MS004358.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS004358.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Low temperature and salt responsive protein family
Location	scaffold92: 2215439 .. 2215726 (+)
Sequence length	192
RNA-Seq Expression	MS004358.1
Synteny	MS004358.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGGCGTCCACACAGAGAGAGAGAATCATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGGCTTAACTCAAGTTCTTCACTTCTTTTTTCAAATCATTTTGCATTTTTGCTCATCAGTTTGTTGCTTGTGTTTTGAATTTGGAAGTGCAGGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA

mRNA sequence

GTTTTGGCGTCCACACAGAGAGAGAGAATCATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA

Coding sequence (CDS)

GTTTTGGCGTCCACACAGAGAGAGAGAATCATGGGTTCTGAGACTTTTGTGGAGATCATACTGGCAATTCTTCTACCACCTGTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTCTGGATCTGTTTGTTGCTGACCATATTGGGATACATACCTGGAATCATATATGCAATATATGTGCTAGTTGGA

Protein sequence

VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG

Homology

[Close]

BLAST of MS004358.1 vs. NCBI nr
Match: KAG7030774.1 (Hydrophobic protein RCI2A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIY 60
           + +   RERIMGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIY
Sbjct: 49  LFSHVNRERIMGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIY 108

Query: 61  VL 63
           VL
Sbjct: 109 VL 110

[Close]

BLAST of MS004358.1 vs. NCBI nr
Match: XP_022139042.1 (low temperature-induced protein lt101.2 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 5.8e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. NCBI nr
Match: XP_004143609.2 (uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetical protein Csa_000540 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 5   TQRER-IMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 64
           T++E+  MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 57  TEKEKEEMGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 116

[Close]

BLAST of MS004358.1 vs. NCBI nr
Match: XP_026412058.1 (low temperature-induced protein lt101.2 [Papaver somniferum])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPIGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. NCBI nr
Match: XP_023639589.1 (uncharacterized protein LOC111830941 [Capsella rubella])

HSP 1 Score: 106.7 bits (265), Expect = 7.6e-20
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1   VLASTQRERIMGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIY 60
           VL    ++  MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIY
Sbjct: 51  VLLLEYQKTKMGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIY 110

Query: 61  VLVG 65
           VLVG
Sbjct: 111 VLVG 114

[Close]

BLAST of MS004358.1 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.3e-18
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 63
          M + TFV+II+AILLPP+GVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of MS004358.1 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.7e-18
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 64
          M S TF+E+ILAI+LPPVGVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVLV
Sbjct: 1  MASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

[Close]

BLAST of MS004358.1 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-17
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 64
          MGS T +E+ILAI+LPPVGVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of MS004358.1 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-17
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 64
          MGS T +E+ILAI+LPPVGVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 1  MGSATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

[Close]

BLAST of MS004358.1 vs. ExPASy Swiss-Prot
Match: Q9ZNS6 (Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-16
Identity = 36/52 (69.23%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 63
          M + TFVEIILAI+LPP+GVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of MS004358.1 vs. ExPASy TrEMBL
Match: A0A6J1CCW8 (low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111010062 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-20
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. ExPASy TrEMBL
Match: A0A6J1KKG3 (low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493964 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. ExPASy TrEMBL
Match: Q941D7 (At2g38901/At2g38901 OS=Arabidopsis thaliana OX=3702 GN=At2g38905 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. ExPASy TrEMBL
Match: A0A178W1U1 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g35820 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. ExPASy TrEMBL
Match: A0A6J1FUC5 (low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC111446956 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETFVEIILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFVEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 65
          MGSETF+EIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG
Sbjct: 1  MGSETFLEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVG 54

[Close]

BLAST of MS004358.1 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-19
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 63
          M + TFV+II+AILLPP+GVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL
Sbjct: 1  MSTATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVL 52

[Close]

BLAST of MS004358.1 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 83.6 bits (205), Expect = 6.4e-17
Identity = 36/52 (69.23%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 63
          M + TFVEIILAI+LPP+GVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++
Sbjct: 1  MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYII 52

[Close]

BLAST of MS004358.1 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-14
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 11 MGSETFVEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVL 63
          MGS  F+E++ AI +PPVGVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL
Sbjct: 1  MGS--FLEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVL 50

[Close]

BLAST of MS004358.1 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 14 ETFVEIILAILLPPVGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV 64
          E F EI++AILLPP+GV L+ G C VEF ICL+LTILGYIPGIIYA+YV+V
Sbjct: 6  EVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIV 56

The following BLAST results are available for this feature:

BLAST of MS004358.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030774.1	6.9e-21	88.71	Hydrophobic protein RCI2A, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022139042.1	5.8e-20	100.00	low temperature-induced protein lt101.2 [Momordica charantia]	[more]
XP_004143609.2	7.6e-20	90.16	uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetica...	[more]
XP_026412058.1	7.6e-20	98.15	low temperature-induced protein lt101.2 [Papaver somniferum]	[more]
XP_023639589.1	7.6e-20	85.94	uncharacterized protein LOC111830941 [Capsella rubella]	[more]

BLAST of MS004358.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNQ7	4.3e-18	82.69	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]
Q9ARD5	5.7e-18	83.02	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	1.3e-17	84.91	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	1.3e-17	84.91	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]
Q9ZNS6	9.1e-16	69.23	Hydrophobic protein RCI2B OS=Arabidopsis thaliana OX=3702 GN=RCI2B PE=2 SV=1	[more]

BLAST of MS004358.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCW8	2.8e-20	100.00	low temperature-induced protein lt101.2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1KKG3	6.3e-20	98.15	low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493...	[more]
Q941D7	6.3e-20	98.15	At2g38901/At2g38901 OS=Arabidopsis thaliana OX=3702 GN=At2g38905 PE=2 SV=1	[more]
A0A178W1U1	6.3e-20	98.15	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g...	[more]
A0A6J1FUC5	6.3e-20	98.15	low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of MS004358.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	1.2e-23	98.15	Low temperature and salt responsive protein family	[more]
AT3G05880.1	3.1e-19	82.69	Low temperature and salt responsive protein family	[more]
AT3G05890.1	6.4e-17	69.23	Low temperature and salt responsive protein family	[more]
AT1G57550.1	1.8e-14	69.23	Low temperature and salt responsive protein family	[more]
AT4G30650.1	1.6e-12	72.55	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 16..63 e-value: 7.6E-21 score: 74.0
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 11..63
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 20..35
None	No IPR available	PANTHER	PTHR21659:SF96	BNAA04G22250D PROTEIN	coord: 11..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS004358	MS004358	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS004358.1-cds	MS004358.1-cds-scaffold92:2215439..2215549	CDS
MS004358.1-cds	MS004358.1-cds-scaffold92:2215646..2215726	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS004358.1	MS004358.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane