MS009041.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009041.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U3 small nucleolar RNA-associated protein 18 homolog
Location	scaffold385: 413956 .. 415638 (-)
Sequence length	1683
RNA-Seq Expression	MS009041.1
Synteny	MS009041.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTATTATCTCAAAATGTCACTGCAATCAGAAGCATCGAGAAGATTCCAAAAAGAGATGTAAATGCTAGTGATGTGGAAGACTCTGGTGCAGGTACTACTAGGGCAAAGAAGAGAAAGAAAGAACGTAAAGAAGAGGATCAACAAGTAGTAATTGAACAACAAATGGAAATGAAGAAGCTGGAAAATTTTCTTTTTGGATCTCTCTATTCTCCTGTTGAATTTGGGAAAGATGAAGAGGAAAAGGGTTTCACCGCTGATGAAAAATCTCCTGCTTTATATATCATGGATCGCTCTGCGAATAGTTCCCTTTCTGCTTATGAAGATGATTTTCGGCTTGTAGACGAAGACGAGAGTACTAATAAGGAGGAACCTCAGCAGAGAAAGCCAGTTTGGGTAGACGAGGAAGAGGAGAAGGCCACGGTTAATATTAGTAATGTCAGCAGACTGAGAAAATTGAGGAAGGAAGAAGATGAGAGTTCCATTTCAGGTTCGGAGTACGTGACGAGACTAAGGGCTCAGCACGCAAAGCTAAACCCAGGCACAGAGTGGGCTCAACTCGATTCACAATCCAAGGGTGGCAGTGAGGATGATGCTCTATCTTCAGATGATGAAAATGGAGTTGTATTGGCTGATGGCTATGAGAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTTGTTGTGAAAAGCGGTGCTAAATTGTTGCCCGGTCTTCTTGAGTACTCAAGACTTGTAGATGCAAATGCAGAGGAACCGTCCAATGGTCCAATTAATTCAGTTCAGTTTCATCGCAATGCTCAGTTACTTCTAGCTACTGGGTTGGATCGGAGGCTTAGATTTTTTCAGATTGACGGTAAACGGAACACGAAAATTCAGAGCATTTTTCTTGAAGACTGCCCTGTACGAAAGGCATCTTTTTTGCCTGATGGGTCTCAGGTAATTATAGCGGGGAGGAGAAAGTTCTTCTATAGCCTTGATCTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTTGGTAGAGAGGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTTGCATTCATAGGTAATGAAGGTTATATCCTGTTGGTGTCAACAAAAACAAAGGAGCTCATTGGGACGCTTAAGATGAATGGAAGTGTCCGTTCTTTAGCGTTTGCTGATGATGGAAGACAGTTATTGAGCTCCGGTGGTGATGGGCAAGTCTACCACTGGGATTTGAGAACGAGAACATGCATCCACAAGGCTGTCGATGAAGGTTGCATCAATGGCACTGCGCTTTGTACCTCTCCTAATGGATCATTGTTTGCAGCTGGTTCTGATAGTGGCATTGTTAACATCTACAACAGACAAGAATTCTTAGGGGGCAAGAAGAAGCCATTAAAAACCATTGAGAATCTAACCACCAGAGTGGATTTTCTCAAATTTAATCATGATACTCAAATGTTGGCCATCTGTTCAAGAATGAAGAAGAGTAGTTTGAAATTGATTCACATTCCTTCTTTCACTATATTTTCAAACTGGCCGCCACCAAAGAAGAATCTTCAATACCCTTCCTGTTTGGATTTCAGTCCTGAAGGTGGTTATATGGCTGTAGGAAATGCTGCTGGAAAGGTTTTATTGTACAAGCTACATCATTACCATCATGCT

mRNA sequence

ATGAGTTTATTATCTCAAAATGTCACTGCAATCAGAAGCATCGAGAAGATTCCAAAAAGAGATGTAAATGCTAGTGATGTGGAAGACTCTGGTGCAGGTACTACTAGGGCAAAGAAGAGAAAGAAAGAACGTAAAGAAGAGGATCAACAAGTAGTAATTGAACAACAAATGGAAATGAAGAAGCTGGAAAATTTTCTTTTTGGATCTCTCTATTCTCCTGTTGAATTTGGGAAAGATGAAGAGGAAAAGGGTTTCACCGCTGATGAAAAATCTCCTGCTTTATATATCATGGATCGCTCTGCGAATAGTTCCCTTTCTGCTTATGAAGATGATTTTCGGCTTGTAGACGAAGACGAGAGTACTAATAAGGAGGAACCTCAGCAGAGAAAGCCAGTTTGGGTAGACGAGGAAGAGGAGAAGGCCACGGTTAATATTAGTAATGTCAGCAGACTGAGAAAATTGAGGAAGGAAGAAGATGAGAGTTCCATTTCAGGTTCGGAGTACGTGACGAGACTAAGGGCTCAGCACGCAAAGCTAAACCCAGGCACAGAGTGGGCTCAACTCGATTCACAATCCAAGGGTGGCAGTGAGGATGATGCTCTATCTTCAGATGATGAAAATGGAGTTGTATTGGCTGATGGCTATGAGAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTTGTTGTGAAAAGCGGTGCTAAATTGTTGCCCGGTCTTCTTGAGTACTCAAGACTTGTAGATGCAAATGCAGAGGAACCGTCCAATGGTCCAATTAATTCAGTTCAGTTTCATCGCAATGCTCAGTTACTTCTAGCTACTGGGTTGGATCGGAGGCTTAGATTTTTTCAGATTGACGGTAAACGGAACACGAAAATTCAGAGCATTTTTCTTGAAGACTGCCCTGTACGAAAGGCATCTTTTTTGCCTGATGGGTCTCAGGTAATTATAGCGGGGAGGAGAAAGTTCTTCTATAGCCTTGATCTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTTGGTAGAGAGGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTTGCATTCATAGGTAATGAAGGTTATATCCTGTTGGTGTCAACAAAAACAAAGGAGCTCATTGGGACGCTTAAGATGAATGGAAGTGTCCGTTCTTTAGCGTTTGCTGATGATGGAAGACAGTTATTGAGCTCCGGTGGTGATGGGCAAGTCTACCACTGGGATTTGAGAACGAGAACATGCATCCACAAGGCTGTCGATGAAGGTTGCATCAATGGCACTGCGCTTTGTACCTCTCCTAATGGATCATTGTTTGCAGCTGGTTCTGATAGTGGCATTGTTAACATCTACAACAGACAAGAATTCTTAGGGGGCAAGAAGAAGCCATTAAAAACCATTGAGAATCTAACCACCAGAGTGGATTTTCTCAAATTTAATCATGATACTCAAATGTTGGCCATCTGTTCAAGAATGAAGAAGAGTAGTTTGAAATTGATTCACATTCCTTCTTTCACTATATTTTCAAACTGGCCGCCACCAAAGAAGAATCTTCAATACCCTTCCTGTTTGGATTTCAGTCCTGAAGGTGGTTATATGGCTGTAGGAAATGCTGCTGGAAAGGTTTTATTGTACAAGCTACATCATTACCATCATGCT

Coding sequence (CDS)

ATGAGTTTATTATCTCAAAATGTCACTGCAATCAGAAGCATCGAGAAGATTCCAAAAAGAGATGTAAATGCTAGTGATGTGGAAGACTCTGGTGCAGGTACTACTAGGGCAAAGAAGAGAAAGAAAGAACGTAAAGAAGAGGATCAACAAGTAGTAATTGAACAACAAATGGAAATGAAGAAGCTGGAAAATTTTCTTTTTGGATCTCTCTATTCTCCTGTTGAATTTGGGAAAGATGAAGAGGAAAAGGGTTTCACCGCTGATGAAAAATCTCCTGCTTTATATATCATGGATCGCTCTGCGAATAGTTCCCTTTCTGCTTATGAAGATGATTTTCGGCTTGTAGACGAAGACGAGAGTACTAATAAGGAGGAACCTCAGCAGAGAAAGCCAGTTTGGGTAGACGAGGAAGAGGAGAAGGCCACGGTTAATATTAGTAATGTCAGCAGACTGAGAAAATTGAGGAAGGAAGAAGATGAGAGTTCCATTTCAGGTTCGGAGTACGTGACGAGACTAAGGGCTCAGCACGCAAAGCTAAACCCAGGCACAGAGTGGGCTCAACTCGATTCACAATCCAAGGGTGGCAGTGAGGATGATGCTCTATCTTCAGATGATGAAAATGGAGTTGTATTGGCTGATGGCTATGAGAATGTTGATTCTATTGATGATATCCTTCGAACGAGTGAGAATCTTGTTGTGAAAAGCGGTGCTAAATTGTTGCCCGGTCTTCTTGAGTACTCAAGACTTGTAGATGCAAATGCAGAGGAACCGTCCAATGGTCCAATTAATTCAGTTCAGTTTCATCGCAATGCTCAGTTACTTCTAGCTACTGGGTTGGATCGGAGGCTTAGATTTTTTCAGATTGACGGTAAACGGAACACGAAAATTCAGAGCATTTTTCTTGAAGACTGCCCTGTACGAAAGGCATCTTTTTTGCCTGATGGGTCTCAGGTAATTATAGCGGGGAGGAGAAAGTTCTTCTATAGCCTTGATCTAGTGAAAGCAAAAGTAGATAAAATTGGCCCTCTTGTTGGTAGAGAGGAGAAAAGCCTTGAAGTTTTTGAAGTTTCTCCTGATTCTAGCACAGTTGCATTCATAGGTAATGAAGGTTATATCCTGTTGGTGTCAACAAAAACAAAGGAGCTCATTGGGACGCTTAAGATGAATGGAAGTGTCCGTTCTTTAGCGTTTGCTGATGATGGAAGACAGTTATTGAGCTCCGGTGGTGATGGGCAAGTCTACCACTGGGATTTGAGAACGAGAACATGCATCCACAAGGCTGTCGATGAAGGTTGCATCAATGGCACTGCGCTTTGTACCTCTCCTAATGGATCATTGTTTGCAGCTGGTTCTGATAGTGGCATTGTTAACATCTACAACAGACAAGAATTCTTAGGGGGCAAGAAGAAGCCATTAAAAACCATTGAGAATCTAACCACCAGAGTGGATTTTCTCAAATTTAATCATGATACTCAAATGTTGGCCATCTGTTCAAGAATGAAGAAGAGTAGTTTGAAATTGATTCACATTCCTTCTTTCACTATATTTTCAAACTGGCCGCCACCAAAGAAGAATCTTCAATACCCTTCCTGTTTGGATTTCAGTCCTGAAGGTGGTTATATGGCTGTAGGAAATGCTGCTGGAAAGGTTTTATTGTACAAGCTACATCATTACCATCATGCT

Protein sequence

MSLLSQNVTAIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYEDDFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRAQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA

Homology

[Close]

BLAST of MS009041.1 vs. NCBI nr
Match: XP_022146398.1 (U3 small nucleolar RNA-associated protein 18 homolog [Momordica charantia])

HSP 1 Score: 1090.1 bits (2818), Expect = 0.0e+00
Identity = 559/561 (99.64%), Postives = 559/561 (99.64%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMK 60
           MSLLSQNVTAIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMK
Sbjct: 1   MSLLSQNVTAIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMK 60

Query: 61  KLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYEDDFRLVDEDES 120
           KLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSA SSLSAYEDDFRLVDEDES
Sbjct: 61  KLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSAXSSLSAYEDDFRLVDEDES 120

Query: 121 TNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRAQHAKLN 180
           TNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRAQHAKLN
Sbjct: 121 TNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRAQHAKLN 180

Query: 181 PGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVKSGAKLL 240
           PGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVK GAKLL
Sbjct: 181 PGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVKRGAKLL 240

Query: 241 PGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIF 300
           PGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIF
Sbjct: 241 PGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIF 300

Query: 301 LEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDS 360
           LEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDS
Sbjct: 301 LEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDS 360

Query: 361 STVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRT 420
           STVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRT
Sbjct: 361 STVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRT 420

Query: 421 RTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPLKTIENLTT 480
           RTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPLKTIENLTT
Sbjct: 421 RTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPLKTIENLTT 480

Query: 481 RVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGY 540
           RVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGY
Sbjct: 481 RVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGY 540

Query: 541 MAVGNAAGKVLLYKLHHYHHA 562
           MAVGNAAGKVLLYKLHHYHHA
Sbjct: 541 MAVGNAAGKVLLYKLHHYHHA 561

[Close]

BLAST of MS009041.1 vs. NCBI nr
Match: XP_022963504.1 (U3 small nucleolar RNA-associated protein 18 homolog [Cucurbita moschata])

HSP 1 Score: 976.1 bits (2522), Expect = 1.3e-280
Identity = 500/572 (87.41%), Postives = 534/572 (93.36%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKI----------PKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQNV  I SIEK+          P R V+ASDVE+SG  TTRAKKRKKE K+ED+Q
Sbjct: 1   MSLISQNVAVISSIEKVTEDNTVVSSSPLRKVDASDVENSGVDTTRAKKRKKEHKKEDEQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED 120
           +V EQQ EM+KLENFLFGSLYSPVEFGKDEE+ GF+A+EK  ALYIMDRSAN+SLS YE+
Sbjct: 61  IVKEQQKEMEKLENFLFGSLYSPVEFGKDEEKNGFSAEEKDSALYIMDRSANNSLSVYEN 120

Query: 121 DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVT 180
           D  L+  DES+NKEE QQRKPVWVDEEEEKA+VNI+NVSRLRKLRKEEDE SISGSEYV+
Sbjct: 121 DVGLL--DESSNKEEAQQRKPVWVDEEEEKASVNITNVSRLRKLRKEEDEKSISGSEYVS 180

Query: 181 RLRAQHAKLNPGTEWAQLDSQSKGGS-EDDALSSDDENGVVLADGYENVDSIDDILRTSE 240
           RLRAQHAKLNPGTEWAQLD+QS+GGS +DD L+SDDEN V LADGY+NVDSIDDILRT+E
Sbjct: 181 RLRAQHAKLNPGTEWAQLDAQSRGGSDDDDDLTSDDENAVALADGYDNVDSIDDILRTNE 240

Query: 241 NLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQID 300
           NLV KSGAKLLPGLLEYSRLVDANA+EPSNGPI+SVQFHRNAQLLLATGLDR+LRFFQID
Sbjct: 241 NLVAKSGAKLLPGLLEYSRLVDANAQEPSNGPIHSVQFHRNAQLLLATGLDRKLRFFQID 300

Query: 301 GKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEK 360
           GKRNTKIQSIFLEDCP+RKASFLPDGSQVII+GRRKFFYSLDLVKAKVDKIGPLVGREEK
Sbjct: 301 GKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKAKVDKIGPLVGREEK 360

Query: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGG 420
           SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNG+VRSLAFADDGRQLLSSGG
Sbjct: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGTVRSLAFADDGRQLLSSGG 420

Query: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKK 480
           DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNG+LFAAGSDSGIVNIYNRQEFLGGKK
Sbjct: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKK 480

Query: 481 KPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYP 540
           KPLK IENLTT+VDFLKFNHD Q+LAICSRMKKSSLKLIH+PSFTIFSNWPPPKKNLQYP
Sbjct: 481 KPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTIFSNWPPPKKNLQYP 540

Query: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           SCLDFSPEGGYMAVGNAAGKVLLYKLHHY HA
Sbjct: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYQHA 570

[Close]

BLAST of MS009041.1 vs. NCBI nr
Match: XP_038888553.1 (U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 971.5 bits (2510), Expect = 3.2e-279
Identity = 494/571 (86.51%), Postives = 529/571 (92.64%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKI----------PKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQNV  I S+E +          P R+V+ASDVE+SG  TTR KKRKKE K+ED+Q
Sbjct: 1   MSLISQNVAVISSMENVTGENIVGLSSPLRNVDASDVENSGLDTTRVKKRKKEHKKEDEQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED 120
           +V EQQ EMKKLE FLFGSLYSPVEFGKDEE+ GF++DEK PALYIMDRSAN+SLSAYE 
Sbjct: 61  LVKEQQKEMKKLETFLFGSLYSPVEFGKDEEQNGFSSDEKVPALYIMDRSANNSLSAYEG 120

Query: 121 DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVT 180
           DF L+   ESTN++EPQQRKP WVDEEEEKATVNI+NVSRLRKLRKEEDE+SISGSEYV 
Sbjct: 121 DFGLI--HESTNEKEPQQRKPAWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSEYVL 180

Query: 181 RLRAQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSEN 240
           RLRAQHAKLNPGTEWAQLD+QS+GGS+DD  SSDDE+ V LADG++NVDSIDDILRTSEN
Sbjct: 181 RLRAQHAKLNPGTEWAQLDAQSRGGSDDDDQSSDDESAVTLADGHDNVDSIDDILRTSEN 240

Query: 241 LVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDG 300
           L VK GAKLLPGLLEYSRLVDANAEEPSNGPINSVQFH NAQLLLATGLDR+LRFFQIDG
Sbjct: 241 LAVKRGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHHNAQLLLATGLDRKLRFFQIDG 300

Query: 301 KRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKS 360
           KRN KIQSIFLEDCP++KASFLP+GSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGR+EKS
Sbjct: 301 KRNMKIQSIFLEDCPIQKASFLPNGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGRDEKS 360

Query: 361 LEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD 420
           LEVFEVSPDSST+AFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD
Sbjct: 361 LEVFEVSPDSSTIAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD 420

Query: 421 GQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKK 480
           GQVYHWDLRTRTCIHK VDEGCINGTALCTSPNG+LFAAGSDSGIVNIYNRQEFLGGKKK
Sbjct: 421 GQVYHWDLRTRTCIHKGVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKK 480

Query: 481 PLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPS 540
           PL+ IENLTT+VDFLKFNHD Q+LAICSRMKKSSLKLIH+PSFTIFSNWPPPKKNLQYPS
Sbjct: 481 PLRAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTIFSNWPPPKKNLQYPS 540

Query: 541 CLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           CLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA
Sbjct: 541 CLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 569

[Close]

BLAST of MS009041.1 vs. NCBI nr
Match: XP_038901788.1 (U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038901789.1 U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038901790.1 U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038901791.1 U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038901792.1 U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038901794.1 U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038901795.1 U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038901796.1 U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida])

HSP 1 Score: 971.1 bits (2509), Expect = 4.2e-279
Identity = 500/571 (87.57%), Postives = 526/571 (92.12%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKIPKRDV----------NASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQNV  I SIEK+   D           +ASDVE+S   TTR KKRKKE K+ED+Q
Sbjct: 1   MSLISQNVAVISSIEKVTGEDTVGLSSLSRNRDASDVENSVLDTTRGKKRKKEHKKEDEQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED 120
           +V EQQ EMKKLENFLFGSLYSPVEFGKDEE  GF+++EK PALYIMDRSAN+SLSAYE+
Sbjct: 61  LVKEQQKEMKKLENFLFGSLYSPVEFGKDEERNGFSSEEKVPALYIMDRSANNSLSAYEE 120

Query: 121 DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVT 180
           DF L+  DES NKEE QQRKPVWVDEEEEKATVNI+NVSRLRKLRKE DE+ ISGSEYV+
Sbjct: 121 DFELL--DESMNKEELQQRKPVWVDEEEEKATVNITNVSRLRKLRKEGDENLISGSEYVS 180

Query: 181 RLRAQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSEN 240
           RLRAQHAKLNPGTEWAQLD+ S+  S+DD LSSDDEN V LADGY NVDSIDDILRTSEN
Sbjct: 181 RLRAQHAKLNPGTEWAQLDAPSRADSDDDDLSSDDENAVALADGYANVDSIDDILRTSEN 240

Query: 241 LVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDG 300
           LVVKSGAKL+PGLL YSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDR+LRFFQIDG
Sbjct: 241 LVVKSGAKLMPGLLGYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRKLRFFQIDG 300

Query: 301 KRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKS 360
           KRNTKIQSIFLEDCP+RKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKS
Sbjct: 301 KRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKS 360

Query: 361 LEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD 420
           LEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD
Sbjct: 361 LEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD 420

Query: 421 GQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKK 480
           GQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNG+LFAAGSDSGIVNIYNRQEFLGGKKK
Sbjct: 421 GQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKK 480

Query: 481 PLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPS 540
           PLK IENLTT+VDFLKFNHD Q+LAICSRMKKSSLKLIH+PSFTIFSNWPPPKKNLQYPS
Sbjct: 481 PLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTIFSNWPPPKKNLQYPS 540

Query: 541 CLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           CLDFSPEGGYMAVGNAAGKVLLYKLHHY HA
Sbjct: 541 CLDFSPEGGYMAVGNAAGKVLLYKLHHYQHA 569

[Close]

BLAST of MS009041.1 vs. NCBI nr
Match: XP_023511721.1 (U3 small nucleolar RNA-associated protein 18 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 970.7 bits (2508), Expect = 5.4e-279
Identity = 498/572 (87.06%), Postives = 534/572 (93.36%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKIP----------KRDVNASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQNV  I S EK+            R V+ASDVE+SGA TTRAKKRKKE K+ED+Q
Sbjct: 1   MSLISQNVAVISSTEKVNGDNTVGSSSLLRKVDASDVENSGADTTRAKKRKKEHKKEDEQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED 120
           +V EQQ EM+KLENFLFGSLYSPVEFGKDEE+  F+A+EK+PALYIMDRSAN+SLS YE+
Sbjct: 61  IVKEQQKEMEKLENFLFGSLYSPVEFGKDEEKNDFSAEEKAPALYIMDRSANNSLSVYEN 120

Query: 121 DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVT 180
           D  L+  DES++KEE QQRKPVWVDEEEEKA+VNI+NVSRLRKLRKEEDE SISGSEYV+
Sbjct: 121 DVGLL--DESSSKEEAQQRKPVWVDEEEEKASVNITNVSRLRKLRKEEDEKSISGSEYVS 180

Query: 181 RLRAQHAKLNPGTEWAQLDSQSKGGS-EDDALSSDDENGVVLADGYENVDSIDDILRTSE 240
           RLRAQHAKLNPGTEWAQLD+QS+GGS +DD LSSDDEN V LADGY+NVDSIDDILRT+E
Sbjct: 181 RLRAQHAKLNPGTEWAQLDAQSRGGSDDDDDLSSDDENAVALADGYDNVDSIDDILRTNE 240

Query: 241 NLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQID 300
           NLV KSGAKLLPGLLEYSRLVDANA+EPSNGPI+SVQFHRNAQLLLATGLDR+LRFFQID
Sbjct: 241 NLVAKSGAKLLPGLLEYSRLVDANAQEPSNGPIHSVQFHRNAQLLLATGLDRKLRFFQID 300

Query: 301 GKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEK 360
           GKRNTKIQSIFLEDCP+RKASFLPDGSQVII+GRRKFFYSLDLVKAKVDKIGPLVGREEK
Sbjct: 301 GKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKAKVDKIGPLVGREEK 360

Query: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGG 420
           SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNG+VRSLAFADDG+QLLSSGG
Sbjct: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGTVRSLAFADDGQQLLSSGG 420

Query: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKK 480
           DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNG+LFAAGSDSGIVNIYNRQEFLGGKK
Sbjct: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKK 480

Query: 481 KPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYP 540
           KPLK IENLTT+VDFLKFNHD Q+LAICSRMKKSSLKLIH+PSFTIFSNWPPPKKNLQYP
Sbjct: 481 KPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTIFSNWPPPKKNLQYP 540

Query: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           SCLDFSPEGGYMAVGNAAGKVLLYKLHHY HA
Sbjct: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYQHA 570

[Close]

BLAST of MS009041.1 vs. ExPASy Swiss-Prot
Match: Q9FMU5 (U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1)

HSP 1 Score: 677.9 bits (1748), Expect = 9.5e-194
Identity = 363/569 (63.80%), Postives = 440/569 (77.33%), Query Frame = 0


Query: 4   LSQNVTAIRSI--EKIPKRDVNASDVEDSGA--GTTRAKKRKKERKEEDQQVVIEQQMEM 63
           LSQN    + I  E++ K+  +  D E+ G+    TR K+RK E+  E Q++   + +EM
Sbjct: 3   LSQNAPKSKGIKREELKKQYEDVEDEEEIGSDDDLTRGKRRKTEK--EKQKLEESELVEM 62

Query: 64  KKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYEDDFRLVDEDE 123
           KKLEN +FGSLYSPV FGK+EEE G        AL+ +DRSA   +  YEDD    D+DE
Sbjct: 63  KKLENLIFGSLYSPVTFGKEEEEDG-------SALFHVDRSAVRQIPDYEDD---GDDDE 122

Query: 124 STNKEEPQQ------RKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLR 183
             + EE  Q       +  W DEEE++  V+I++V+RLRKLRKEE+E  ISGSEY+ RLR
Sbjct: 123 ELSDEENGQVVAIRKGEAAWEDEEEKQINVDIASVNRLRKLRKEENEGLISGSEYIARLR 182

Query: 184 AQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVV 243
           A HAKLNPGT+WA+ DSQ   G      SSDD++     DG      +DDILRT+E+LVV
Sbjct: 183 AHHAKLNPGTDWARPDSQIVDGE-----SSDDDD---TQDG-----GVDDILRTNEDLVV 242

Query: 244 KS-GAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKR 303
           KS G KL  G LEYS+LVDANA +PSNGPINSV FH+NAQLLL  GLDRRLRFFQIDGKR
Sbjct: 243 KSRGNKLCAGRLEYSKLVDANAADPSNGPINSVHFHQNAQLLLTAGLDRRLRFFQIDGKR 302

Query: 304 NTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLE 363
           NTKIQSIFLEDCP+RKA+FLP+GSQVI++GRRKFFYS DL KAK DKIGPLVGREEKSLE
Sbjct: 303 NTKIQSIFLEDCPIRKAAFLPNGSQVIVSGRRKFFYSFDLEKAKFDKIGPLVGREEKSLE 362

Query: 364 VFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQ 423
            FEVS DS+T+AF+GNEGYILLVSTKTKELIGTLKMNGSVRSLAF++DG+ LLSSGGDGQ
Sbjct: 363 YFEVSQDSNTIAFVGNEGYILLVSTKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQ 422

Query: 424 VYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPL 483
           VY WDLRT  C++K VDEG   GT+LC+S NG+LFA+G+D GIVNIY + EF+GGK+KP+
Sbjct: 423 VYVWDLRTMKCLYKGVDEGSTCGTSLCSSLNGALFASGTDRGIVNIYKKSEFVGGKRKPI 482

Query: 484 KTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCL 543
           KT++NLT+++DF+KFNHD Q+LAI S M K+S+KL+H+PS T+FSNWPPP   + YP CL
Sbjct: 483 KTVDNLTSKIDFMKFNHDAQILAIVSTMNKNSVKLVHVPSLTVFSNWPPPNSTMHYPRCL 542

Query: 544 DFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           DFSP  G+MA+GNAAGKVLLYKLHHY +A
Sbjct: 543 DFSPGSGFMAMGNAAGKVLLYKLHHYQNA 546

[Close]

BLAST of MS009041.1 vs. ExPASy Swiss-Prot
Match: Q9Y5J1 (U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=UTP18 PE=1 SV=3)

HSP 1 Score: 301.2 bits (770), Expect = 2.4e-80
Identity = 193/529 (36.48%), Postives = 291/529 (55.01%), Query Frame = 0


Query: 36  RAKKRKKERKEEDQQVVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALY 95
           R ++R + R EED+  V       + LE  +FG +        + +E       + P + 
Sbjct: 71  RLRQRNRLRLEEDKPAV------ERCLEELVFGDV--------ENDEDALLRRLRGPRVQ 130

Query: 96  IMDRSANSSLSAYEDDFRLVDEDESTNKEEPQQRKPVWVDEE-EEKATVNISNVSRLRKL 155
             + S +S +            +       P Q+KPVWVDEE E++  V++ N    + +
Sbjct: 131 EHEDSGDSEV------------ENEAKGNFPPQKKPVWVDEEDEDEEMVDMMNNRFRKDM 190

Query: 156 RKEEDESSISGSEYVTRLRA--QHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLA 215
            K   ES +S      RL+   QHA +     WA+  ++ K  S+D+  S +DE      
Sbjct: 191 MKNASESKLSKDNLKKRLKEEFQHA-MGGVPAWAE-TTKRKTSSDDE--SEEDE------ 250

Query: 216 DGYENVDSIDDILRTSENLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQ 275
                    DD+L+ + N  + +   L  G+L+      ANAE P+   I+SVQFH  AQ
Sbjct: 251 ---------DDLLQRTGNF-ISTSTSLPRGILKMKNCQHANAERPTVARISSVQFHPGAQ 310

Query: 276 LLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAG-RRKFFYSLD 335
           +++  GLD  +  FQ+DGK N KIQSI+LE  P+ KA F  +G +V+      K  Y  D
Sbjct: 311 IVMVAGLDNAVSLFQVDGKTNPKIQSIYLERFPIFKACFSANGEEVLATSTHSKVLYVYD 370

Query: 336 LVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGS 395
           ++  K+  +  + G +EK +  FEVSPD S +   G  GY+ L++ KTKELIG++K+NG 
Sbjct: 371 MLAGKLIPVHQVRGLKEKIVRSFEVSPDGSFLLINGIAGYLHLLAMKTKELIGSMKINGR 430

Query: 396 VRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGS 455
           V +  F+ D +++ +S GDG+VY WD+ +R C+++ VDEG + G ++ TS NG   A GS
Sbjct: 431 VAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRFVDEGSLYGLSIATSRNGQYVACGS 490

Query: 456 DSGIVNIYNRQEFL-GGKKKPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHI 515
           + G+VNIYN+   L     KP+K I NL T V  L FN  T++LAI S   K +++L+H+
Sbjct: 491 NCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLTFNPTTEILAIASEKMKEAVRLVHL 550

Query: 516 PSFTIFSNWPPPK-KNLQYPSCLDFSPEGGYMAVGNAAGKVLLYKLHHY 559
           PS T+FSN+P  K KN+ +   +DFSP  GY A+GN  GK L+Y+LHHY
Sbjct: 551 PSCTVFSNFPVIKNKNISHVHTMDFSPRSGYFALGNEKGKALMYRLHHY 553

[Close]

BLAST of MS009041.1 vs. ExPASy Swiss-Prot
Match: Q5SSI6 (U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Utp18 PE=1 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-78
Identity = 192/557 (34.47%), Postives = 310/557 (55.66%), Query Frame = 0


Query: 10  AIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMKK--LENFLF 69
           A RS ++    +  A+    S A    A + ++ R  +  ++ +E      +  LE  +F
Sbjct: 34  AARSSQRTQPAEPRAAPSAGSAAA---AAEEEESRLRQRNRLTLEDDKPAAERCLEQLVF 93

Query: 70  GSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYEDDFRLVDEDESTNKEEPQ 129
           G +       +D+E+          AL    RS+   L    D+  +  E+E+ +    +
Sbjct: 94  GDV-------EDDED----------ALLQRLRSSRGQLHGSSDESEV--ENEAKDIFSQK 153

Query: 130 QRKPVWVDE-EEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRA--QHAKLNPGTE 189
           +++PVWVDE +E++  V++SN    + + K   ES +S  +   RL+   QHA +    +
Sbjct: 154 KKQPVWVDEDDEDEEIVDMSNNRFRKDIMKNASESKLSKDKLQKRLKEEFQHA-MGGVPD 213

Query: 190 WAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVKSGAKLLPGLL 249
           WA+  S+ +  S+D+  S +DE               DD+L+ + N  + +   L  G+L
Sbjct: 214 WAEAGSKRRTSSDDE--SEEDE---------------DDLLQRTGNF-ISTSTSLPRGIL 273

Query: 250 EYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDC 309
           +      ANAE P+   I+SVQFH  AQ+++ +G+D  +  FQ+DGK N KIQSI+LE  
Sbjct: 274 KMKNCRPANAERPTTARISSVQFHPGAQVVMVSGVDNAISLFQVDGKTNPKIQSIYLEKF 333

Query: 310 PVRKASFLPDGSQVIIAG-RRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTV 369
           P+ KA F  +G +V+      K  Y  D++  K+  +  + G +EK+++ FEVSPD S +
Sbjct: 334 PIFKACFSANGEEVLATSMHSKVLYVYDMLAGKLIPVHQVRGLKEKTVKQFEVSPDGSFL 393

Query: 370 AFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTC 429
              G  G+  L+S KTKELIG++K+NG + +  F+ D +++ +   +G+VY WD+ +R C
Sbjct: 394 LISGIAGFSHLLSMKTKELIGSMKINGRIAASTFSSDSKRIYTYSENGEVYVWDVNSRKC 453

Query: 430 IHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFL-GGKKKPLKTIENLTTRV 489
           +++ +DEG + G ++  S NG   A GS SG+VNIYN+   L     KP+K I NL T V
Sbjct: 454 MNRFLDEGSLCGLSIAASKNGQYVACGSKSGVVNIYNQDSCLQQTNPKPIKAIMNLVTGV 513

Query: 490 DFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKN-LQYPSCLDFSPEGGYM 549
             L FN  T++LA+ SR  K +++L+H+PS T+FSN+P  KK+ L     +DFSP GGY 
Sbjct: 514 TSLAFNPTTEILAVASRKMKEAVRLVHLPSCTVFSNFPVFKKSTLSRVQTMDFSPRGGYF 549

Query: 550 AVGNAAGKVLLYKLHHY 559
           A+GN  G+ L+Y+LHHY
Sbjct: 574 ALGNEKGRALMYRLHHY 549

[Close]

BLAST of MS009041.1 vs. ExPASy Swiss-Prot
Match: P78750 (Probable U3 small nucleolar RNA-associated protein 18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC29A3.06 PE=2 SV=3)

HSP 1 Score: 280.0 bits (715), Expect = 5.8e-74
Identity = 176/533 (33.02%), Postives = 276/533 (51.78%), Query Frame = 0


Query: 53  IEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED-- 112
           +E+  E  +LEN +FG++ +   F   E E       ++P L   + +    L   ED  
Sbjct: 1   MEKDTEELELENAVFGNINNFSSFLDKENETFDVMMNEAPELSEDNDAQEDELEKLEDAE 60

Query: 113 ----------------------DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNV 172
                                     V EDE  + E P     +W D ++E+  +++ + 
Sbjct: 61  LFMFDTGSADGAKDSVPLDIIAGDNTVKEDEEASNEIPS----IWEDSDDERLMISLQDH 120

Query: 173 SRLRKLRKEEDESSISGSEYVTRLRAQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENG 232
           SRLRKLR+ EDE  ++G +Y  RLR Q  ++ P  EWA+    ++   E +ALS   E  
Sbjct: 121 SRLRKLRQYEDEDMVNGLQYARRLRTQFERVYPVPEWAKKQDVTEEEDEFNALS---EKS 180

Query: 233 VVLADGYENVDSIDDILRTSENLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFH 292
           V+         S+  + ++S + + +S   L PG +   RL DAN + PS+  I  +  H
Sbjct: 181 VI-------PKSLKSLFKSSVSYINQSSKLLAPGTINIKRLKDANFQAPSHSGIRCMSIH 240

Query: 293 RNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFY 352
               LLL  G DR LR +Q+DGK N  + S+ L    ++ A F PDG +VI AGRRK+ Y
Sbjct: 241 PYFPLLLTCGFDRTLRIYQLDGKVNPLVTSLHLRSSALQTALFHPDGKRVIAAGRRKYMY 300

Query: 353 SLDLVKAKVDKIGPLVGRE--EKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTL 412
             DL  A+V K+  + G+E  + S+E F V P    +A  G  G+I L+   T +   + 
Sbjct: 301 IWDLESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSF 360

Query: 413 KMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSL 472
           K+ G +  + F  DG ++L      +V+H+++  R+ + +   +  ++ T  C  P+   
Sbjct: 361 KIEGVLSDVLFTSDGSEMLVLSYGAEVWHFNVEQRSVVRRWQVQDGVSTTHFCLDPSNKY 420

Query: 473 FAAGSDSGIVNIYNRQ-EFLGGKKKPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSL 532
            A GS SGIVNIY+ Q        KP+ T++N+T  ++ + F+ D+Q+LAI SR KK +L
Sbjct: 421 LAIGSKSGIVNIYDLQTSNADAAPKPVTTLDNITFSINSMSFSQDSQVLAIASRGKKDTL 480

Query: 533 KLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGYMAVGNAAGKVLLYKLHHY 559
           +L+H+PSF++F NWP     L   +CL F  +GG + VGN AG+V L+KL HY
Sbjct: 481 RLVHVPSFSVFRNWPTSATPLGRVTCLAFG-KGGELCVGNEAGRVGLWKLAHY 518

[Close]

BLAST of MS009041.1 vs. ExPASy Swiss-Prot
Match: P40362 (U3 small nucleolar RNA-associated protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP18 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.0e-55
Identity = 178/557 (31.96%), Postives = 279/557 (50.09%), Query Frame = 0


Query: 54  EQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSAN-SSLSAYEDDF 113
           EQ+M+++  E+   GS     E  +DE + G      +  L+ +D   N  S    ED  
Sbjct: 48  EQEMDVEDQED--EGSESDNSE--EDEAQNGELDHVNNDQLFFVDDGGNEDSQDKNEDTM 107

Query: 114 RLVDEDESTNKE-EPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTR 173
            + DED+S++ +      +  W+D ++EK  V I   ++ +KLR   +ES I+G  Y+ R
Sbjct: 108 DVDDEDDSSSDDYSEDSEEAAWIDSDDEKIKVPILVTNKTKKLRTSYNESKINGVHYINR 167

Query: 174 LRAQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENL 233
           LR+Q  K+ P  +W   +S S+   E+D    +  N V+  D    ++++  IL T+ N 
Sbjct: 168 LRSQFEKIYPRPKWVDDESDSELDDEEDD-EEEGSNNVINGD----INALTKILSTTYNY 227

Query: 234 V-VKSGAKLL-PGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQID 293
               S +KLL P  L+  RL DANA  PS+  I S+ FH +  LLL  G D+ LR + ID
Sbjct: 228 KDTLSNSKLLPPKKLDIVRLKDANASHPSHSAIQSLSFHPSKPLLLTGGYDKTLRIYHID 287

Query: 294 GKRNTKIQSIFLEDCPVRKASFLPDGS-----QVIIAGRRKFFYSLDL--------VKAK 353
           GK N  + S+ L   P++  +F    S      +  AGRR++ +S DL          AK
Sbjct: 288 GKTNHLVTSLHLVGSPIQTCTFYTSLSNQNQQNIFTAGRRRYMHSWDLSLENLTHSQTAK 347

Query: 354 VDKIGPLVGRE--EKSLEVFEVS--PDSST------VAFIGNEGYI-LLVSTKTKELIGT 413
           ++K   L G E  ++S E F+V+   +S T      V   GN G+I +L ST    L+G 
Sbjct: 348 IEKFSRLYGHESTQRSFENFKVAHLQNSQTNSVHGIVLLQGNNGWINILHSTSGLWLMG- 407

Query: 414 LKMNGSV-------RSLAFADDGRQLLSSGGDGQVYHWDL-RTRTCIHKAVDEG------ 473
            K+ G +       + ++       L++    G+V+ +DL +    I +  D+G      
Sbjct: 408 CKIEGVITDFCIDYQPISRGKFRTILIAVNAYGEVWEFDLNKNGHVIRRWKDQGGVGITK 467

Query: 474 -CINGTALCTSP--------NGSLFAAGSDSGIVNIYNRQEFL-GGKKKPLKTIENLTTR 533
             + G    T P             A GS+SG VN+Y+R   +      P+  ++ LTT 
Sbjct: 468 IQVGGGTTTTCPALQISKIKQNRWLAVGSESGFVNLYDRNNAMTSSTPTPVAALDQLTTT 527

Query: 534 VDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGYM 559
           +  L+F+ D Q+L + SR  K +L+L+H+PS ++FSNWP     L   + + FSP GG +
Sbjct: 528 ISNLQFSPDGQILCMASRAVKDALRLVHLPSCSVFSNWPTSGTPLGKVTSVAFSPSGGLL 587

[Close]

BLAST of MS009041.1 vs. ExPASy TrEMBL
Match: A0A6J1CYH1 (U3 small nucleolar RNA-associated protein 18 homolog OS=Momordica charantia OX=3673 GN=LOC111015623 PE=4 SV=1)

HSP 1 Score: 1090.1 bits (2818), Expect = 0.0e+00
Identity = 559/561 (99.64%), Postives = 559/561 (99.64%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMK 60
           MSLLSQNVTAIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMK
Sbjct: 1   MSLLSQNVTAIRSIEKIPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQVVIEQQMEMK 60

Query: 61  KLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYEDDFRLVDEDES 120
           KLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSA SSLSAYEDDFRLVDEDES
Sbjct: 61  KLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSAXSSLSAYEDDFRLVDEDES 120

Query: 121 TNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRAQHAKLN 180
           TNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRAQHAKLN
Sbjct: 121 TNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLRAQHAKLN 180

Query: 181 PGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVKSGAKLL 240
           PGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVK GAKLL
Sbjct: 181 PGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVVKRGAKLL 240

Query: 241 PGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIF 300
           PGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIF
Sbjct: 241 PGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIF 300

Query: 301 LEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDS 360
           LEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDS
Sbjct: 301 LEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDS 360

Query: 361 STVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRT 420
           STVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRT
Sbjct: 361 STVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRT 420

Query: 421 RTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPLKTIENLTT 480
           RTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPLKTIENLTT
Sbjct: 421 RTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPLKTIENLTT 480

Query: 481 RVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGY 540
           RVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGY
Sbjct: 481 RVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCLDFSPEGGY 540

Query: 541 MAVGNAAGKVLLYKLHHYHHA 562
           MAVGNAAGKVLLYKLHHYHHA
Sbjct: 541 MAVGNAAGKVLLYKLHHYHHA 561

[Close]

BLAST of MS009041.1 vs. ExPASy TrEMBL
Match: A0A6J1HKC7 (U3 small nucleolar RNA-associated protein 18 homolog OS=Cucurbita moschata OX=3662 GN=LOC111463814 PE=4 SV=1)

HSP 1 Score: 976.1 bits (2522), Expect = 6.2e-281
Identity = 500/572 (87.41%), Postives = 534/572 (93.36%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKI----------PKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQNV  I SIEK+          P R V+ASDVE+SG  TTRAKKRKKE K+ED+Q
Sbjct: 1   MSLISQNVAVISSIEKVTEDNTVVSSSPLRKVDASDVENSGVDTTRAKKRKKEHKKEDEQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED 120
           +V EQQ EM+KLENFLFGSLYSPVEFGKDEE+ GF+A+EK  ALYIMDRSAN+SLS YE+
Sbjct: 61  IVKEQQKEMEKLENFLFGSLYSPVEFGKDEEKNGFSAEEKDSALYIMDRSANNSLSVYEN 120

Query: 121 DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVT 180
           D  L+  DES+NKEE QQRKPVWVDEEEEKA+VNI+NVSRLRKLRKEEDE SISGSEYV+
Sbjct: 121 DVGLL--DESSNKEEAQQRKPVWVDEEEEKASVNITNVSRLRKLRKEEDEKSISGSEYVS 180

Query: 181 RLRAQHAKLNPGTEWAQLDSQSKGGS-EDDALSSDDENGVVLADGYENVDSIDDILRTSE 240
           RLRAQHAKLNPGTEWAQLD+QS+GGS +DD L+SDDEN V LADGY+NVDSIDDILRT+E
Sbjct: 181 RLRAQHAKLNPGTEWAQLDAQSRGGSDDDDDLTSDDENAVALADGYDNVDSIDDILRTNE 240

Query: 241 NLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQID 300
           NLV KSGAKLLPGLLEYSRLVDANA+EPSNGPI+SVQFHRNAQLLLATGLDR+LRFFQID
Sbjct: 241 NLVAKSGAKLLPGLLEYSRLVDANAQEPSNGPIHSVQFHRNAQLLLATGLDRKLRFFQID 300

Query: 301 GKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEK 360
           GKRNTKIQSIFLEDCP+RKASFLPDGSQVII+GRRKFFYSLDLVKAKVDKIGPLVGREEK
Sbjct: 301 GKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKAKVDKIGPLVGREEK 360

Query: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGG 420
           SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNG+VRSLAFADDGRQLLSSGG
Sbjct: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGTVRSLAFADDGRQLLSSGG 420

Query: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKK 480
           DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNG+LFAAGSDSGIVNIYNRQEFLGGKK
Sbjct: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKK 480

Query: 481 KPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYP 540
           KPLK IENLTT+VDFLKFNHD Q+LAICSRMKKSSLKLIH+PSFTIFSNWPPPKKNLQYP
Sbjct: 481 KPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTIFSNWPPPKKNLQYP 540

Query: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           SCLDFSPEGGYMAVGNAAGKVLLYKLHHY HA
Sbjct: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYQHA 570

[Close]

BLAST of MS009041.1 vs. ExPASy TrEMBL
Match: A0A1S3C7I9 (U3 small nucleolar RNA-associated protein 18 homolog OS=Cucumis melo OX=3656 GN=LOC103497366 PE=4 SV=1)

HSP 1 Score: 969.5 bits (2505), Expect = 5.8e-279
Identity = 494/571 (86.51%), Postives = 529/571 (92.64%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEK----------IPKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQNV  I SIEK           P R+ +AS+V+ SG  T+RAKKRKKE ++ED+Q
Sbjct: 1   MSLISQNVAVISSIEKGTEENTLGPSSPLRNADASEVDKSGLDTSRAKKRKKEHRKEDEQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED 120
           +V EQQ EM KLENFLFGSLYSPVEFGKDEE+ GF ++EK PALYIMDRSA++SLSAYED
Sbjct: 61  LVQEQQKEMMKLENFLFGSLYSPVEFGKDEEQNGFNSEEKIPALYIMDRSADNSLSAYED 120

Query: 121 DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVT 180
           D+R++  DESTNKEE QQRKPVWVDEEEEKATVNI+NVSRLRKLRKEEDE+SISGS YV+
Sbjct: 121 DYRVL--DESTNKEEHQQRKPVWVDEEEEKATVNITNVSRLRKLRKEEDENSISGSVYVS 180

Query: 181 RLRAQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSEN 240
           RLRAQHAKLNPGTEWAQLD+QS+G S+DD + SDDEN V LA GY+NVDSIDDILRTSEN
Sbjct: 181 RLRAQHAKLNPGTEWAQLDAQSRGDSDDDDILSDDENAVALAGGYDNVDSIDDILRTSEN 240

Query: 241 LVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDG 300
           LVVKSG KL+PGLL YSRLVDANAEEPSNGPINSVQFHRN+QLLLATGLDR+LRFFQIDG
Sbjct: 241 LVVKSGGKLMPGLLGYSRLVDANAEEPSNGPINSVQFHRNSQLLLATGLDRKLRFFQIDG 300

Query: 301 KRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKS 360
           KRNTKIQSIFLEDCP+RKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKS
Sbjct: 301 KRNTKIQSIFLEDCPIRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKS 360

Query: 361 LEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD 420
           LE FEVSPDSST+AFIGNEGYILLVS KTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD
Sbjct: 361 LEAFEVSPDSSTIAFIGNEGYILLVSIKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGD 420

Query: 421 GQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKK 480
           GQ+YHWDLRTRTCIHKAVDEGCINGTALCTSPNG+LFAAGSDSGIVNIYNRQEFLGGKKK
Sbjct: 421 GQIYHWDLRTRTCIHKAVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKKK 480

Query: 481 PLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPS 540
           PLK IENLTT+VDFLKFNHD Q+LAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPS
Sbjct: 481 PLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPS 540

Query: 541 CLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           CLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA
Sbjct: 541 CLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 569

[Close]

BLAST of MS009041.1 vs. ExPASy TrEMBL
Match: A0A6J1HWX2 (U3 small nucleolar RNA-associated protein 18 homolog OS=Cucurbita maxima OX=3661 GN=LOC111466993 PE=4 SV=1)

HSP 1 Score: 965.3 bits (2494), Expect = 1.1e-277
Identity = 495/572 (86.54%), Postives = 531/572 (92.83%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKIP----------KRDVNASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQNV  I S E +            R V+ASDVE+SG  TTR+KKRKKE K+ED+Q
Sbjct: 1   MSLISQNVAVISSTENVNGDNTVGSSSLLRKVDASDVENSGVDTTRSKKRKKEHKKEDEQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYED 120
           +V EQQ EM+KLENFLFGSLYSPVEFGKDEE+  F+A+EK+PALYIMDRSAN+SLS YE+
Sbjct: 61  IVKEQQKEMEKLENFLFGSLYSPVEFGKDEEKNDFSAEEKAPALYIMDRSANNSLSVYEN 120

Query: 121 DFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVT 180
           D  L+  DES++KEE QQRKPVWVDEEEEKA+VNI+NVSRLRKLRKEEDE SISGSEYV+
Sbjct: 121 DVGLL--DESSSKEEAQQRKPVWVDEEEEKASVNITNVSRLRKLRKEEDEKSISGSEYVS 180

Query: 181 RLRAQHAKLNPGTEWAQLDSQSKGGS-EDDALSSDDENGVVLADGYENVDSIDDILRTSE 240
           RLRAQHAKLNPGTEWAQLD+QS+ GS +DD LSSDDEN V LADGY+NVDSIDDILRT+E
Sbjct: 181 RLRAQHAKLNPGTEWAQLDAQSRSGSDDDDDLSSDDENAVALADGYDNVDSIDDILRTNE 240

Query: 241 NLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQID 300
           NLV KSGAKLLPGLLEYSRLVDANA+EPSNGPI+SVQFHRNAQLLLATGLDR+LRFFQID
Sbjct: 241 NLVAKSGAKLLPGLLEYSRLVDANAQEPSNGPIHSVQFHRNAQLLLATGLDRKLRFFQID 300

Query: 301 GKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEK 360
           GKRNTKIQSIFLEDCP+RKASFLPDGSQVII+GRRKFFYSLDLVKAKVDKIGPLVGREEK
Sbjct: 301 GKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKAKVDKIGPLVGREEK 360

Query: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGG 420
           SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNG+VRSLAFADDGRQLLSSGG
Sbjct: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGTVRSLAFADDGRQLLSSGG 420

Query: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKK 480
           DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNG+LFAAGSDSGIVNIYNRQEFLGGKK
Sbjct: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGALFAAGSDSGIVNIYNRQEFLGGKK 480

Query: 481 KPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYP 540
           KPLK IENLTT+VDFLKFNHD Q+LAICSRMKKSSLKLIH+PSFTIFSNWPPPKKNLQYP
Sbjct: 481 KPLKAIENLTTKVDFLKFNHDAQILAICSRMKKSSLKLIHVPSFTIFSNWPPPKKNLQYP 540

Query: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           SCLDFSPEGGYMAVGNAAGKVLLYKLHHY HA
Sbjct: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYQHA 570

[Close]

BLAST of MS009041.1 vs. ExPASy TrEMBL
Match: A0A6J1ET16 (U3 small nucleolar RNA-associated protein 18 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437464 PE=4 SV=1)

HSP 1 Score: 950.7 bits (2456), Expect = 2.8e-273
Identity = 488/572 (85.31%), Postives = 525/572 (91.78%), Query Frame = 0


Query: 1   MSLLSQNVTAIRSIEKI----------PKRDVNASDVEDSGAGTTRAKKRKKERKEEDQQ 60
           MSL+SQ+V AI ++EK+          P R+++ASDVE SGA TTR KKRKKE K+ED Q
Sbjct: 1   MSLISQSVAAISNLEKVTGETIVGSSSPLRNLDASDVEMSGADTTRPKKRKKEHKKEDAQ 60

Query: 61  VVIEQQMEMKKLENFLFGSLYSPVEFGKDEEEKGFTADEK-SPALYIMDRSANSSLSAYE 120
           +V EQQ EMK LENFLFGSLYSPVEFGK EE  G + +EK +PALYIMDRSANSSLSAYE
Sbjct: 61  LVKEQQQEMKNLENFLFGSLYSPVEFGKHEEVNGLSGEEKEAPALYIMDRSANSSLSAYE 120

Query: 121 DDFRLVDEDESTNKEEPQQRKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYV 180
            DF L+  DES N+EEPQQRKPVW+DEEEEKATVNI+NVSRLRKLRKEEDE SISGSEYV
Sbjct: 121 GDFGLL--DESVNEEEPQQRKPVWIDEEEEKATVNITNVSRLRKLRKEEDEKSISGSEYV 180

Query: 181 TRLRAQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSE 240
           +RLRAQHAKLNP TEWAQLD Q++GGS+DD LSSDDEN VV+ADGY++VDSIDDILRTS+
Sbjct: 181 SRLRAQHAKLNPSTEWAQLDVQTRGGSDDDDLSSDDENAVVMADGYDDVDSIDDILRTSD 240

Query: 241 NLVVKSGAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQID 300
           NLV KSG KLLPGLLEYSRLVDANAEEPSNGPI+SVQFHRNAQLLLATGLDRRLRFFQID
Sbjct: 241 NLVEKSGGKLLPGLLEYSRLVDANAEEPSNGPIHSVQFHRNAQLLLATGLDRRLRFFQID 300

Query: 301 GKRNTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEK 360
           GKRNTKIQSIFLEDCP+RKASFLPDGSQVII+GRR+FFYS DLVKAKVDKIGPLVGREEK
Sbjct: 301 GKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRRFFYSFDLVKAKVDKIGPLVGREEK 360

Query: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGG 420
           SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNG+VRSLAF D+GRQLLSSGG
Sbjct: 361 SLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGTVRSLAFTDNGRQLLSSGG 420

Query: 421 DGQVYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKK 480
           DGQVYHWDLRTRTCIHK VDEGCINGTAL TSPNG+LFAAGSDSGIVNIYNR+EFLGGKK
Sbjct: 421 DGQVYHWDLRTRTCIHKGVDEGCINGTALGTSPNGALFAAGSDSGIVNIYNREEFLGGKK 480

Query: 481 KPLKTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYP 540
           KPLK IENLTT+V+FLKFNHD Q+LAICSRMKKSSLKLIH+PSFT FSNWPPPKKNLQYP
Sbjct: 481 KPLKAIENLTTKVEFLKFNHDAQILAICSRMKKSSLKLIHVPSFTTFSNWPPPKKNLQYP 540

Query: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           SCLDFSPEGGYMAVGNAAGKVLLYKLHHY HA
Sbjct: 541 SCLDFSPEGGYMAVGNAAGKVLLYKLHHYRHA 570

[Close]

BLAST of MS009041.1 vs. TAIR 10
Match: AT5G14050.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 677.9 bits (1748), Expect = 6.8e-195
Identity = 363/569 (63.80%), Postives = 440/569 (77.33%), Query Frame = 0


Query: 4   LSQNVTAIRSI--EKIPKRDVNASDVEDSGA--GTTRAKKRKKERKEEDQQVVIEQQMEM 63
           LSQN    + I  E++ K+  +  D E+ G+    TR K+RK E+  E Q++   + +EM
Sbjct: 3   LSQNAPKSKGIKREELKKQYEDVEDEEEIGSDDDLTRGKRRKTEK--EKQKLEESELVEM 62

Query: 64  KKLENFLFGSLYSPVEFGKDEEEKGFTADEKSPALYIMDRSANSSLSAYEDDFRLVDEDE 123
           KKLEN +FGSLYSPV FGK+EEE G        AL+ +DRSA   +  YEDD    D+DE
Sbjct: 63  KKLENLIFGSLYSPVTFGKEEEEDG-------SALFHVDRSAVRQIPDYEDD---GDDDE 122

Query: 124 STNKEEPQQ------RKPVWVDEEEEKATVNISNVSRLRKLRKEEDESSISGSEYVTRLR 183
             + EE  Q       +  W DEEE++  V+I++V+RLRKLRKEE+E  ISGSEY+ RLR
Sbjct: 123 ELSDEENGQVVAIRKGEAAWEDEEEKQINVDIASVNRLRKLRKEENEGLISGSEYIARLR 182

Query: 184 AQHAKLNPGTEWAQLDSQSKGGSEDDALSSDDENGVVLADGYENVDSIDDILRTSENLVV 243
           A HAKLNPGT+WA+ DSQ   G      SSDD++     DG      +DDILRT+E+LVV
Sbjct: 183 AHHAKLNPGTDWARPDSQIVDGE-----SSDDDD---TQDG-----GVDDILRTNEDLVV 242

Query: 244 KS-GAKLLPGLLEYSRLVDANAEEPSNGPINSVQFHRNAQLLLATGLDRRLRFFQIDGKR 303
           KS G KL  G LEYS+LVDANA +PSNGPINSV FH+NAQLLL  GLDRRLRFFQIDGKR
Sbjct: 243 KSRGNKLCAGRLEYSKLVDANAADPSNGPINSVHFHQNAQLLLTAGLDRRLRFFQIDGKR 302

Query: 304 NTKIQSIFLEDCPVRKASFLPDGSQVIIAGRRKFFYSLDLVKAKVDKIGPLVGREEKSLE 363
           NTKIQSIFLEDCP+RKA+FLP+GSQVI++GRRKFFYS DL KAK DKIGPLVGREEKSLE
Sbjct: 303 NTKIQSIFLEDCPIRKAAFLPNGSQVIVSGRRKFFYSFDLEKAKFDKIGPLVGREEKSLE 362

Query: 364 VFEVSPDSSTVAFIGNEGYILLVSTKTKELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQ 423
            FEVS DS+T+AF+GNEGYILLVSTKTKELIGTLKMNGSVRSLAF++DG+ LLSSGGDGQ
Sbjct: 363 YFEVSQDSNTIAFVGNEGYILLVSTKTKELIGTLKMNGSVRSLAFSEDGKHLLSSGGDGQ 422

Query: 424 VYHWDLRTRTCIHKAVDEGCINGTALCTSPNGSLFAAGSDSGIVNIYNRQEFLGGKKKPL 483
           VY WDLRT  C++K VDEG   GT+LC+S NG+LFA+G+D GIVNIY + EF+GGK+KP+
Sbjct: 423 VYVWDLRTMKCLYKGVDEGSTCGTSLCSSLNGALFASGTDRGIVNIYKKSEFVGGKRKPI 482

Query: 484 KTIENLTTRVDFLKFNHDTQMLAICSRMKKSSLKLIHIPSFTIFSNWPPPKKNLQYPSCL 543
           KT++NLT+++DF+KFNHD Q+LAI S M K+S+KL+H+PS T+FSNWPPP   + YP CL
Sbjct: 483 KTVDNLTSKIDFMKFNHDAQILAIVSTMNKNSVKLVHVPSLTVFSNWPPPNSTMHYPRCL 542

Query: 544 DFSPEGGYMAVGNAAGKVLLYKLHHYHHA 562
           DFSP  G+MA+GNAAGKVLLYKLHHY +A
Sbjct: 543 DFSPGSGFMAMGNAAGKVLLYKLHHYQNA 546

[Close]

BLAST of MS009041.1 vs. TAIR 10
Match: AT1G15440.1 (periodic tryptophan protein 2 )

HSP 1 Score: 45.4 bits (106), Expect = 1.7e-04
Identity = 44/194 (22.68%), Postives = 77/194 (39.69%), Query Frame = 0


Query: 262 INSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQVIIA 321
           + ++ F  +   LL+  LD  +R +     +N K    +    P +  S   D S  ++ 
Sbjct: 434 VTALHFMADNHSLLSASLDGTVRAWDFKRYKNYK---TYTTPTPRQFVSLTADPSGDVVC 493

Query: 322 GRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVST-KTK 381
                 + + +   K  +I  ++   E  +     SP +  +A    +  + L     +K
Sbjct: 494 AGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASK 553

Query: 382 ELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCIHKAVDEGCINGTALCT 441
             + T + N  V ++AF  DG+QL SS  DGQ+  WD      ++       I G  + T
Sbjct: 554 GTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRDIAGGRVMT 613

Query: 442 SPNGSLFAAGSDSG 455
                  AA S SG
Sbjct: 614 DRRS---AANSSSG 621

[Close]

BLAST of MS009041.1 vs. TAIR 10
Match: AT1G15440.2 (periodic tryptophan protein 2 )

HSP 1 Score: 45.4 bits (106), Expect = 1.7e-04
Identity = 44/194 (22.68%), Postives = 77/194 (39.69%), Query Frame = 0


Query: 262 INSVQFHRNAQLLLATGLDRRLRFFQIDGKRNTKIQSIFLEDCPVRKASFLPDGSQVIIA 321
           + ++ F  +   LL+  LD  +R +     +N K    +    P +  S   D S  ++ 
Sbjct: 394 VTALHFMADNHSLLSASLDGTVRAWDFKRYKNYK---TYTTPTPRQFVSLTADPSGDVVC 453

Query: 322 GRRKFFYSLDLVKAKVDKIGPLVGREEKSLEVFEVSPDSSTVAFIGNEGYILLVST-KTK 381
                 + + +   K  +I  ++   E  +     SP +  +A    +  + L     +K
Sbjct: 454 AGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASK 513

Query: 382 ELIGTLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCIHKAVDEGCINGTALCT 441
             + T + N  V ++AF  DG+QL SS  DGQ+  WD      ++       I G  + T
Sbjct: 514 GTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRDIAGGRVMT 573

Query: 442 SPNGSLFAAGSDSG 455
                  AA S SG
Sbjct: 574 DRRS---AANSSSG 581

[Close]

BLAST of MS009041.1 vs. TAIR 10
Match: AT2G37160.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 8.5e-04
Identity = 27/100 (27.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 328 YSLDLVKAKVDKIGPLVGRE--EKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELI-G 387
           +S+D  KAK  K  P+      + ++     S D + +A +G +GY+ +    T++L+ G
Sbjct: 283 FSVD--KAKYSKSNPVARWHIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCG 342

Query: 388 TLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCI 425
                G++   A++ DG+ LL+ G D  V  W +  R  +
Sbjct: 343 VKSYYGALLCCAWSMDGKYLLTGGEDDLVQVWSMEDRKVV 380

[Close]

BLAST of MS009041.1 vs. TAIR 10
Match: AT2G37160.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 8.5e-04
Identity = 27/100 (27.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 328 YSLDLVKAKVDKIGPLVGRE--EKSLEVFEVSPDSSTVAFIGNEGYILLVSTKTKELI-G 387
           +S+D  KAK  K  P+      + ++     S D + +A +G +GY+ +    T++L+ G
Sbjct: 312 FSVD--KAKYSKSNPVARWHIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKLVCG 371

Query: 388 TLKMNGSVRSLAFADDGRQLLSSGGDGQVYHWDLRTRTCI 425
                G++   A++ DG+ LL+ G D  V  W +  R  +
Sbjct: 372 VKSYYGALLCCAWSMDGKYLLTGGEDDLVQVWSMEDRKVV 409

The following BLAST results are available for this feature:

BLAST of MS009041.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146398.1	0.0e+00	99.64	U3 small nucleolar RNA-associated protein 18 homolog [Momordica charantia]	[more]
XP_022963504.1	1.3e-280	87.41	U3 small nucleolar RNA-associated protein 18 homolog [Cucurbita moschata]	[more]
XP_038888553.1	3.2e-279	86.51	U3 small nucleolar RNA-associated protein 18 homolog isoform X1 [Benincasa hispi...	[more]
XP_038901788.1	4.2e-279	87.57	U3 small nucleolar RNA-associated protein 18 homolog [Benincasa hispida] >XP_038...	[more]
XP_023511721.1	5.4e-279	87.06	U3 small nucleolar RNA-associated protein 18 homolog [Cucurbita pepo subsp. pepo...	[more]

BLAST of MS009041.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMU5	9.5e-194	63.80	U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=...	[more]
Q9Y5J1	2.4e-80	36.48	U3 small nucleolar RNA-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=...	[more]
Q5SSI6	2.3e-78	34.47	U3 small nucleolar RNA-associated protein 18 homolog OS=Mus musculus OX=10090 GN...	[more]
P78750	5.8e-74	33.02	Probable U3 small nucleolar RNA-associated protein 18 OS=Schizosaccharomyces pom...	[more]
P40362	6.0e-55	31.96	U3 small nucleolar RNA-associated protein 18 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of MS009041.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYH1	0.0e+00	99.64	U3 small nucleolar RNA-associated protein 18 homolog OS=Momordica charantia OX=3...	[more]
A0A6J1HKC7	6.2e-281	87.41	U3 small nucleolar RNA-associated protein 18 homolog OS=Cucurbita moschata OX=36...	[more]
A0A1S3C7I9	5.8e-279	86.51	U3 small nucleolar RNA-associated protein 18 homolog OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1HWX2	1.1e-277	86.54	U3 small nucleolar RNA-associated protein 18 homolog OS=Cucurbita maxima OX=3661...	[more]
A0A6J1ET16	2.8e-273	85.31	U3 small nucleolar RNA-associated protein 18 homolog isoform X1 OS=Cucurbita mos...	[more]

BLAST of MS009041.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14050.1	6.8e-195	63.80	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G15440.1	1.7e-04	22.68	periodic tryptophan protein 2	[more]
AT1G15440.2	1.7e-04	22.68	periodic tryptophan protein 2	[more]
AT2G37160.1	8.5e-04	27.00	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G37160.2	8.5e-04	27.00	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 468..509 e-value: 220.0 score: 2.3 coord: 420..460 e-value: 0.78 score: 17.7 coord: 512..554 e-value: 17.0 score: 9.2 coord: 247..287 e-value: 4.5 score: 12.9 coord: 379..417 e-value: 7.4E-7 score: 38.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 383..417 e-value: 0.0047 score: 17.7 coord: 433..460 e-value: 0.041 score: 14.8
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 385..426 score: 11.678087
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 237..556 e-value: 2.4E-107 score: 361.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..205
None	No IPR available	PANTHER	PTHR18359:SF0	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 18 HOMOLOG	coord: 33..560
None	No IPR available	PANTHER	PTHR18359	WD-REPEAT PROTEIN-RELATED	coord: 33..560
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 385..420 score: 9.09833
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 258..555

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009041	MS009041	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009041.1-cds	MS009041.1-cds-scaffold385:413956..415638	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009041.1	MS009041.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding