S QLPW
Sbjct: 301  LPGPTLDDEFFRLVDSSRFRPDYVEHALEKMFNLKECCYEPQKWLKHHYLSFYTSNQLPW 360

Query: 361  KPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKI 420
            KP+ISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVR++ DDIDNF+RVSFVDE+LDK+
Sbjct: 361  KPNISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEDLDKL 420

Query: 421  RPIDLSPRTSTA-NGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASR 480
              IDL+PR+S+A N ERTRVYDRILS LRNGIVIGDKKFEFLAFSASQLRENS WMFASR
Sbjct: 421  HSIDLAPRSSSAGNSERTRVYDRILSVLRNGIVIGDKKFEFLAFSASQLRENSFWMFASR 480

Query: 481  EGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVT 540
            EGLSAADIREWMGDFR+IRNVAKYAARLGQSFGSSRKTLCVEEHE EVI DVEVE     
Sbjct: 481  EGLSAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEEHEFEVIPDVEVERKKTK 540

Query: 541  YCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSML 600
            YCFSDGIGKIS+TLAEKVAE+CGLI+HTPSAFQIRYAGYKGVVAIDP  +KKLSLRKSML
Sbjct: 541  YCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTLKKKLSLRKSML 600

Query: 601  KYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSR 660
            KY SLDTQLDVL WSKY PCFLNRQVINLLSTLGIKDRVF KKQKEAI QLD IL+DPS+
Sbjct: 601  KYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSK 660

Query: 661  ALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRT 720
            ALEVLELMSPGEMT +LKE+LL+YKPN+EPFLNMMLRTFRADK LDLRTKSRIFVPKGRT
Sbjct: 661  ALEVLELMSPGEMTGILKELLLFYKPNEEPFLNMMLRTFRADKFLDLRTKSRIFVPKGRT 720

Query: 721  MMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKA 780
            MMGCLDET TL+YGQVFV CS+PGRS+ESNF+ +GKVVVAKNPCLHPGD+RVL+AVDVKA
Sbjct: 721  MMGCLDETRTLEYGQVFVHCSIPGRSNESNFVIKGKVVVAKNPCLHPGDVRVLDAVDVKA 780

Query: 781  LHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQLD 840
            LHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFVCWDPELTCI+PVKPMSY+PAPT+QLD
Sbjct: 781  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLD 840

Query: 841  HDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPKT 900
            HDVTIEEVQEY+ANYMVNDGLGAIANAHT FAD+ P+KAMS +CIKLAKLFSIAVDFPKT
Sbjct: 841  HDVTIEEVQEYLANYMVNDGLGAIANAHTVFADKNPKKAMSTECIKLAKLFSIAVDFPKT 900

Query: 901  GVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAK 960
            GVPANLP  LRVHE+PDFM+K ++P Y S GV+GKLF+ VKDVS + NT+E +TREVA  
Sbjct: 901  GVPANLPRNLRVHEYPDFMDKPNKPTYASNGVLGKLFQGVKDVSSDVNTLEIFTREVAIN 960

Query: 961  CYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRT 1020
            CYDPDME+DGF+KYL+EAFD+KTRYD+KLGNLMDYYGI+TEPELVSGNILR+ KSFDKR 
Sbjct: 961  CYDPDMEVDGFDKYLSEAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRN 1020

Query: 1021 DMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGRY 1080
            D+EQI+ AM+SLRKEARAWFNEKGSK   D+     EEEE+AKASAWYHVTYH  YWGRY
Sbjct: 1021 DLEQITFAMKSLRKEARAWFNEKGSKSTYDNSKG--EEEEYAKASAWYHVTYHPDYWGRY 1080

Query: 1081 NEGMERDHFLSFPWCVSDKLIQIKKKK 1103
            NEGM+RDHFLSFPWCV+DKLIQIK++K
Sbjct: 1081 NEGMQRDHFLSFPWCVADKLIQIKREK 1095

[Close]

BLAST of MS009042.1 vs. NCBI nr
Match: KAG6579193.1 (RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1770.0 bits (4583), Expect = 0.0e+00
Identity = 874/1110 (78.74%), Postives = 975/1110 (87.84%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTIEIYGF  +VT +EVKEF+ENHTGDGTV  VRI++  DE +RF FATVRFTS+L  
Sbjct: 7    MGKTIEIYGFPAEVTADEVKEFIENHTGDGTVLTVRISKFNDEKARFTFATVRFTSKLGG 66

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQNRRGGVG-----VERMENLTLHLGSQISKEKL 120
             +VV+ AAAE+RLW+GSSYLKAR+ +R+ +          +ERMEN+ +  GS +SKEK+
Sbjct: 67   EYVVAQAAAEKRLWFGSSYLKARKVEREIKTAAAARVHGELERMENVNVQWGSLVSKEKM 126

Query: 121  SVIWKGENCSVEFGSGVRKLFVYVN---LEYKMEVWFESILRVQLRCPPDGASKFLLIQL 180
             VIWKG   SVE+G GVRKL  Y++   +EYKME+ FE+IL VQLRC  D  SK  LIQL
Sbjct: 127  KVIWKGGKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGVQLRCSVDRGSKLFLIQL 186

Query: 181  QGAPRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELS 240
            QGAPRIFKK   SSSS  SS          +S+G RWIRDVDFTPSSCIGQSFALCLELS
Sbjct: 187  QGAPRIFKKAPLSSSSRLSS---------EESTGFRWIRDVDFTPSSCIGQSFALCLELS 246

Query: 241  PGDQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALV 300
             GDQLPSFF+TLVGY+E Y PF L+TGSS SS SNLVPI+TPPQGFD+ YKILFKINAL+
Sbjct: 247  HGDQLPSFFQTLVGYKESYAPFILQTGSSLSSISNLVPIITPPQGFDIPYKILFKINALL 306

Query: 301  QHGYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSK 360
            QHGYLPGP LD+EFFRLVD SRFRP+Y+E AL+KLF+LKEC YEPQ WLKQQY S+Y+SK
Sbjct: 307  QHGYLPGPALDNEFFRLVDSSRFRPDYVEYALDKLFHLKECCYEPQKWLKQQYLSFYSSK 366

Query: 361  QLPWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEE 420
            QLPWKP+ISLDDGLVYVHRVQITP+KVYFRGPEANLSNRVVR + DD+DNF+RVSFVDEE
Sbjct: 367  QLPWKPNISLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEE 426

Query: 421  LDKIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMF 480
            LDK+  IDLSPRTS  N  RTRVYDR+LS LRNGIVIGDKKFEFLAFSASQLRENS WMF
Sbjct: 427  LDKLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMF 486

Query: 481  ASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETN 540
            ASR+GLSAADIREWMGD RQIRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI+DVEVETN
Sbjct: 487  ASRKGLSAADIREWMGDLRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETN 546

Query: 541  NVTYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRK 600
             +TYCFSDGIGKIS TLAEKVAE+CGLI+HTPSAFQIRYAGYKGVVAIDP S KKLSLRK
Sbjct: 547  KITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRK 606

Query: 601  SMLKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKD 660
            SMLKY SLDTQ+DVL+WSKY PCFLNRQVINLLSTLGIKDRVF KKQKEAI QLD IL+D
Sbjct: 607  SMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILED 666

Query: 661  PSRALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPK 720
            PSRALEVLELMSPGEMTS+LKE+LL YKPN+EPFLNMMLRTFRA KLLDLRTKSRIFVPK
Sbjct: 667  PSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPK 726

Query: 721  GRTMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVD 780
            GRTMMGCLDET TL+YGQVFV CS+PGRSSESNF+ +GKVVVAKNPCLHPGD+R+L+AVD
Sbjct: 727  GRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVD 786

Query: 781  VKALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTI 840
            VKALHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFV WDPELT I+PVKPMSY+PAPT+
Sbjct: 787  VKALHHMVDCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTM 846

Query: 841  QLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDF 900
            QLDHDVTIEEVQ Y+  YMVNDGLG IANAHT FAD++P+KAM+A+CIKLAKLFSIAVDF
Sbjct: 847  QLDHDVTIEEVQGYLVKYMVNDGLGGIANAHTVFADKKPKKAMTAECIKLAKLFSIAVDF 906

Query: 901  PKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREV 960
            PKTGVPAN P  LRV E+PDFMEK D+P Y S GV+GKLFR VKDVS + NT+E ++REV
Sbjct: 907  PKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREV 966

Query: 961  AAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFD 1020
            A KCYDPDME+DGFE YL+EAF+FK RYD+KLGNLMDYYGI+TEPEL+SGNILR+ KSFD
Sbjct: 967  ATKCYDPDMEVDGFEDYLSEAFEFKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFD 1026

Query: 1021 KRTDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYW 1080
            KR DMEQIS AM+SLRKEAR+WFNEKGSK   D+DDN  + EE+AKASAWY VTYH  YW
Sbjct: 1027 KRNDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDN--KNEEYAKASAWYRVTYHPDYW 1086

Query: 1081 GRYNEGMERDHFLSFPWCVSDKLIQIKKKK 1103
            GRYNEGM+RDHFLSFPWCVSDKLI+IK++K
Sbjct: 1087 GRYNEGMQRDHFLSFPWCVSDKLIRIKREK 1105

[Close]

BLAST of MS009042.1 vs. NCBI nr
Match: XP_022994004.1 (probable RNA-dependent RNA polymerase 1 [Cucurbita maxima])

HSP 1 Score: 1767.3 bits (4576), Expect = 0.0e+00
Identity = 875/1113 (78.62%), Postives = 976/1113 (87.69%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGK IEIYGF  +VT +EVKEF+ENHTGDGTV  VRI++  DE +RF FATVRFTS+L  
Sbjct: 7    MGKMIEIYGFPAEVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQNR--------RGGVGVERMENLTLHLGSQISK 120
             +VV+ AAAE+RLW+GSSYLKAR+ +R+ R        R   G+ERMEN+ +  GS +SK
Sbjct: 67   EYVVAQAAAEKRLWFGSSYLKARKVEREIRTATAAAAARVHGGLERMENVNVQWGSLVSK 126

Query: 121  EKLSVIWKGENCSVEFGSGVRKLFVYVN---LEYKMEVWFESILRVQLRCPPDGASKFLL 180
            EK+ VIWK    SVE+G G RKL  Y++   +EYKME+ FE+IL VQLRC  D  S+  L
Sbjct: 127  EKMKVIWKEGKWSVEYGIGARKLGFYLSYEGVEYKMELCFENILGVQLRCSGDRGSELFL 186

Query: 181  IQLQGAPRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCL 240
            IQLQGAPRIFKK  SSSSS  SS          +S+G RWIRDVDFTPSSCIGQSFALCL
Sbjct: 187  IQLQGAPRIFKKTPSSSSSRLSS---------EESTGFRWIRDVDFTPSSCIGQSFALCL 246

Query: 241  ELSPGDQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKIN 300
            ELSPGDQLPSFF+TLVGY+E Y PF L  GSS SS SNLVPI+TPPQGFD+SYKILFKIN
Sbjct: 247  ELSPGDQLPSFFRTLVGYKESYAPFILHPGSSLSSISNLVPIITPPQGFDISYKILFKIN 306

Query: 301  ALVQHGYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYY 360
            AL+QHGYLPGP LD+EFFRLVD SRFRPEYIE ALEKLF+ KEC YEPQ WLKQQY S+Y
Sbjct: 307  ALLQHGYLPGPALDNEFFRLVDSSRFRPEYIEYALEKLFHFKECCYEPQKWLKQQYLSFY 366

Query: 361  NSKQLPWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFV 420
            +SKQLP KP++SLDDGLVYVHRVQITP+KVYFRGPEANLSNRVVR + DD+DNF+RVSFV
Sbjct: 367  SSKQLPCKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFV 426

Query: 421  DEELDKIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSV 480
            DEELDK+  IDLSPRTS  N  RTRVYDR+LS LRNGIVIGDKKFEFLAFSASQLRENS 
Sbjct: 427  DEELDKLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSC 486

Query: 481  WMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEV 540
            WMFASR+GLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEV
Sbjct: 487  WMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVIPDVEV 546

Query: 541  ETNNVTYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLS 600
            ETN +TYCFSDGIGKIS TLAEKVAE+CGLI+HTPSAFQIRYAGYKGVVAIDP S KKLS
Sbjct: 547  ETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLS 606

Query: 601  LRKSMLKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCI 660
            LRKSMLKY SLDTQ+DVL+WSKY PCFLNRQVINLLSTLGIKDRVF KKQKEAI QLD I
Sbjct: 607  LRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSI 666

Query: 661  LKDPSRALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIF 720
            L+DPSRALEVLELMSPGEMTS+LKE+LL YKPN+EPFLNMMLRTFRA KLLDLRTKSRIF
Sbjct: 667  LEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIF 726

Query: 721  VPKGRTMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLN 780
            VPKGRTMMGCLDET TL+YGQVFV CS+PGRSSESNF+ +GKVVVAKNPCLHPGD+R+L+
Sbjct: 727  VPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLD 786

Query: 781  AVDVKALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPA 840
            AVDVKALHHMV+CVVFPQKG+RPHPNECSGSDLDGDLYFV WDPELT I+PVKPMSY+PA
Sbjct: 787  AVDVKALHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPA 846

Query: 841  PTIQLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIA 900
            PT++LDHDVTIEEVQEY+A YMVNDGLG IANAHT FAD++P+KAM+A+CIKLAKLFSIA
Sbjct: 847  PTMRLDHDVTIEEVQEYLAKYMVNDGLGGIANAHTVFADKKPKKAMTAECIKLAKLFSIA 906

Query: 901  VDFPKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYT 960
            VDFPKTGVPAN P  LRV E+PDFMEK D+P Y S GV+GKLFR VKDVS + NTIE ++
Sbjct: 907  VDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTIEIFS 966

Query: 961  REVAAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGK 1020
            REVA KCYDPDME+DGFE YL+EAF++K RYD+KLGNLMDYYGI+TEPEL+SGNILR+ K
Sbjct: 967  REVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAK 1026

Query: 1021 SFDKRTDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQ 1080
            SFDKR D+EQIS A++SLRKEAR+WFNEKGSK  CD+D   D++EE+AKASAWY VTYH 
Sbjct: 1027 SFDKRNDLEQISLAIKSLRKEARSWFNEKGSKSACDED---DKDEEYAKASAWYRVTYHP 1086

Query: 1081 SYWGRYNEGMERDHFLSFPWCVSDKLIQIKKKK 1103
             YWGRYNEGM+RDHFLSFPWCVSDKLIQIK++K
Sbjct: 1087 DYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREK 1107

[Close]

BLAST of MS009042.1 vs. NCBI nr
Match: XP_022938807.1 (probable RNA-dependent RNA polymerase 1 [Cucurbita moschata])

HSP 1 Score: 1765.0 bits (4570), Expect = 0.0e+00
Identity = 873/1108 (78.79%), Postives = 974/1108 (87.91%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTIEIYGF   VT +EVKEF+ENHTGDGTV  VRI++  DE +RF FATV+FTS+L  
Sbjct: 7    MGKTIEIYGFPTQVTADEVKEFIENHTGDGTVLTVRISKLNDEKARFTFATVQFTSKLGG 66

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQNR---RGGVGVERMENLTLHLGSQISKEKLSV 120
             +VV+ AAAE+RLW+GSSYLKAR+ +R+ +   R    +ERMEN+ +  GS +SKE++ V
Sbjct: 67   EYVVAQAAAEKRLWFGSSYLKARKVEREIKTAARVHGELERMENVNVQWGSLVSKEEMKV 126

Query: 121  IWKGENCSVEFGSGVRKLFVYVN---LEYKMEVWFESILRVQLRCPPDGASKFLLIQLQG 180
            IWKG   SVE+G GVRKL  Y++   +EYKME+ FE+IL VQLRC  D  SK  LIQLQG
Sbjct: 127  IWKGGKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGVQLRCSVDRGSKLFLIQLQG 186

Query: 181  APRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPG 240
            APRIFKK   SSSS  SS          +S+G RWIRDVDFTPSSCIGQSFALCLELS G
Sbjct: 187  APRIFKKAPLSSSSRLSS---------EESTGFRWIRDVDFTPSSCIGQSFALCLELSHG 246

Query: 241  DQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQH 300
            DQLPSFF+TLVGY+E Y PF L+TGSS SS SNLVPI+TPPQGFD+ YKILFKINAL+QH
Sbjct: 247  DQLPSFFQTLVGYKESYAPFILQTGSSLSSISNLVPIITPPQGFDIPYKILFKINALLQH 306

Query: 301  GYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQL 360
            GYLPGP LD+EFFRLVD SRFRP+Y+E AL+KLF+ KEC YEPQ WLKQQY S+Y+SKQL
Sbjct: 307  GYLPGPALDNEFFRLVDSSRFRPDYVEYALDKLFHFKECCYEPQKWLKQQYLSFYSSKQL 366

Query: 361  PWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELD 420
            PWKP+ISLDDGLVYVHRVQITP+KVYFRGPEANLSNRVVR + DD+DNF+RVSFVDEELD
Sbjct: 367  PWKPNISLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELD 426

Query: 421  KIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFAS 480
            K+  IDLSPRTS  N  RTRVYDR+LS LRNGIVIGDKKFEFLAFSASQLRENS WMFAS
Sbjct: 427  KLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFAS 486

Query: 481  REGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNV 540
            R+GLSAADIREWMGD RQIRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI+DVEVETN +
Sbjct: 487  RKGLSAADIREWMGDLRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKI 546

Query: 541  TYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSM 600
            TYCFSDGIGKIS TLAEKVAE+CGLI+HTPSAFQIRYAGYKGVVAIDP S KKLSLRKSM
Sbjct: 547  TYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSM 606

Query: 601  LKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPS 660
            LKY SLDTQ+DVL+WSKY PCFLNRQVINLLSTLGIKDRVF KKQKEAI QLD IL+DPS
Sbjct: 607  LKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPS 666

Query: 661  RALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGR 720
            RALEVLELMSPGEMTS+LKE+LL YKPN+EPFLNMMLRTFRA KLLDLRTKSRIFVPKGR
Sbjct: 667  RALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGR 726

Query: 721  TMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVK 780
            TMMGCLDET TL+YGQVFV CS+PGRSSESNF+ +GKVVVAKNPCLHPGD+R+L+AVDVK
Sbjct: 727  TMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVK 786

Query: 781  ALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQL 840
            ALHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFV WDPELT I+PVKPMSY+PAPT+QL
Sbjct: 787  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMQL 846

Query: 841  DHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPK 900
            DHDVTIEEVQ Y+  YMVNDGLG IANAHT FAD++P+KAM+A+CIKLAKLFSIAVDFPK
Sbjct: 847  DHDVTIEEVQGYLVKYMVNDGLGGIANAHTVFADKKPKKAMAAECIKLAKLFSIAVDFPK 906

Query: 901  TGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAA 960
            TGVPAN P  LRV E+PDFMEK D+P Y S GV+GKLFR VKDVS + NT+E ++REVA 
Sbjct: 907  TGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVAT 966

Query: 961  KCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKR 1020
            KCYDPDME+DGFE YL+EAF+FK RYD+KLGNLMDYYGI+TEPEL+SGNILR+ KSFDKR
Sbjct: 967  KCYDPDMEVDGFEDYLSEAFEFKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKR 1026

Query: 1021 TDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGR 1080
             DMEQIS AM+SLRKEAR+WFNEKGSK   D+DDN  + EE+AKASAWY VTYH  YWGR
Sbjct: 1027 NDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDN--KNEEYAKASAWYRVTYHPDYWGR 1086

Query: 1081 YNEGMERDHFLSFPWCVSDKLIQIKKKK 1103
            YNEGM+RDHFLSFPWCVSDKLIQIK++K
Sbjct: 1087 YNEGMQRDHFLSFPWCVSDKLIQIKREK 1103

[Close]

BLAST of MS009042.1 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1238.8 bits (3204), Expect = 0.0e+00
Identity = 644/1110 (58.02%), Postives = 804/1110 (72.43%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTI+++GF   V+ EEVK+FLE  TG GTV  +++ + +    R  +A V+FTSE   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRV-YAIVQFTSERHT 60

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQ-NRRGGVGVERMENLTLHLGSQISKEKLSVIW 120
              +++  AA ERL+YG SYLKA E ++    +    +  +  L +  G Q+S +K   +W
Sbjct: 61   RLIIT--AAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLW 120

Query: 121  KGENCSVEFGSGVRKL---FVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAP 180
              ++  V FG G+RKL   F +   +Y++E+ +E+I ++ L  P   +SKFL+IQ+ GAP
Sbjct: 121  SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 180

Query: 181  RIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ 240
            +IF+K     +         FY   S  S  +WIR  DFT SSCIGQS A CLEL     
Sbjct: 181  KIFEKEDQPINLLFGIMD--FY---SDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLN 240

Query: 241  LPSFFKTLVGY-EEIYGPFNLETGSSFSSTSN-LVPIVTPPQGFDLSYKILFKINALVQH 300
            +P F +    Y E     F +E+GSS+SS +N LVP+V PP GF L ++ILFK+N LVQ+
Sbjct: 241  VPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQN 300

Query: 301  GYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQL 360
              L GP LD +F+RL++  ++    I+  LEKLF+L EC YEP +WL+ +Y+ + +  +L
Sbjct: 301  ACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKL 360

Query: 361  PWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELD 420
            P  P ISLDDGLVY++RVQ+TP++VYF GPE N+SNRV+R YS  I+NF+RVSFVDE+L+
Sbjct: 361  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 420

Query: 421  KIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFAS 480
            K+R +DLSPR+ST    RT++YDRI S LR+GIVIGDKKFEFLAFS+SQLRENS WMFA 
Sbjct: 421  KVRSMDLSPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 480

Query: 481  REGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNV 540
             + ++AA IR WMGDF  IRNVAKYAARLGQSF SSR+TL V   EIEVI DVE+ +   
Sbjct: 481  IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 540

Query: 541  TYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSM 600
             Y FSDGIGKIS   A KVA +CGL   +PSAFQIRY GYKGVVA+DP S KKLSLRKSM
Sbjct: 541  RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 600

Query: 601  LKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPS 660
             K++S +T+LDVLAWSKY PC++NRQ+I LLSTLG+ D VFEKKQ+E + +LD IL  P 
Sbjct: 601  SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPL 660

Query: 661  RALEVLELMSPGEMTSVLKEMLLY-YKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKG 720
             A E L LM+PGE T++LK ++L  YKP+ EPFL+MML+ FRA KLL+LRTK+RIF+  G
Sbjct: 661  EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 720

Query: 721  RTMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDV 780
            R+MMGCLDET TL+YGQV VQ S P R     FI  G VVVAKNPCLHPGD+RVL AV+V
Sbjct: 721  RSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNV 780

Query: 781  KALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQ 840
             AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL   R  +PM Y P PT  
Sbjct: 781  PALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQI 840

Query: 841  LDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFP 900
            LDHDVTIEEV+EY ANY+VND LG IANAHTAFAD+EP KA S  CI+LAK FS AVDFP
Sbjct: 841  LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFP 900

Query: 901  KTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVA 960
            KTGV A +P  L V E+PDFMEK D+P YESK VIGKLFR VK+ +    +I+++T +VA
Sbjct: 901  KTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVA 960

Query: 961  AKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDK 1020
            +K YD DME+DGFE+Y++EAF  K  YD+KLGNLMDYYGI+TE E++SG I+R+ KSF K
Sbjct: 961  SKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTK 1020

Query: 1021 RTDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWG 1080
            R D E I  A+R+LRKE  + FN            + +EE E AKASAWYHVTYH SYWG
Sbjct: 1021 RRDAESIGRAVRALRKETLSLFNA-----------SEEEENESAKASAWYHVTYHSSYWG 1080

Query: 1081 RYNEGMERDHFLSFPWCVSDKLIQIKKKKI 1104
             YNEG+ RDHFLSF WCV DKL++IKK  +
Sbjct: 1081 LYNEGLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]

BLAST of MS009042.1 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 918.7 bits (2373), Expect = 6.3e-266
Identity = 453/728 (62.23%), Postives = 570/728 (78.30%), Query Frame = 0


Query: 377  SKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRPIDLSPRTSTA-NGERTRV 436
            S VYF GPE N+SNRVVR +S DI+NF+R+SFVDE+ +K+R  DLSPR+++  +  RT +
Sbjct: 7    STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66

Query: 437  YDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSAADIREWMGDFRQIRN 496
            Y R+LS L +GI IG K FEFLAFS+SQLR+NS WMFASR+GL+A+DIR WMGDFR IRN
Sbjct: 67   YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126

Query: 497  VAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSDGIGKISETLAEKVAE 556
            VAKYAARLGQSF SS +TL V+++E+E I+D++   N   + FSDGIGKIS   A +VA 
Sbjct: 127  VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 186

Query: 557  RCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSMLKYKSLDTQLDVLAWSKYLPC 616
            +C L    PSAFQIRY GYKGVVA+DP S  KLSLRKSMLK++S +  +DVLA+SKY P 
Sbjct: 187  KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 246

Query: 617  FLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRALEVLELMSPGEMTSVLKEM 676
            FLNRQ+I LLSTLG++D VFE+KQ+EA+ QL+ ++ DP  A+E +ELM  GE+T+ +KE+
Sbjct: 247  FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 306

Query: 677  LLY-YKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETGTLKYGQVFVQ 736
            LL  Y+P+ EP+L+M+L+TFRA KLL+L+TKSRI +PKGR MMGCLDET TLKYGQVF++
Sbjct: 307  LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 366

Query: 737  CSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMVDCVVFPQKGQRPHP 796
             +  G +    F   GKVV+AKNPCLHPGD+R+L+AVDV  LHHM +CVVFPQ+G RPHP
Sbjct: 367  -ATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHP 426

Query: 797  NECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQLDHDVTIEEVQEYMANYMVND 856
            NECSGSDLDGD+YFV WDP L   R V PM Y PAPT  LDHDVTIEEV+EY  NY+VN+
Sbjct: 427  NECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNE 486

Query: 857  GLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPANLPPFLRVHEFPDFM 916
             LG IANAH  FAD+E  KA S+ CI+LAKLFSIAVDFPKTGVPA +PP L V E+PDFM
Sbjct: 487  SLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFM 546

Query: 917  EKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPDMEIDGFEKYLNEAF 976
            EKLD+  YESKGVIGKL+R +K    +T  I+ +TREVA + YD DM +DG+E Y+ EA 
Sbjct: 547  EKLDKVTYESKGVIGKLYREIKK---HTPHIKHFTREVARRSYDTDMIVDGYEDYITEAM 606

Query: 977  DFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQISHAMRSLRKEARAW 1036
              K  YD+KLGNLMD+YGI++E E++SG IL++ K+F K++D + I  A+RSLRKEAR+ 
Sbjct: 607  ALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSR 666

Query: 1037 FNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGRYNEGMERDHFLSFPWCVSDK 1096
            F+E       DD+ +G +  E AKASAWYHVTYH  +WG YNEG ER HF+SFPWC+ +K
Sbjct: 667  FSEMS----LDDNGHGHDASE-AKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEK 722

Query: 1097 LIQIKKKK 1103
            L++IK+++
Sbjct: 727  LLRIKQRR 722

[Close]

BLAST of MS009042.1 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 734.9 bits (1896), Expect = 1.3e-210
Identity = 443/1133 (39.10%), Postives = 652/1133 (57.55%), Query Frame = 0


Query: 4    TIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAAGHV 63
            T++I    + +  +E+  FLE H G+ TV  + I  +RD      FA V+FT+ L     
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT-LEVKSR 70

Query: 64   VSLAAAEERLWYGSSYLKAREA-DRQNRRGGVGVERMENLTLHLGSQISKEKLSVI---W 123
              L +++ +L + +  L+  EA D    R     +R++++ L +G   S EK       W
Sbjct: 71   AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 130

Query: 124  KGENCSVEFGSGVRKLFVYVNLE-YKMEVWFESILRVQLRCPPDGASKF--LLIQLQGAP 183
             G  C +       + +V+ + + YK+EV FE I+     C    AS+    L++L+  P
Sbjct: 131  DGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGP 190

Query: 184  RIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ 243
            ++FK+ +   ++   S   RF     +     WIR  DF+ S  IG S   CLE+  G  
Sbjct: 191  KVFKRVTVHIATKFKSDRYRFC---KEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGST 250

Query: 244  LPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPP-QGFDLSYKILFKINALVQHG 303
            +   F  L  Y E         G +F+S + +VP++     G +  Y+ILF++NALV   
Sbjct: 251  MLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQ 310

Query: 304  YLP-GPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQL 363
             +      D E  +++         +   L+KL       Y+P  ++K Q +S    K++
Sbjct: 311  KISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVV--KKM 370

Query: 364  PWKPDIS----LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVD 423
               P  +     +  ++   R  +TPSK+Y  GPE   +N VV+ +++ + +F+RV+FV+
Sbjct: 371  KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424  EELDKIRPIDLSPRTST---ANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLREN 483
            E+  K+    LS  +         RT +Y+R+LS L  GI +G K+FEFLAFSASQLR N
Sbjct: 431  EDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGN 490

Query: 484  SVWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDV 543
            SVWMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E I D+
Sbjct: 491  SVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDI 550

Query: 544  EVETNNVTYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKK 603
            EV T+   YCFSDGIGKIS   A++VA++CGL +H PSAFQIRY GYKGV+A+D  S +K
Sbjct: 551  EVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRK 610

Query: 604  LSLRKSMLKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLD 663
            LSLR SMLK+ S +  L+V  W++ +PCFLNR++I LLSTLGI+D +FE  Q   +  L 
Sbjct: 611  LSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLG 670

Query: 664  CILKDPSRALEVLELMSPGEMTSVLKEMLLY-YKPNKEPFLNMMLRTFRADKLLDLRTKS 723
             +L+D   AL VL+ +S     ++L +MLL  Y P+ EP+L+MMLR     +L +L+++ 
Sbjct: 671  NMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRC 730

Query: 724  RIFVPKGRTMMGCLDETGTLKYGQVFVQCSVP------------GRSSESNFIAEGKVVV 783
            RI VPKGR ++GC+DE G L+YGQV+V+ ++              +  E   +  GKVVV
Sbjct: 731  RILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVV 790

Query: 784  AKNPCLHPGDMRVLNAVDVKALHH--MVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWD 843
             KNPCLHPGD+RVL+A+          +DC++FPQKG+RPHPNECSG DLDGD +FV WD
Sbjct: 791  TKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWD 850

Query: 844  PELTCIRPVKPMSYKPAPTIQLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPR 903
             ++       PM Y  +    +DHDVT+EE+ ++  +YM++D LG I+ AH   ADR+P 
Sbjct: 851  EKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPE 910

Query: 904  KAMSAKCIKLAKLFSIAVDFPKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLF 963
            KA S KC++LA L S AVDF KTG PA +P  L+  EFPDF+E+ ++P Y S+ V GKL+
Sbjct: 911  KARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLY 970

Query: 964  RSVKDVSFNTNTIETYTREVAAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYG 1023
            R+VK  S      E  + +  A  YD  +E  GFE ++  A   +  Y  KL +LM YYG
Sbjct: 971  RAVKS-SLAQRKPEAESEDTVA--YDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1030

Query: 1024 IRTEPELVSGNILRVGKSFDKRTD------MEQISHAMRSLRKEARAWFNEKGSKPRCDD 1083
               E E+++G IL+  + +  R +       ++I+ +++ L KEA  WF +      C+ 
Sbjct: 1031 AANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKS-----CE- 1090

Query: 1084 DDNGDEEEEFAKASAWYHVTYHQSYWGRYNEGMERDHFLSFPWCVSDKLIQIK 1100
                DE+++   ASAWY+VTY+       N   E+  FLSFPW V D L+ IK
Sbjct: 1091 ----DEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIK 1114

[Close]

BLAST of MS009042.1 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 697.2 bits (1798), Expect = 3.0e-199
Identity = 419/1087 (38.55%), Postives = 624/1087 (57.41%), Query Frame = 0


Query: 51   TVRFTSELAAGHVVSLAAAEERLWYGSSYLKA---------READRQNRRGGVGVERMEN 110
            TV+F S  AA     LA++     +  + L           R +D   R  G G      
Sbjct: 59   TVQFGSAAAAAAAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAG------ 118

Query: 111  LTLHLGSQISKEKLSVIWKGENCSVEFGSGVRKLFVYV---NLEYKMEVWFESILRVQLR 170
              L +G ++++         +    E   G R++ +Y+   +  YK+EV FE  ++  L 
Sbjct: 119  --LVVGDRVAERVFEAADAWDGVRAEVIPGKRRVDLYLEHDSQRYKLEVLFED-MKDCLG 178

Query: 171  CPPDGASKFLLIQLQGAPRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPS 230
            C  DG    +L+QL  APRI     S  + +S     RF+  +  +  S W+R +DFTP+
Sbjct: 179  CTLDGMGA-ILLQLNYAPRI-HTAISGPAVNSRFMDDRFHACKEDAKFS-WVRALDFTPN 238

Query: 231  SCIGQSFALCLELSPGDQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGF 290
               G+   L L+L     +    K+L  +    G   + +     ++SN+VP+V  P+ +
Sbjct: 239  YSFGRCSTLVLKLGKSALVSDILKSL-PFSGNLGELTMNSMDGVGASSNVVPLVHCPRDY 298

Query: 291  DLSYKILFKINALVQHGYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQ 350
             + Y++LF++N+L+  G +    ++ + F+ +       +   R  EK+  L+   Y P 
Sbjct: 299  SVPYEVLFRLNSLMHMGKIVAKHVNADLFKAL--QELPVDVSRRIFEKMHKLESTCYGPL 358

Query: 351  NWLKQQYRSYYNSKQ--LPWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQY 410
             +++Q+  S   S    L  + +   +  L+  +RV ITPSK++  GPE  ++N VV+ +
Sbjct: 359  QFIQQEAYSMKRSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHH 418

Query: 411  SDDIDNFIRVSFVDEELDKIRPIDLSPRTST---ANGERTRVYDRILSTLRNGIVIGDKK 470
            S    +F+RV+FVDE+  K+    +S R      +   +T +Y RILS L+ G  IG K 
Sbjct: 419  SAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKN 478

Query: 471  FEFLAFSASQLRENSVWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKT 530
            FEFLAFSASQLR NSVWMFAS   L+A  IR WMG F  IR+V+K AAR+GQ F SSR+T
Sbjct: 479  FEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQT 538

Query: 531  LCVEEHEIEVITDVEVETNNVTYCFSDGIGKISETLAEKVAERCGL-INHTPSAFQIRYA 590
              V   ++EVI D+E+ T+   Y FSDGIGKIS   A++VA   GL   + PSAFQIRY 
Sbjct: 539  FEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYG 598

Query: 591  GYKGVVAIDPKSEKKLSLRKSMLKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKD 650
            GYKGV+AIDP S   LSLR SM K++S    L++ +WSK  PC++NR++I+LLSTLGI+D
Sbjct: 599  GYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRD 658

Query: 651  RVFEKKQKEAIYQLDCILKDPSRALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLR 710
             +F   Q++ + + + +L +   AL VL  +   E  + +K +L  Y+P+ EP+L+M+L+
Sbjct: 659  EIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILK 718

Query: 711  TFRADKLLDLRTKSRIFVPKGRTMMGCLDETGTLKYGQVFVQCSVPGR----SSESNFIA 770
              + ++L D+RT+ +I VPKGR ++GCLDETG L+YGQV+++ +   +    S++S F  
Sbjct: 719  AHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYN 778

Query: 771  E--------GKVVVAKNPCLHPGDMRVLNAVDVKALHHMVDCVVFPQKGQRPHPNECSGS 830
            +        GKV + KNPCLHPGD+RVL A+    L  MVDC+VFPQ+G+RPHPNECSG 
Sbjct: 779  DDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGG 838

Query: 831  DLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQLDHDVTIEEVQEYMANYMVNDGLGAIA 890
            DLDGDLYF+ WD +L   +   PM Y       +DH VT+EE+Q++  +YM+ND LGAI+
Sbjct: 839  DLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAIS 898

Query: 891  NAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPANLPPFLRVHEFPDFMEKLDRP 950
             AH   ADR P KA S +C++LA L S+AVDF KTG PA +P  LR  E+PDFME+ ++P
Sbjct: 899  TAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKP 958

Query: 951  AYESKGVIGKLFRSV---KDVSFNTNTIETYTREVAAKCYDPDMEIDGFEKYLNEAFDFK 1010
             Y S GV+GKL+RS     + S ++  + + + +  +  YDPD+E+ G +++L  A ++ 
Sbjct: 959  MYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQ-PSPTYDPDLEVPGSDEFLQAAEEYY 1018

Query: 1011 TRYDYKLGNLMDYYGIRTEPELVSGNI----LRVGKSFDKRTDM-EQISHAMRSLRKEAR 1070
              Y+ KL  LM+YY    E E+++GNI    L + +   +  +M ++I  A+ +L +EAR
Sbjct: 1019 ELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREAR 1078

Query: 1071 AWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGRYNEGMERDHFLSFPWCVS 1100
             W              +  EE+    ASAWY VTYH        +      F SFPW   
Sbjct: 1079 GWLL-----------SSRKEEDASRMASAWYRVTYHP-------DRRRGKRFWSFPWIAC 1111

[Close]

BLAST of MS009042.1 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.0e-158
Identity = 379/1068 (35.49%), Postives = 562/1068 (52.62%), Query Frame = 0


Query: 98   RMENLTLHLGSQISKEKLSVIWKGENC-----------------SVEFGSGVRKLFVYVN 157
            ++  +TL +G+ +S++   V W+ E                   S  F      +   +N
Sbjct: 131  KLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVIN 190

Query: 158  LEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAPRIFKKRSSSSSSSSSSSSSRFYFK 217
             +YK+E+    I  V+      G    L++QL  +PR++ + +      +          
Sbjct: 191  CDYKLELLVRDIQTVRQYKTLHGF--VLILQLASSPRVWYRTADDDIYDTVPG------- 250

Query: 218  ESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ------LPSFFKTLVGYEEIYGPF 277
            +       WIR  DFT    IG+  +  + +SP  +      L  F    V  E +  P 
Sbjct: 251  DLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPP 310

Query: 278  NLETGSSFSS-TSNLVPIVTPPQGFDLSYKILFKINALVQHGYLPGPLLDDEFFRLVDPS 337
             +     F    S+    +   +G  +S++I+F +N+++  G      L + FF L+   
Sbjct: 311  RIRNEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLL--- 370

Query: 338  RFRPEYIERA-LEKLFNLKECFYEPQNWLKQQYRSYYNSKQLPWKPDISLDDGLVYVHRV 397
            R +P+ +  A L+ L   K   ++    LK        + +L    + S D  +  + R+
Sbjct: 371  RNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRRL 430

Query: 398  QITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRPIDLS--------PR 457
             ITP++ Y   PE  LSNRV+R+Y    + F+RV+F+DE +  I    LS          
Sbjct: 431  VITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDL 490

Query: 458  TSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSAADIR 517
            TS++  ++T V+ R+ S L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+
Sbjct: 491  TSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIK 550

Query: 518  EWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDV-EVETNNVTYCFSDGIG 577
             WMG F+  +NVAK AAR+G  F S+  T+ V  HE++  T+V ++E N   Y FSDGIG
Sbjct: 551  TWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVD--TEVPDIERNG--YVFSDGIG 610

Query: 578  KISETLAEKVAERCGL-INHTPSAFQIRYAGYKGVVAIDPKSEK--KLSLRKSMLKYKSL 637
             I+  LA++V E+  L ++++P A+QIRYAG+KGVVA  P      +L+LR SM K+ S 
Sbjct: 611  TITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSK 670

Query: 638  DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRALEVL 697
             T L++ +W+++ P FLNRQ+I LLS LG+ D +F   Q+  +Y+L+ IL D   A EVL
Sbjct: 671  HTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL 730

Query: 698  ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 757
                  +  +    +   +KP  EP L  ML + R  +L  LR KSRIFV  GR +MGCL
Sbjct: 731  TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCL 790

Query: 758  DETGTLKYGQVFVQCSVP----------GRSSESNF---IAEGKVVVAKNPCLHPGDMRV 817
            DE G L++GQ F+Q S P           R  E+     + +G V +AKNPCLHPGD+R+
Sbjct: 791  DEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRI 850

Query: 818  LNAVDVKALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVK----P 877
            L AVDV  LHHM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L  I P +     
Sbjct: 851  LEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL--IPPNRKSYPA 910

Query: 878  MSYKPAPTIQLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLA 937
            M Y  A    L   V  +++ ++ A  + N+ LG I NAH   ADR    AM  +C+ LA
Sbjct: 911  MHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLA 970

Query: 938  KLFSIAVDFPKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDV-SFNT 997
            +L + AVDFPKTG   ++P  L+   +PDFM K D   Y+S  ++G+L+R VK+V   + 
Sbjct: 971  ELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDA 1030

Query: 998  NTIETYTREVAAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSG 1057
                  + + +A  YD  +EI GFE  + EA+  K  YD +L  L+  Y ++ E E+V+G
Sbjct: 1031 EASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTG 1090

Query: 1058 NILRVGKSFDKRTD--MEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEE----F 1100
            +I  + K   K+     E++ H+  SL+KE R  F E        D +N  EEE+     
Sbjct: 1091 HIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEE-----TIPDHENLSEEEKNILYE 1150

[Close]

BLAST of MS009042.1 vs. ExPASy TrEMBL
Match: A0A6J1CZM7 (RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015673 PE=3 SV=1)

HSP 1 Score: 2187.5 bits (5667), Expect = 0.0e+00
Identity = 1083/1103 (98.19%), Postives = 1088/1103 (98.64%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTIEIYGFRRDVT EEVKEFLENHTGDGTVS VRIAE RDENSRF FATV+F+SELAA
Sbjct: 1    MGKTIEIYGFRRDVTAEEVKEFLENHTGDGTVSAVRIAEFRDENSRFTFATVQFSSELAA 60

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWK 120
            GHVVS AAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWK
Sbjct: 61   GHVVSQAAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWK 120

Query: 121  GENCSVEFGSGVRKLFVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAPRIFK 180
            GENCSVEFGSGVRKLFVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQ APRIFK
Sbjct: 121  GENCSVEFGSGVRKLFVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQRAPRIFK 180

Query: 181  KRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQLPSF 240
            K SSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQLPSF
Sbjct: 181  KSSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQLPSF 240

Query: 241  FKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQHGYLPGP 300
            FKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFD S+KILFKINALVQHGYLPGP
Sbjct: 241  FKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDFSFKILFKINALVQHGYLPGP 300

Query: 301  LLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQLPWKPDI 360
            LLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQ WLKQQY SYYNSKQLPWKPDI
Sbjct: 301  LLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQKWLKQQYLSYYNSKQLPWKPDI 360

Query: 361  SLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRPID 420
            SLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIR ID
Sbjct: 361  SLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRSID 420

Query: 421  LSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSA 480
            LSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSA
Sbjct: 421  LSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSA 480

Query: 481  ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSD 540
            ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSD
Sbjct: 481  ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTYCFSD 540

Query: 541  GIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSMLKYKSL 600
            GIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDP SEKKLSLRKSMLKYKSL
Sbjct: 541  GIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYKSL 600

Query: 601  DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRALEVL 660
            DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQL+CILKDPSRALEVL
Sbjct: 601  DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLNCILKDPSRALEVL 660

Query: 661  ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720
            ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL
Sbjct: 661  ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720

Query: 721  DETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMV 780
            DETGTLKYGQVFVQCSVPGRSSESNFI EGKVVVAKNPCLHPGDMRVLNAVDVKALHHMV
Sbjct: 721  DETGTLKYGQVFVQCSVPGRSSESNFIPEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMV 780

Query: 781  DCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQLDHDVTI 840
            DCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPEL CIRPVKPMSYKPAPTIQLDHDVTI
Sbjct: 781  DCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELNCIRPVKPMSYKPAPTIQLDHDVTI 840

Query: 841  EEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPAN 900
            EEVQEYMANYMVNDGLGAIANAHT FADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841  EEVQEYMANYMVNDGLGAIANAHTVFADREPRKAMSAKCIKLAKLFSIAVDFPKTGVPAN 900

Query: 901  LPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPD 960
            LPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPD
Sbjct: 901  LPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKCYDPD 960

Query: 961  MEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQI 1020
            MEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQI
Sbjct: 961  MEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTDMEQI 1020

Query: 1021 SHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGRYNEGME 1080
            SHAMRSLRKEARAWFNEKGSKPRCDDDDNGDE+EEFAKASAWYHVTYHQSYWGRYNEGME
Sbjct: 1021 SHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEDEEFAKASAWYHVTYHQSYWGRYNEGME 1080

Query: 1081 RDHFLSFPWCVSDKLIQIKKKKI 1104
            RDHFLSFPWCVSDKLIQIKKKKI
Sbjct: 1081 RDHFLSFPWCVSDKLIQIKKKKI 1103

[Close]

BLAST of MS009042.1 vs. ExPASy TrEMBL
Match: A0A6J1K1Q3 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489826 PE=3 SV=1)

HSP 1 Score: 1767.3 bits (4576), Expect = 0.0e+00
Identity = 875/1113 (78.62%), Postives = 976/1113 (87.69%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGK IEIYGF  +VT +EVKEF+ENHTGDGTV  VRI++  DE +RF FATVRFTS+L  
Sbjct: 7    MGKMIEIYGFPAEVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGG 66

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQNR--------RGGVGVERMENLTLHLGSQISK 120
             +VV+ AAAE+RLW+GSSYLKAR+ +R+ R        R   G+ERMEN+ +  GS +SK
Sbjct: 67   EYVVAQAAAEKRLWFGSSYLKARKVEREIRTATAAAAARVHGGLERMENVNVQWGSLVSK 126

Query: 121  EKLSVIWKGENCSVEFGSGVRKLFVYVN---LEYKMEVWFESILRVQLRCPPDGASKFLL 180
            EK+ VIWK    SVE+G G RKL  Y++   +EYKME+ FE+IL VQLRC  D  S+  L
Sbjct: 127  EKMKVIWKEGKWSVEYGIGARKLGFYLSYEGVEYKMELCFENILGVQLRCSGDRGSELFL 186

Query: 181  IQLQGAPRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCL 240
            IQLQGAPRIFKK  SSSSS  SS          +S+G RWIRDVDFTPSSCIGQSFALCL
Sbjct: 187  IQLQGAPRIFKKTPSSSSSRLSS---------EESTGFRWIRDVDFTPSSCIGQSFALCL 246

Query: 241  ELSPGDQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKIN 300
            ELSPGDQLPSFF+TLVGY+E Y PF L  GSS SS SNLVPI+TPPQGFD+SYKILFKIN
Sbjct: 247  ELSPGDQLPSFFRTLVGYKESYAPFILHPGSSLSSISNLVPIITPPQGFDISYKILFKIN 306

Query: 301  ALVQHGYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYY 360
            AL+QHGYLPGP LD+EFFRLVD SRFRPEYIE ALEKLF+ KEC YEPQ WLKQQY S+Y
Sbjct: 307  ALLQHGYLPGPALDNEFFRLVDSSRFRPEYIEYALEKLFHFKECCYEPQKWLKQQYLSFY 366

Query: 361  NSKQLPWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFV 420
            +SKQLP KP++SLDDGLVYVHRVQITP+KVYFRGPEANLSNRVVR + DD+DNF+RVSFV
Sbjct: 367  SSKQLPCKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFV 426

Query: 421  DEELDKIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSV 480
            DEELDK+  IDLSPRTS  N  RTRVYDR+LS LRNGIVIGDKKFEFLAFSASQLRENS 
Sbjct: 427  DEELDKLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSC 486

Query: 481  WMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEV 540
            WMFASR+GLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEV
Sbjct: 487  WMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVIPDVEV 546

Query: 541  ETNNVTYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLS 600
            ETN +TYCFSDGIGKIS TLAEKVAE+CGLI+HTPSAFQIRYAGYKGVVAIDP S KKLS
Sbjct: 547  ETNKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLS 606

Query: 601  LRKSMLKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCI 660
            LRKSMLKY SLDTQ+DVL+WSKY PCFLNRQVINLLSTLGIKDRVF KKQKEAI QLD I
Sbjct: 607  LRKSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSI 666

Query: 661  LKDPSRALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIF 720
            L+DPSRALEVLELMSPGEMTS+LKE+LL YKPN+EPFLNMMLRTFRA KLLDLRTKSRIF
Sbjct: 667  LEDPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIF 726

Query: 721  VPKGRTMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLN 780
            VPKGRTMMGCLDET TL+YGQVFV CS+PGRSSESNF+ +GKVVVAKNPCLHPGD+R+L+
Sbjct: 727  VPKGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLD 786

Query: 781  AVDVKALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPA 840
            AVDVKALHHMV+CVVFPQKG+RPHPNECSGSDLDGDLYFV WDPELT I+PVKPMSY+PA
Sbjct: 787  AVDVKALHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPA 846

Query: 841  PTIQLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIA 900
            PT++LDHDVTIEEVQEY+A YMVNDGLG IANAHT FAD++P+KAM+A+CIKLAKLFSIA
Sbjct: 847  PTMRLDHDVTIEEVQEYLAKYMVNDGLGGIANAHTVFADKKPKKAMTAECIKLAKLFSIA 906

Query: 901  VDFPKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYT 960
            VDFPKTGVPAN P  LRV E+PDFMEK D+P Y S GV+GKLFR VKDVS + NTIE ++
Sbjct: 907  VDFPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTIEIFS 966

Query: 961  REVAAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGK 1020
            REVA KCYDPDME+DGFE YL+EAF++K RYD+KLGNLMDYYGI+TEPEL+SGNILR+ K
Sbjct: 967  REVATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAK 1026

Query: 1021 SFDKRTDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQ 1080
            SFDKR D+EQIS A++SLRKEAR+WFNEKGSK  CD+D   D++EE+AKASAWY VTYH 
Sbjct: 1027 SFDKRNDLEQISLAIKSLRKEARSWFNEKGSKSACDED---DKDEEYAKASAWYRVTYHP 1086

Query: 1081 SYWGRYNEGMERDHFLSFPWCVSDKLIQIKKKK 1103
             YWGRYNEGM+RDHFLSFPWCVSDKLIQIK++K
Sbjct: 1087 DYWGRYNEGMQRDHFLSFPWCVSDKLIQIKREK 1107

[Close]

BLAST of MS009042.1 vs. ExPASy TrEMBL
Match: A0A6J1FF44 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 SV=1)

HSP 1 Score: 1765.0 bits (4570), Expect = 0.0e+00
Identity = 873/1108 (78.79%), Postives = 974/1108 (87.91%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTIEIYGF   VT +EVKEF+ENHTGDGTV  VRI++  DE +RF FATV+FTS+L  
Sbjct: 7    MGKTIEIYGFPTQVTADEVKEFIENHTGDGTVLTVRISKLNDEKARFTFATVQFTSKLGG 66

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQNR---RGGVGVERMENLTLHLGSQISKEKLSV 120
             +VV+ AAAE+RLW+GSSYLKAR+ +R+ +   R    +ERMEN+ +  GS +SKE++ V
Sbjct: 67   EYVVAQAAAEKRLWFGSSYLKARKVEREIKTAARVHGELERMENVNVQWGSLVSKEEMKV 126

Query: 121  IWKGENCSVEFGSGVRKLFVYVN---LEYKMEVWFESILRVQLRCPPDGASKFLLIQLQG 180
            IWKG   SVE+G GVRKL  Y++   +EYKME+ FE+IL VQLRC  D  SK  LIQLQG
Sbjct: 127  IWKGGKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGVQLRCSVDRGSKLFLIQLQG 186

Query: 181  APRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPG 240
            APRIFKK   SSSS  SS          +S+G RWIRDVDFTPSSCIGQSFALCLELS G
Sbjct: 187  APRIFKKAPLSSSSRLSS---------EESTGFRWIRDVDFTPSSCIGQSFALCLELSHG 246

Query: 241  DQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQH 300
            DQLPSFF+TLVGY+E Y PF L+TGSS SS SNLVPI+TPPQGFD+ YKILFKINAL+QH
Sbjct: 247  DQLPSFFQTLVGYKESYAPFILQTGSSLSSISNLVPIITPPQGFDIPYKILFKINALLQH 306

Query: 301  GYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQL 360
            GYLPGP LD+EFFRLVD SRFRP+Y+E AL+KLF+ KEC YEPQ WLKQQY S+Y+SKQL
Sbjct: 307  GYLPGPALDNEFFRLVDSSRFRPDYVEYALDKLFHFKECCYEPQKWLKQQYLSFYSSKQL 366

Query: 361  PWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELD 420
            PWKP+ISLDDGLVYVHRVQITP+KVYFRGPEANLSNRVVR + DD+DNF+RVSFVDEELD
Sbjct: 367  PWKPNISLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELD 426

Query: 421  KIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFAS 480
            K+  IDLSPRTS  N  RTRVYDR+LS LRNGIVIGDKKFEFLAFSASQLRENS WMFAS
Sbjct: 427  KLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFAS 486

Query: 481  REGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNV 540
            R+GLSAADIREWMGD RQIRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI+DVEVETN +
Sbjct: 487  RKGLSAADIREWMGDLRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKI 546

Query: 541  TYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSM 600
            TYCFSDGIGKIS TLAEKVAE+CGLI+HTPSAFQIRYAGYKGVVAIDP S KKLSLRKSM
Sbjct: 547  TYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSM 606

Query: 601  LKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPS 660
            LKY SLDTQ+DVL+WSKY PCFLNRQVINLLSTLGIKDRVF KKQKEAI QLD IL+DPS
Sbjct: 607  LKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPS 666

Query: 661  RALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGR 720
            RALEVLELMSPGEMTS+LKE+LL YKPN+EPFLNMMLRTFRA KLLDLRTKSRIFVPKGR
Sbjct: 667  RALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGR 726

Query: 721  TMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVK 780
            TMMGCLDET TL+YGQVFV CS+PGRSSESNF+ +GKVVVAKNPCLHPGD+R+L+AVDVK
Sbjct: 727  TMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVK 786

Query: 781  ALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQL 840
            ALHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFV WDPELT I+PVKPMSY+PAPT+QL
Sbjct: 787  ALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMQL 846

Query: 841  DHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPK 900
            DHDVTIEEVQ Y+  YMVNDGLG IANAHT FAD++P+KAM+A+CIKLAKLFSIAVDFPK
Sbjct: 847  DHDVTIEEVQGYLVKYMVNDGLGGIANAHTVFADKKPKKAMAAECIKLAKLFSIAVDFPK 906

Query: 901  TGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAA 960
            TGVPAN P  LRV E+PDFMEK D+P Y S GV+GKLFR VKDVS + NT+E ++REVA 
Sbjct: 907  TGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVAT 966

Query: 961  KCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKR 1020
            KCYDPDME+DGFE YL+EAF+FK RYD+KLGNLMDYYGI+TEPEL+SGNILR+ KSFDKR
Sbjct: 967  KCYDPDMEVDGFEDYLSEAFEFKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKR 1026

Query: 1021 TDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGR 1080
             DMEQIS AM+SLRKEAR+WFNEKGSK   D+DDN  + EE+AKASAWY VTYH  YWGR
Sbjct: 1027 NDMEQISLAMKSLRKEARSWFNEKGSKSAYDEDDN--KNEEYAKASAWYRVTYHPDYWGR 1086

Query: 1081 YNEGMERDHFLSFPWCVSDKLIQIKKKK 1103
            YNEGM+RDHFLSFPWCVSDKLIQIK++K
Sbjct: 1087 YNEGMQRDHFLSFPWCVSDKLIQIKREK 1103

[Close]

BLAST of MS009042.1 vs. ExPASy TrEMBL
Match: A0A6J1JTB1 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111487656 PE=3 SV=1)

HSP 1 Score: 1750.3 bits (4532), Expect = 0.0e+00
Identity = 868/1107 (78.41%), Postives = 971/1107 (87.71%), Query Frame = 0


Query: 2    GKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAAG 61
            GKTIE++GFRR+V+  EVKEF+ENHTG+GTVS+VRI++ +D   R  FA V F S++AA 
Sbjct: 5    GKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAE 64

Query: 62   HVVSLAAAEERLWYGSSYLKAREADRQNRRGGVGVERMENLTLHLGSQISKEKLSVIWKG 121
            +VV  A AEE LW+G  YLKAR  +R+ R     VERME + + LGS ISKE++ VIW+G
Sbjct: 65   YVVEKAEAEEGLWFGRWYLKARGVEREMR-----VERMEKVRVQLGSVISKEEMRVIWRG 124

Query: 122  ENCSVEFGSGVRKLFVYVNL-----EYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAP 181
            E  SVE+G+G+RKL+ Y++      +YKME+ FE+IL VQLRCP + +S   LIQLQGAP
Sbjct: 125  EEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAP 184

Query: 182  RIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ 241
            RIFKK       SSSSSSS+FY KE  S+G RWIRDVDFTPSSCIGQSF+LCLE+SPGDQ
Sbjct: 185  RIFKK-----CPSSSSSSSQFYSKE--STGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQ 244

Query: 242  LPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQHGY 301
            LPSFF+TLVGY+EIYGPF L TGS+FSSTSNLVPIVTPPQ FD+ YKILFKINALVQHGY
Sbjct: 245  LPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGY 304

Query: 302  LPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQLPW 361
            LPG  LDD+FFRLVDPSRFR +YIE ALEKLF+LKEC YEPQ WLKQQY S+ +S QLPW
Sbjct: 305  LPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW 364

Query: 362  KPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKI 421
            K +ISLDD LVYVHRVQITP+KVYFRGPEANLSNRVVR++ DDIDNF+RVSFVDEELDKI
Sbjct: 365  KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI 424

Query: 422  RPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASRE 481
               DLSPRTST   ERTRVYDRILS LRNGIVIG KKFEFLAFSASQLRENS WMFASRE
Sbjct: 425  HSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 484

Query: 482  GLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNVTY 541
            GL+AADIREWMGDFR+IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVI D EVE  N+ Y
Sbjct: 485  GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKY 544

Query: 542  CFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSMLK 601
            CFSDGIGKISE LAE VAE+CGLI+HTPSAFQIRYAGYKGVVA+DP S+KKLSLRKSMLK
Sbjct: 545  CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 604

Query: 602  YKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRA 661
            Y SLDTQLDVL+WSKY PCFLNRQVINLLSTLGI+D VF K+QK+A+ QLD IL+DPS+A
Sbjct: 605  YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKA 664

Query: 662  LEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 721
            LEVLELMSPGEMTSVLK+MLL+Y P++EPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM
Sbjct: 665  LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 724

Query: 722  MGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKAL 781
            MGCLDET TL+YGQVF+ CSVPGRSSESNF+ +GKVVVAKNPCLHPGD+RVL+AVDVK L
Sbjct: 725  MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784

Query: 782  HHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQLDH 841
            HHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFVCWDPELTCIRP+KPMSY+PAPTIQLDH
Sbjct: 785  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844

Query: 842  DVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPKTG 901
            DVT+EEVQEY ANYMVNDGLG IANAHT FAD +P+KAMSA+CI+LAKLFSIAVDFPKTG
Sbjct: 845  DVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTG 904

Query: 902  VPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAAKC 961
            VPANLP  LRVHE+PDFMEK ++  Y S GVIGKLFR VKDVS + N IET+TREVA KC
Sbjct: 905  VPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKC 964

Query: 962  YDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKRTD 1021
            YDPDME+ GFE YL+EAFD+K  YD+KLGNLMDYYGI TEPELVSGNILR+GKSFDKR D
Sbjct: 965  YDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND 1024

Query: 1022 MEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGRYN 1081
            MEQIS AMRSLRKEAR WFNEK SK     ++N  E+ E+AKASAWYHVTYH ++WGRYN
Sbjct: 1025 MEQISLAMRSLRKEARGWFNEKASKSIY--NNNKGEDNEYAKASAWYHVTYHPNFWGRYN 1084

Query: 1082 EGMERDHFLSFPWCVSDKLIQIKKKKI 1104
            EGM+RDHFLSFPWCVSDKLIQIK++K+
Sbjct: 1085 EGMQRDHFLSFPWCVSDKLIQIKREKM 1097

[Close]

BLAST of MS009042.1 vs. ExPASy TrEMBL
Match: A0A6J1EB47 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111430971 PE=3 SV=1)

HSP 1 Score: 1746.5 bits (4522), Expect = 0.0e+00
Identity = 866/1109 (78.09%), Postives = 977/1109 (88.10%), Query Frame = 0


Query: 2    GKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAAG 61
            GKTIE++GF R+V+  EVKEF+ENHTG+GTVS+VRI++ + E SR   A V F S++AA 
Sbjct: 5    GKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVAAE 64

Query: 62   HVVSLAAAEERLWYGSSYLKAREADRQNRR--GGVGVERMENLTLHLGSQISKEKLSVIW 121
            +VV  A AEERLW+G  YLKAR  +R+  R      +ER+E + + LGS I K+++ VIW
Sbjct: 65   YVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRVIW 124

Query: 122  KGENCSVEFGSGVRKLFVYVNL-----EYKMEVWFESILRVQLRCPPDGASKFLLIQLQG 181
            +GE+ SVE+G+G+RKL+ Y++      +YKME+ FE+IL VQLRCP + +S   LIQLQG
Sbjct: 125  RGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQG 184

Query: 182  APRIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPG 241
            APRIFKK      SSSSSSSS+FY KE  S+G RWIRDVDFTPSSCIGQSFALC E+SPG
Sbjct: 185  APRIFKK----CPSSSSSSSSQFYSKE--STGFRWIRDVDFTPSSCIGQSFALCFEVSPG 244

Query: 242  DQLPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPPQGFDLSYKILFKINALVQH 301
            DQLPSFF+TLVGY+EIYGPF L TGS+FSSTSNLVPIVTPPQ F + YKILFKINALVQH
Sbjct: 245  DQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQH 304

Query: 302  GYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQL 361
            GYLPG  LDD+FFRLVDP+RFR +YIE ALEKLF+LKEC YEPQ WLKQQY S+ +S QL
Sbjct: 305  GYLPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQL 364

Query: 362  PWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELD 421
            PWK +ISLDD LVYVHRVQITP+KVYFRGPEANLSNRVVR++ DDIDNF+RVSFVDEELD
Sbjct: 365  PWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELD 424

Query: 422  KIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFAS 481
            KI   DLSPRTST   ERTRVYDRILS LRNGIVIG KKFEFLAFSASQLRENS WMFAS
Sbjct: 425  KIYSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAS 484

Query: 482  REGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNV 541
            REGL+AADIREWMGDFR+IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVI DVEVE  N+
Sbjct: 485  REGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNI 544

Query: 542  TYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSM 601
             YCFSDGIGKISE LAE VAE+CGLI+HTPSAFQIRYAGYKGVVA+DP S+KKLSLRKSM
Sbjct: 545  KYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSM 604

Query: 602  LKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPS 661
            LKY SLDTQLDVL+WSKY PCFLNRQVINLLSTLGI+D VF K+QK+A+ QLD IL+DPS
Sbjct: 605  LKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPS 664

Query: 662  RALEVLELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGR 721
            +ALEVLELMSPGEMTSVLK+MLL+Y P++EPFLNMMLRTFRADKLLDLRTKSRIFVP+GR
Sbjct: 665  KALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGR 724

Query: 722  TMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVK 781
            TMMGCLDET TL+YGQVF+ CSVPGRSSESNF+ +GKVVVAKNPCLHPGD+RVL+AVDVK
Sbjct: 725  TMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVK 784

Query: 782  ALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQL 841
             LHHMVDCVVFPQKG+RPHPNECSGSDLDGDLYFVCWDPELTCIRP+KPMSY+PAPTIQL
Sbjct: 785  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQL 844

Query: 842  DHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFPK 901
            DHDVTIEEVQEY ANYMVNDGLG IANAHT FAD++P+KAMSA+CI+LAKLFSIAVDFPK
Sbjct: 845  DHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPK 904

Query: 902  TGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVAA 961
            TGVPANLP  LRVHE+PDFMEK ++  Y S GVIGKLFR VKDVS + N IET+TREVAA
Sbjct: 905  TGVPANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAA 964

Query: 962  KCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDKR 1021
            KCYDPDME+ GFE YL+EAFD+K+ YD+KLGNLMDYYGI TEPELVSGNILR+GKSFDKR
Sbjct: 965  KCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKR 1024

Query: 1022 TDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWGR 1081
             DMEQIS AMRSLRKEAR WFNEKGSK     ++N DE++E+AKASAWYHVTYH ++WGR
Sbjct: 1025 NDMEQISLAMRSLRKEARGWFNEKGSKSIY--NNNKDEDDEYAKASAWYHVTYHPNFWGR 1084

Query: 1082 YNEGMERDHFLSFPWCVSDKLIQIKKKKI 1104
            YNEGM+RDHFLSFPWCVS+KLIQIK++K+
Sbjct: 1085 YNEGMQRDHFLSFPWCVSEKLIQIKREKM 1105

[Close]

BLAST of MS009042.1 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 1238.8 bits (3204), Expect = 0.0e+00
Identity = 644/1110 (58.02%), Postives = 804/1110 (72.43%), Query Frame = 0


Query: 1    MGKTIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAA 60
            MGKTI+++GF   V+ EEVK+FLE  TG GTV  +++ + +    R  +A V+FTSE   
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRV-YAIVQFTSERHT 60

Query: 61   GHVVSLAAAEERLWYGSSYLKAREADRQ-NRRGGVGVERMENLTLHLGSQISKEKLSVIW 120
              +++  AA ERL+YG SYLKA E ++    +    +  +  L +  G Q+S +K   +W
Sbjct: 61   RLIIT--AAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLW 120

Query: 121  KGENCSVEFGSGVRKL---FVYVNLEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAP 180
              ++  V FG G+RKL   F +   +Y++E+ +E+I ++ L  P   +SKFL+IQ+ GAP
Sbjct: 121  SAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAP 180

Query: 181  RIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ 240
            +IF+K     +         FY   S  S  +WIR  DFT SSCIGQS A CLEL     
Sbjct: 181  KIFEKEDQPINLLFGIMD--FY---SDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLN 240

Query: 241  LPSFFKTLVGY-EEIYGPFNLETGSSFSSTSN-LVPIVTPPQGFDLSYKILFKINALVQH 300
            +P F +    Y E     F +E+GSS+SS +N LVP+V PP GF L ++ILFK+N LVQ+
Sbjct: 241  VPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQN 300

Query: 301  GYLPGPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQL 360
              L GP LD +F+RL++  ++    I+  LEKLF+L EC YEP +WL+ +Y+ + +  +L
Sbjct: 301  ACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKL 360

Query: 361  PWKPDISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELD 420
            P  P ISLDDGLVY++RVQ+TP++VYF GPE N+SNRV+R YS  I+NF+RVSFVDE+L+
Sbjct: 361  PLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLE 420

Query: 421  KIRPIDLSPRTSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFAS 480
            K+R +DLSPR+ST    RT++YDRI S LR+GIVIGDKKFEFLAFS+SQLRENS WMFA 
Sbjct: 421  KVRSMDLSPRSSTQ--RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 480

Query: 481  REGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDVEVETNNV 540
             + ++AA IR WMGDF  IRNVAKYAARLGQSF SSR+TL V   EIEVI DVE+ +   
Sbjct: 481  IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 540

Query: 541  TYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKKLSLRKSM 600
             Y FSDGIGKIS   A KVA +CGL   +PSAFQIRY GYKGVVA+DP S KKLSLRKSM
Sbjct: 541  RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 600

Query: 601  LKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPS 660
             K++S +T+LDVLAWSKY PC++NRQ+I LLSTLG+ D VFEKKQ+E + +LD IL  P 
Sbjct: 601  SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPL 660

Query: 661  RALEVLELMSPGEMTSVLKEMLLY-YKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKG 720
             A E L LM+PGE T++LK ++L  YKP+ EPFL+MML+ FRA KLL+LRTK+RIF+  G
Sbjct: 661  EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 720

Query: 721  RTMMGCLDETGTLKYGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDV 780
            R+MMGCLDET TL+YGQV VQ S P R     FI  G VVVAKNPCLHPGD+RVL AV+V
Sbjct: 721  RSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNV 780

Query: 781  KALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVKPMSYKPAPTIQ 840
             AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL   R  +PM Y P PT  
Sbjct: 781  PALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQI 840

Query: 841  LDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLAKLFSIAVDFP 900
            LDHDVTIEEV+EY ANY+VND LG IANAHTAFAD+EP KA S  CI+LAK FS AVDFP
Sbjct: 841  LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFP 900

Query: 901  KTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDVSFNTNTIETYTREVA 960
            KTGV A +P  L V E+PDFMEK D+P YESK VIGKLFR VK+ +    +I+++T +VA
Sbjct: 901  KTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVA 960

Query: 961  AKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSGNILRVGKSFDK 1020
            +K YD DME+DGFE+Y++EAF  K  YD+KLGNLMDYYGI+TE E++SG I+R+ KSF K
Sbjct: 961  SKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTK 1020

Query: 1021 RTDMEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEEFAKASAWYHVTYHQSYWG 1080
            R D E I  A+R+LRKE  + FN            + +EE E AKASAWYHVTYH SYWG
Sbjct: 1021 RRDAESIGRAVRALRKETLSLFNA-----------SEEEENESAKASAWYHVTYHSSYWG 1080

Query: 1081 RYNEGMERDHFLSFPWCVSDKLIQIKKKKI 1104
             YNEG+ RDHFLSF WCV DKL++IKK  +
Sbjct: 1081 LYNEGLNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]

BLAST of MS009042.1 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 734.9 bits (1896), Expect = 9.2e-212
Identity = 443/1133 (39.10%), Postives = 652/1133 (57.55%), Query Frame = 0


Query: 4    TIEIYGFRRDVTEEEVKEFLENHTGDGTVSEVRIAESRDENSRFKFATVRFTSELAAGHV 63
            T++I    + +  +E+  FLE H G+ TV  + I  +RD      FA V+FT+ L     
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT-LEVKSR 70

Query: 64   VSLAAAEERLWYGSSYLKAREA-DRQNRRGGVGVERMENLTLHLGSQISKEKLSVI---W 123
              L +++ +L + +  L+  EA D    R     +R++++ L +G   S EK       W
Sbjct: 71   AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 130

Query: 124  KGENCSVEFGSGVRKLFVYVNLE-YKMEVWFESILRVQLRCPPDGASKF--LLIQLQGAP 183
             G  C +       + +V+ + + YK+EV FE I+     C    AS+    L++L+  P
Sbjct: 131  DGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGP 190

Query: 184  RIFKKRSSSSSSSSSSSSSRFYFKESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ 243
            ++FK+ +   ++   S   RF     +     WIR  DF+ S  IG S   CLE+  G  
Sbjct: 191  KVFKRVTVHIATKFKSDRYRFC---KEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGST 250

Query: 244  LPSFFKTLVGYEEIYGPFNLETGSSFSSTSNLVPIVTPP-QGFDLSYKILFKINALVQHG 303
            +   F  L  Y E         G +F+S + +VP++     G +  Y+ILF++NALV   
Sbjct: 251  MLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQ 310

Query: 304  YLP-GPLLDDEFFRLVDPSRFRPEYIERALEKLFNLKECFYEPQNWLKQQYRSYYNSKQL 363
             +      D E  +++         +   L+KL       Y+P  ++K Q +S    K++
Sbjct: 311  KISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVV--KKM 370

Query: 364  PWKPDIS----LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVD 423
               P  +     +  ++   R  +TPSK+Y  GPE   +N VV+ +++ + +F+RV+FV+
Sbjct: 371  KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424  EELDKIRPIDLSPRTST---ANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLREN 483
            E+  K+    LS  +         RT +Y+R+LS L  GI +G K+FEFLAFSASQLR N
Sbjct: 431  EDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGN 490

Query: 484  SVWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDV 543
            SVWMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E I D+
Sbjct: 491  SVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDI 550

Query: 544  EVETNNVTYCFSDGIGKISETLAEKVAERCGLINHTPSAFQIRYAGYKGVVAIDPKSEKK 603
            EV T+   YCFSDGIGKIS   A++VA++CGL +H PSAFQIRY GYKGV+A+D  S +K
Sbjct: 551  EVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRSSFRK 610

Query: 604  LSLRKSMLKYKSLDTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLD 663
            LSLR SMLK+ S +  L+V  W++ +PCFLNR++I LLSTLGI+D +FE  Q   +  L 
Sbjct: 611  LSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLG 670

Query: 664  CILKDPSRALEVLELMSPGEMTSVLKEMLLY-YKPNKEPFLNMMLRTFRADKLLDLRTKS 723
             +L+D   AL VL+ +S     ++L +MLL  Y P+ EP+L+MMLR     +L +L+++ 
Sbjct: 671  NMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRC 730

Query: 724  RIFVPKGRTMMGCLDETGTLKYGQVFVQCSVP------------GRSSESNFIAEGKVVV 783
            RI VPKGR ++GC+DE G L+YGQV+V+ ++              +  E   +  GKVVV
Sbjct: 731  RILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVV 790

Query: 784  AKNPCLHPGDMRVLNAVDVKALHH--MVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWD 843
             KNPCLHPGD+RVL+A+          +DC++FPQKG+RPHPNECSG DLDGD +FV WD
Sbjct: 791  TKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWD 850

Query: 844  PELTCIRPVKPMSYKPAPTIQLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPR 903
             ++       PM Y  +    +DHDVT+EE+ ++  +YM++D LG I+ AH   ADR+P 
Sbjct: 851  EKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPE 910

Query: 904  KAMSAKCIKLAKLFSIAVDFPKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLF 963
            KA S KC++LA L S AVDF KTG PA +P  L+  EFPDF+E+ ++P Y S+ V GKL+
Sbjct: 911  KARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLY 970

Query: 964  RSVKDVSFNTNTIETYTREVAAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYG 1023
            R+VK  S      E  + +  A  YD  +E  GFE ++  A   +  Y  KL +LM YYG
Sbjct: 971  RAVKS-SLAQRKPEAESEDTVA--YDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1030

Query: 1024 IRTEPELVSGNILRVGKSFDKRTD------MEQISHAMRSLRKEARAWFNEKGSKPRCDD 1083
               E E+++G IL+  + +  R +       ++I+ +++ L KEA  WF +      C+ 
Sbjct: 1031 AANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKS-----CE- 1090

Query: 1084 DDNGDEEEEFAKASAWYHVTYHQSYWGRYNEGMERDHFLSFPWCVSDKLIQIK 1100
                DE+++   ASAWY+VTY+       N   E+  FLSFPW V D L+ IK
Sbjct: 1091 ----DEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIK 1114

[Close]

BLAST of MS009042.1 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 561.6 bits (1446), Expect = 1.4e-159
Identity = 379/1068 (35.49%), Postives = 562/1068 (52.62%), Query Frame = 0


Query: 98   RMENLTLHLGSQISKEKLSVIWKGENC-----------------SVEFGSGVRKLFVYVN 157
            ++  +TL +G+ +S++   V W+ E                   S  F      +   +N
Sbjct: 131  KLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVIN 190

Query: 158  LEYKMEVWFESILRVQLRCPPDGASKFLLIQLQGAPRIFKKRSSSSSSSSSSSSSRFYFK 217
             +YK+E+    I  V+      G    L++QL  +PR++ + +      +          
Sbjct: 191  CDYKLELLVRDIQTVRQYKTLHGF--VLILQLASSPRVWYRTADDDIYDTVPG------- 250

Query: 218  ESQSSGSRWIRDVDFTPSSCIGQSFALCLELSPGDQ------LPSFFKTLVGYEEIYGPF 277
            +       WIR  DFT    IG+  +  + +SP  +      L  F    V  E +  P 
Sbjct: 251  DLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPP 310

Query: 278  NLETGSSFSS-TSNLVPIVTPPQGFDLSYKILFKINALVQHGYLPGPLLDDEFFRLVDPS 337
             +     F    S+    +   +G  +S++I+F +N+++  G      L + FF L+   
Sbjct: 311  RIRNEPCFGEPVSDHFFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLL--- 370

Query: 338  RFRPEYIERA-LEKLFNLKECFYEPQNWLKQQYRSYYNSKQLPWKPDISLDDGLVYVHRV 397
            R +P+ +  A L+ L   K   ++    LK        + +L    + S D  +  + R+
Sbjct: 371  RNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRRL 430

Query: 398  QITPSKVYFRGPEANLSNRVVRQYSDDIDNFIRVSFVDEELDKIRPIDLS--------PR 457
             ITP++ Y   PE  LSNRV+R+Y    + F+RV+F+DE +  I    LS          
Sbjct: 431  VITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDL 490

Query: 458  TSTANGERTRVYDRILSTLRNGIVIGDKKFEFLAFSASQLRENSVWMFASREGLSAADIR 517
            TS++  ++T V+ R+ S L +G  +  +K+ FLAFSA+QLR+ S W FA       +DI+
Sbjct: 491  TSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIK 550

Query: 518  EWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVITDV-EVETNNVTYCFSDGIG 577
             WMG F+  +NVAK AAR+G  F S+  T+ V  HE++  T+V ++E N   Y FSDGIG
Sbjct: 551  TWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVD--TEVPDIERNG--YVFSDGIG 610

Query: 578  KISETLAEKVAERCGL-INHTPSAFQIRYAGYKGVVAIDPKSEK--KLSLRKSMLKYKSL 637
             I+  LA++V E+  L ++++P A+QIRYAG+KGVVA  P      +L+LR SM K+ S 
Sbjct: 611  TITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSK 670

Query: 638  DTQLDVLAWSKYLPCFLNRQVINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRALEVL 697
             T L++ +W+++ P FLNRQ+I LLS LG+ D +F   Q+  +Y+L+ IL D   A EVL
Sbjct: 671  HTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL 730

Query: 698  ELMSPGEMTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 757
                  +  +    +   +KP  EP L  ML + R  +L  LR KSRIFV  GR +MGCL
Sbjct: 731  TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCL 790

Query: 758  DETGTLKYGQVFVQCSVP----------GRSSESNF---IAEGKVVVAKNPCLHPGDMRV 817
            DE G L++GQ F+Q S P           R  E+     + +G V +AKNPCLHPGD+R+
Sbjct: 791  DEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRI 850

Query: 818  LNAVDVKALHHMVDCVVFPQKGQRPHPNECSGSDLDGDLYFVCWDPELTCIRPVK----P 877
            L AVDV  LHHM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L  I P +     
Sbjct: 851  LEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL--IPPNRKSYPA 910

Query: 878  MSYKPAPTIQLDHDVTIEEVQEYMANYMVNDGLGAIANAHTAFADREPRKAMSAKCIKLA 937
            M Y  A    L   V  +++ ++ A  + N+ LG I NAH   ADR    AM  +C+ LA
Sbjct: 911  MHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLA 970

Query: 938  KLFSIAVDFPKTGVPANLPPFLRVHEFPDFMEKLDRPAYESKGVIGKLFRSVKDV-SFNT 997
            +L + AVDFPKTG   ++P  L+   +PDFM K D   Y+S  ++G+L+R VK+V   + 
Sbjct: 971  ELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDA 1030

Query: 998  NTIETYTREVAAKCYDPDMEIDGFEKYLNEAFDFKTRYDYKLGNLMDYYGIRTEPELVSG 1057
                  + + +A  YD  +EI GFE  + EA+  K  YD +L  L+  Y ++ E E+V+G
Sbjct: 1031 EASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTG 1090

Query: 1058 NILRVGKSFDKRTD--MEQISHAMRSLRKEARAWFNEKGSKPRCDDDDNGDEEEE----F 1100
            +I  + K   K+     E++ H+  SL+KE R  F E        D +N  EEE+     
Sbjct: 1091 HIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEE-----TIPDHENLSEEEKNILYE 1150

[Close]

BLAST of MS009042.1 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-27
Identity = 134/462 (29.00%), Postives = 204/462 (44.16%), Query Frame = 0


Query: 529 VETNNVTYCFSDGIGKISETLA---------------EKVAERCGLINHTPSAFQIRYAG 588
           ++ N      SDG G ISE LA               E + E C         F++ Y G
Sbjct: 389 LDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDG 448

Query: 589 Y--KGVVAIDPK-SEKKLSLRKSMLKYKSLDTQLDVLAWSKYLPCF----------LNRQ 648
           Y  KG   ++ K   + + +R SM+K  S D  L   +    L             L++ 
Sbjct: 449 YAVKGTFLLNKKLCPRTVQVRPSMIKV-SKDPSLSNFSTFNALEVVTTSNPPKRTKLSKN 508

Query: 649 VINLLSTLGIKDRVFEKKQKEAIYQLDCILKDPSRALEVLELMSPGEMTSV-LKEMLLYY 708
           ++ LLS  GI +  F       + +   I  +   AL     ++ GEM      +M+L  
Sbjct: 509 LVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNA--ALNYGEMDDQNAAQMILVG 568

Query: 709 KPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETGTLKYGQVFVQCSVPG 768
            P  EP L   L      +  DL+   ++ V +   +MG +D TG LK  +V V      
Sbjct: 569 IPLDEPHLKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCV------ 628

Query: 769 RSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMVD----CVVFPQKGQRPHPN 828
              ES  I+ G+V+V +NP LH GD+ +L A  VKAL   V      V FPQKG R   +
Sbjct: 629 -ILESGQIS-GEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGD 688

Query: 829 ECSGSDLDGDLYFVCWDPE-LTCIRPVKP-MSYKP--------APTIQLDHDVTIEEVQE 888
           E +G D DGD+YF+  +PE L   +P +P +S  P        AP+ QL  +   EE+ E
Sbjct: 689 EIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPS-QLSPEELEEELFE 748

Query: 889 YM--ANYMVNDGLGAIANAHTAFADR---------EPRKAMSAKCIKLAKLFSIAVDFPK 937
               A +  ++ +G  A++     DR         E +  M  K ++L  ++  A+D PK
Sbjct: 749 MFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPK 808

[Close]

BLAST of MS009042.1 vs. TAIR 10
Match: AT2G19920.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-26
Identity = 150/592 (25.34%), Postives = 251/592 (42.40%), Query Frame = 0


Query: 436 YDRILSTLRNGIVIGDKKFEFLAF----SASQLRENS---VWMFASREG----------- 495
           Y +     +NGI++G ++++F  F     A + + NS   V  +  R G           
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327

Query: 496 -LSAADIREWMGDFRQIRNV---AKYAARLGQSFGSSRKTLCVEEHEIEV--ITDVE--- 555
            LS   I E    F  +  +   A Y AR       ++K L V+  EI V  I D+    
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMTEITVMQIDDIHCHD 387

Query: 556 ------VETNNVTYCFSDGIGKISETLA---------------EKVAERCGLINHTPSAF 615
                 ++ N      SDG G ISE LA                 +   C  +   P   
Sbjct: 388 QSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTC--VQEPPLLI 447

Query: 616 QIRY----AGYKGVVAIDPK-SEKKLSLRKSMLK-YK-------SLDTQLDVLAWSK-YL 675
           QIR     +  KG+  ++     + + +R SM+K YK       S    L+V+  S    
Sbjct: 448 QIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPK 507

Query: 676 PCFLNRQVINLLSTLGIKDRVF------EKKQKEAIYQLDCILKDPSRALEVLELMSPGE 735
              L++ ++ LLS  G+ +  F        ++K+ I+      K  +     L   +  +
Sbjct: 508 RAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIF-----FKVRAAGKAALHYGNMDD 567

Query: 736 MTSVLKEMLLYYKPNKEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETGTLK 795
             ++  +M++   P  EP+L   L      +  DL+   ++ + +   +MG +D TG LK
Sbjct: 568 KNAL--QMIMAGIPLDEPYLKHYLSKLLKLEKDDLKA-GKLPIDESYYLMGTVDPTGELK 627

Query: 796 YGQVFVQCSVPGRSSESNFIAEGKVVVAKNPCLHPGDMRVLNAVDVKALHHMVD----CV 855
             +V            S       V+V +NP LH GD+ +L A  VK+L   V      V
Sbjct: 628 EDEV------------SGLAKSQDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGV 687

Query: 856 VFPQKGQRPHPNECSGSDLDGDLYFVCWDPE-LTCIRPVKP-MSYKPAPTI---QLDHDV 915
            FPQKG R   +E +G D DGD+YF+  +P+ L   +P +P +S  P   I   +   ++
Sbjct: 688 FFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSEL 747

Query: 916 TIEEVQEYMANYMVNDG------LGAIANAHTAFADR---------EPRKAMSAKCIKLA 936
           + E+++E +    +  G      +G  A++  A  DR         + +  M  K +KL 
Sbjct: 748 SPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLT 807

The following BLAST results are available for this feature:

BLAST of MS009042.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146462.1	0.0e+00	98.19	probable RNA-dependent RNA polymerase 1 [Momordica charantia]	[more]
XP_038875555.1	0.0e+00	79.77	probable RNA-dependent RNA polymerase 1 [Benincasa hispida]	[more]
KAG6579193.1	0.0e+00	78.74	RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022994004.1	0.0e+00	78.62	probable RNA-dependent RNA polymerase 1 [Cucurbita maxima]	[more]
XP_022938807.1	0.0e+00	78.79	probable RNA-dependent RNA polymerase 1 [Cucurbita moschata]	[more]

BLAST of MS009042.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQV2	0.0e+00	58.02	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
Q0DXS3	6.3e-266	62.23	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
O82504	1.3e-210	39.10	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1	[more]
Q7XM31	3.0e-199	38.55	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9SG02	2.0e-158	35.49	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1	[more]

BLAST of MS009042.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZM7	0.0e+00	98.19	RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015673 PE=3...	[more]
A0A6J1K1Q3	0.0e+00	78.62	RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489826 PE=3 SV...	[more]
A0A6J1FF44	0.0e+00	78.79	RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 ...	[more]
A0A6J1JTB1	0.0e+00	78.41	RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111487656 PE=3 SV...	[more]
A0A6J1EB47	0.0e+00	78.09	RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111430971 PE=3 ...	[more]

BLAST of MS009042.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	58.02	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	9.2e-212	39.10	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	1.4e-159	35.49	RNA-dependent RNA polymerase 6	[more]
AT2G19930.1	4.8e-27	29.00	RNA-dependent RNA polymerase family protein	[more]
AT2G19920.1	1.8e-26	25.34	RNA-dependent RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 374..935 e-value: 1.8E-184 score: 614.6
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 2..1102
None	No IPR available	PANTHER	PTHR23079:SF44	RNA-DEPENDENT RNA POLYMERASE	coord: 2..1102
None	No IPR available	CDD	cd00590	RRM_SF	coord: 5..60 e-value: 4.53906E-5 score: 40.7513
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 3..87 score: 8.995756
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009042	MS009042	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009042.1-cds	MS009042.1-cds-scaffold385:425286..425798	CDS
MS009042.1-cds	MS009042.1-cds-scaffold385:426653..428511	CDS
MS009042.1-cds	MS009042.1-cds-scaffold385:428750..428900	CDS
MS009042.1-cds	MS009042.1-cds-scaffold385:429591..430376	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009042.1	MS009042.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity