MS003340.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS003340.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	thioredoxin H4-1-like
Location	scaffold234: 2226534 .. 2227364 (+)
Sequence length	396
RNA-Seq Expression	MS003340.1
Synteny	MS003340.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTCAATAGTGATCAAGAAGACCAGGGCGAGGTCCAGAATGTTGATAGCAAAAACGTACATCTCATTACATCAATGGAGACGTGGGAGGCGAAGCTCTTGGAAGCAACCAAAGATGGCAAGATTGTAAGTTTCTCCTACAGTGTTGTTTCCTTAATGGCAGGATAGGGACTAAATTTCTAGCTTGTTTATTCATTGTGTTCGACATTTAACAAATTCAAGACTTTTTTCATTTATCTAAGTGAATAGTGAAGAAAAATCTACAGTGAGAGAATTGTTTTACCTCAAAACTATGCAACAGGTTATTGCAAATTTCTGTGCACCATGGTGTAGACCCAGTAAATCCATGACAGCAGGGTATTGTGAGCTTGCTGATAAGTATACCTCCATGGTATTTTTGGCCATTGACGTCGACGAGCTGGCTGTAAGTAAAAGCACTTTCCCATATTTATAGAACTTCATTATCTATGACTCTACCTTTCAATTTTAACAGTTAGGCATGTATATCTAGATTTTATTGTTTCCAAAAATTCTATACAATTTCAGATGAGAAATGAGAAATAAAAGAACAATTATCAAATACTTGTGTTTTTAGAACGTTGAAAACAAAGAATAGGGTGTAGTTTATTGTTTTATAATGTGGTTTGAATGGAAATTTCTTACACTGAGGTGTGGGGTGTGCAGGAGCTTAGTACGTCGTGGGAGATCAAAGCGACTCCAACGTTCGTGTTCCTTAAAGATGGACGCCAATTAGATAAATTAGTAGGGGCTAACAAGTCAGATCTGCAACAGAAGCTAGCTGCTATGGAAGATGTAACCAAATCTCAGAGC

mRNA sequence

TTTTTCAATAGTGATCAAGAAGACCAGGGCGAGGTCCAGAATGTTGATAGCAAAAACGTACATCTCATTACATCAATGGAGACGTGGGAGGCGAAGCTCTTGGAAGCAACCAAAGATGGCAAGATTGTTATTGCAAATTTCTGTGCACCATGGTGTAGACCCAGTAAATCCATGACAGCAGGGTATTGTGAGCTTGCTGATAAGTATACCTCCATGGTATTTTTGGCCATTGACGTCGACGAGCTGGCTGAGCTTAGTACGTCGTGGGAGATCAAAGCGACTCCAACGTTCGTGTTCCTTAAAGATGGACGCCAATTAGATAAATTAGTAGGGGCTAACAAGTCAGATCTGCAACAGAAGCTAGCTGCTATGGAAGATGTAACCAAATCTCAGAGC

Coding sequence (CDS)

TTTTTCAATAGTGATCAAGAAGACCAGGGCGAGGTCCAGAATGTTGATAGCAAAAACGTACATCTCATTACATCAATGGAGACGTGGGAGGCGAAGCTCTTGGAAGCAACCAAAGATGGCAAGATTGTTATTGCAAATTTCTGTGCACCATGGTGTAGACCCAGTAAATCCATGACAGCAGGGTATTGTGAGCTTGCTGATAAGTATACCTCCATGGTATTTTTGGCCATTGACGTCGACGAGCTGGCTGAGCTTAGTACGTCGTGGGAGATCAAAGCGACTCCAACGTTCGTGTTCCTTAAAGATGGACGCCAATTAGATAAATTAGTAGGGGCTAACAAGTCAGATCTGCAACAGAAGCTAGCTGCTATGGAAGATGTAACCAAATCTCAGAGC

Protein sequence

FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLAAMEDVTKSQS

Homology

[Close]

BLAST of MS003340.1 vs. NCBI nr
Match: XP_022134270.1 (thioredoxin H4-1-like [Momordica charantia])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTA 60
           FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTA
Sbjct: 8   FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTA 67

Query: 61  GYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQK 120
           GYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQK
Sbjct: 68  GYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQK 127

Query: 121 LAAMEDVTKSQS 133
           LAAMEDVTKSQS
Sbjct: 128 LAAMEDVTKSQS 139

[Close]

BLAST of MS003340.1 vs. NCBI nr
Match: XP_038890472.1 (thioredoxin H4-1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-56
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTA 60
           FFNS QED  EVQNVDSKNVHLITSME WEAKLLEATKDGKIVIANF APWCRP KSMT 
Sbjct: 8   FFNSVQEDYAEVQNVDSKNVHLITSMEKWEAKLLEATKDGKIVIANFSAPWCRPCKSMTP 67

Query: 61  GYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQK 120
            YCELADKYTSMVFLAIDVDELAELSTSW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK
Sbjct: 68  AYCELADKYTSMVFLAIDVDELAELSTSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQK 127

Query: 121 LAAM-EDVTKSQS 133
           +AAM E V KSQS
Sbjct: 128 IAAMDESVIKSQS 140

[Close]

BLAST of MS003340.1 vs. NCBI nr
Match: XP_038890471.1 (thioredoxin H4-1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 114/130 (87.69%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 4   SDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYC 63
           S QED  EVQNVDSKNVHLITSME WEAKLLEATKDGKIVIANF APWCRP KSMT  YC
Sbjct: 34  SVQEDYAEVQNVDSKNVHLITSMEKWEAKLLEATKDGKIVIANFSAPWCRPCKSMTPAYC 93

Query: 64  ELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLAA 123
           ELADKYTSMVFLAIDVDELAELSTSW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK+AA
Sbjct: 94  ELADKYTSMVFLAIDVDELAELSTSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQKIAA 153

Query: 124 M-EDVTKSQS 133
           M E V KSQS
Sbjct: 154 MDESVIKSQS 163

[Close]

BLAST of MS003340.1 vs. NCBI nr
Match: XP_011656041.1 (thioredoxin H-type isoform X2 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 2   FNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAG 61
           FNS QED  EVQNVDSKNVHLITSME WEAKLLEAT+DGKIVIANF A WCRP KSMT  
Sbjct: 3   FNSGQEDYAEVQNVDSKNVHLITSMEKWEAKLLEATEDGKIVIANFSAHWCRPCKSMTPA 62

Query: 62  YCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKL 121
           YCELADKYTSMVFLAIDVDELAELSTSW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK+
Sbjct: 63  YCELADKYTSMVFLAIDVDELAELSTSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQKI 122

Query: 122 AAMED 127
           AAM++
Sbjct: 123 AAMDE 127

[Close]

BLAST of MS003340.1 vs. NCBI nr
Match: XP_004141512.2 (thioredoxin H4-1 isoform X1 [Cucumis sativus] >KGN52589.1 hypothetical protein Csa_008226 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 2   FNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAG 61
           FNS QED  EVQNVDSKNVHLITSME WEAKLLEAT+DGKIVIANF A WCRP KSMT  
Sbjct: 9   FNSGQEDYAEVQNVDSKNVHLITSMEKWEAKLLEATEDGKIVIANFSAHWCRPCKSMTPA 68

Query: 62  YCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKL 121
           YCELADKYTSMVFLAIDVDELAELSTSW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK+
Sbjct: 69  YCELADKYTSMVFLAIDVDELAELSTSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQKI 128

Query: 122 AAMED 127
           AAM++
Sbjct: 129 AAMDE 133

[Close]

BLAST of MS003340.1 vs. ExPASy Swiss-Prot
Match: P85801 (Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.2e-34
Identity = 69/124 (55.65%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 3   NSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGY 62
           N D +D      +   NVHLIT+ E W+ KL EA++DGKIV+ANF A WC P K +   Y
Sbjct: 9   NHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYY 68

Query: 63  CELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLA 122
            EL++ Y S++FL IDVDEL++ S SWEIKATPTF FL+DG+Q+DKLVGANK +L +K+ 
Sbjct: 69  IELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKIT 128

Query: 123 AMED 127
           A+ D
Sbjct: 129 AILD 132

[Close]

BLAST of MS003340.1 vs. ExPASy Swiss-Prot
Match: Q9C9Y6 (Thioredoxin H9 OS=Arabidopsis thaliana OX=3702 GN=TRX9 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.9e-33
Identity = 66/121 (54.55%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 8   DQGEVQNVD--SKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYCEL 67
           D   V NV+    NVHLIT+ E+W+ KL EA +DGKIV+ANF A WC P K +   + EL
Sbjct: 11  DDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIEL 70

Query: 68  ADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLAAME 127
           ++K++S++FL +DVDEL++ S+SW+IKATPTF FLK+G+Q+ KLVGANK +LQ+K+ ++ 
Sbjct: 71  SEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSII 130

[Close]

BLAST of MS003340.1 vs. ExPASy Swiss-Prot
Match: Q9AS75 (Thioredoxin H4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0168200 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.4e-32
Identity = 67/125 (53.60%), Postives = 91/125 (72.80%), Query Frame = 0


Query: 4   SDQEDQGEVQNVDSK--NVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAG 63
           SD+ED+     +D K  NVH+I++ E W+ K+ EA KDGKIVIANF A WC P + +   
Sbjct: 10  SDEEDK-----IDFKGGNVHVISNKENWDHKIAEANKDGKIVIANFSAAWCGPCRVIAPV 69

Query: 64  YCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKL 123
           Y E++  Y   +FL IDVDEL + S+SW+I+ATPTF FLK+G Q+DKLVGANK +L++K+
Sbjct: 70  YAEMSQTYPQFMFLTIDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGANKPELEKKV 129

Query: 124 AAMED 127
           AA+ D
Sbjct: 130 AALAD 129

[Close]

BLAST of MS003340.1 vs. ExPASy Swiss-Prot
Match: Q0DKF1 (Thioredoxin H4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0169000 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.6e-30
Identity = 58/108 (53.70%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 19  NVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYCELADKYTSMVFLAID 78
           NVH+ITS E W+ K+ EA KDGKIV+ANF A WC P + +   Y E++  Y  ++FL ID
Sbjct: 23  NVHVITSKEDWDRKIEEANKDGKIVVANFSASWCGPCRVIAPIYAEMSKTYPQLMFLTID 82

Query: 79  VDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLAAMED 127
           VD+L + S+SW+I+ATPTF F+K+ +Q+DKLVGANK +L++K+ A+ D
Sbjct: 83  VDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGANKPELEKKVQALAD 130

[Close]

BLAST of MS003340.1 vs. ExPASy Swiss-Prot
Match: Q9LXZ8 (Putative thioredoxin H10 OS=Arabidopsis thaliana OX=3702 GN=At3g56420 PE=3 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 6.0e-30
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 3   NSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGY 62
           N++   Q   Q+     VH ++ +E WE K+ EA   GKI++ NF APWC P K +   +
Sbjct: 25  NNNSYGQTRSQHGSKGKVHPVSRIEKWEEKITEANNHGKILVVNFSAPWCVPCKKIEPVF 84

Query: 63  CELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLA 122
            +LA +Y SM+F+ +DV+ELAE S  W ++ATPT VFLKDGRQ+DKLVGA  S+LQ+K A
Sbjct: 85  RDLASRYPSMIFVTVDVEELAEFSNEWNVEATPTVVFLKDGRQMDKLVGAETSELQKKTA 144

Query: 123 AMEDV 128
           A  D+
Sbjct: 145 AAADL 149

[Close]

BLAST of MS003340.1 vs. ExPASy TrEMBL
Match: A0A6J1BXU2 (thioredoxin H4-1-like OS=Momordica charantia OX=3673 GN=LOC111006572 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.5e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTA 60
           FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTA
Sbjct: 8   FFNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTA 67

Query: 61  GYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQK 120
           GYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQK
Sbjct: 68  GYCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQK 127

Query: 121 LAAMEDVTKSQS 133
           LAAMEDVTKSQS
Sbjct: 128 LAAMEDVTKSQS 139

[Close]

BLAST of MS003340.1 vs. ExPASy TrEMBL
Match: A0A0A0KUM3 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G645140 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.2e-54
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 2   FNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAG 61
           FNS QED  EVQNVDSKNVHLITSME WEAKLLEAT+DGKIVIANF A WCRP KSMT  
Sbjct: 9   FNSGQEDYAEVQNVDSKNVHLITSMEKWEAKLLEATEDGKIVIANFSAHWCRPCKSMTPA 68

Query: 62  YCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKL 121
           YCELADKYTSMVFLAIDVDELAELSTSW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK+
Sbjct: 69  YCELADKYTSMVFLAIDVDELAELSTSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQKI 128

Query: 122 AAMED 127
           AAM++
Sbjct: 129 AAMDE 133

[Close]

BLAST of MS003340.1 vs. ExPASy TrEMBL
Match: A0A1S3CBI4 (thioredoxin H-type OS=Cucumis melo OX=3656 GN=LOC103498606 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 2   FNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAG 61
           FNS QED  EVQNVDSKNVHLITSME WEAKLLEAT+DGKIVIANF A WCRP KSMT  
Sbjct: 9   FNSAQEDYREVQNVDSKNVHLITSMEKWEAKLLEATQDGKIVIANFSAHWCRPCKSMTPA 68

Query: 62  YCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKL 121
           YCELADKYTSMVFLAIDVDELAELSTSW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK+
Sbjct: 69  YCELADKYTSMVFLAIDVDELAELSTSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQKI 128

Query: 122 AAMED 127
           AAM++
Sbjct: 129 AAMDE 133

[Close]

BLAST of MS003340.1 vs. ExPASy TrEMBL
Match: A0A6J1JH67 (thioredoxin H4-1-like OS=Cucurbita maxima OX=3661 GN=LOC111486972 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.9e-51
Identity = 104/125 (83.20%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 2   FNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAG 61
           F+SDQED  EVQNVDSKNVHLI SME WEAKLLEAT+DGKIVIANF A W RP KSMT  
Sbjct: 9   FSSDQEDYAEVQNVDSKNVHLIGSMEKWEAKLLEATRDGKIVIANFSASWSRPCKSMTPA 68

Query: 62  YCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKL 121
           YCELADKYTSMVFLAIDVDELAELS SW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK+
Sbjct: 69  YCELADKYTSMVFLAIDVDELAELSKSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQKI 128

Query: 122 AAMED 127
            AM++
Sbjct: 129 TAMDE 133

[Close]

BLAST of MS003340.1 vs. ExPASy TrEMBL
Match: A0A6J1H8J4 (thioredoxin H4-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461044 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.9e-51
Identity = 104/125 (83.20%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 2   FNSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAG 61
           F+SDQED  EVQNVDSKNVHLI SME WEAKLLEAT+DGKIVIANF A W RP KSMT  
Sbjct: 9   FSSDQEDYAEVQNVDSKNVHLIGSMEKWEAKLLEATRDGKIVIANFSASWSRPCKSMTPA 68

Query: 62  YCELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKL 121
           YCELADKYTSMVFLAIDVDELAELS SW+IKATPTFVF KDGRQ+DKLVGA+KSDLQQK+
Sbjct: 69  YCELADKYTSMVFLAIDVDELAELSKSWDIKATPTFVFFKDGRQVDKLVGADKSDLQQKI 128

Query: 122 AAMED 127
            AM++
Sbjct: 129 TAMDE 133

[Close]

BLAST of MS003340.1 vs. TAIR 10
Match: AT3G08710.1 (thioredoxin H-type 9 )

HSP 1 Score: 141.0 bits (354), Expect = 7.0e-34
Identity = 66/121 (54.55%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 8   DQGEVQNVD--SKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYCEL 67
           D   V NV+    NVHLIT+ E+W+ KL EA +DGKIV+ANF A WC P K +   + EL
Sbjct: 11  DDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIEL 70

Query: 68  ADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLAAME 127
           ++K++S++FL +DVDEL++ S+SW+IKATPTF FLK+G+Q+ KLVGANK +LQ+K+ ++ 
Sbjct: 71  SEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSII 130

[Close]

BLAST of MS003340.1 vs. TAIR 10
Match: AT3G08710.2 (thioredoxin H-type 9 )

HSP 1 Score: 141.0 bits (354), Expect = 7.0e-34
Identity = 66/121 (54.55%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 8   DQGEVQNVD--SKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYCEL 67
           D   V NV+    NVHLIT+ E+W+ KL EA +DGKIV+ANF A WC P K +   + EL
Sbjct: 11  DDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIEL 70

Query: 68  ADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLAAME 127
           ++K++S++FL +DVDEL++ S+SW+IKATPTF FLK+G+Q+ KLVGANK +LQ+K+ ++ 
Sbjct: 71  SEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSII 130

[Close]

BLAST of MS003340.1 vs. TAIR 10
Match: AT3G56420.1 (Thioredoxin superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-31
Identity = 61/125 (48.80%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 3   NSDQEDQGEVQNVDSKNVHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGY 62
           N++   Q   Q+     VH ++ +E WE K+ EA   GKI++ NF APWC P K +   +
Sbjct: 25  NNNSYGQTRSQHGSKGKVHPVSRIEKWEEKITEANNHGKILVVNFSAPWCVPCKKIEPVF 84

Query: 63  CELADKYTSMVFLAIDVDELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLA 122
            +LA +Y SM+F+ +DV+ELAE S  W ++ATPT VFLKDGRQ+DKLVGA  S+LQ+K A
Sbjct: 85  RDLASRYPSMIFVTVDVEELAEFSNEWNVEATPTVVFLKDGRQMDKLVGAETSELQKKTA 144

Query: 123 AMEDV 128
           A  D+
Sbjct: 145 AAADL 149

[Close]

BLAST of MS003340.1 vs. TAIR 10
Match: AT2G40790.1 (C-terminal cysteine residue is changed to a serine 2 )

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-30
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 0


Query: 20  VHLITSMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYCELADKYTSMVFLAIDV 79
           VH ++ ME WE K+ EA   GKI++ NF A WC PSK++   Y ELA  YTSM+F+ IDV
Sbjct: 42  VHPVSRMEKWEEKITEANSHGKILVVNFKASWCLPSKTILPIYQELASTYTSMIFVTIDV 101

Query: 80  DELAELSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLAAMEDVTKSQS 133
           +ELAE S  W + ATPT VFLKDGRQ+DKLVG + ++LQ+K AA  ++   QS
Sbjct: 102 EELAEFSHEWNVDATPTVVFLKDGRQMDKLVGGDAAELQKKTAAAANLLLRQS 154

[Close]

BLAST of MS003340.1 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 94.4 bits (233), Expect = 7.5e-20
Identity = 40/98 (40.82%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 25  SMETWEAKLLEATKDGKIVIANFCAPWCRPSKSMTAGYCELADKYTSMVFLAIDVDELAE 84
           ++ETW  +L +A +   +V+ +F A WC P + +   + +LA K  +++FL +D DEL  
Sbjct: 13  TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS 72

Query: 85  LSTSWEIKATPTFVFLKDGRQLDKLVGANKSDLQQKLA 123
           +++ W I+A PTF+FLK+G+ LDK+VGA K +LQ  +A
Sbjct: 73  VASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIA 110

The following BLAST results are available for this feature:

BLAST of MS003340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134270.1	1.6e-67	100.00	thioredoxin H4-1-like [Momordica charantia]	[more]
XP_038890472.1	1.2e-56	87.97	thioredoxin H4-1-like isoform X2 [Benincasa hispida]	[more]
XP_038890471.1	1.5e-54	87.69	thioredoxin H4-1-like isoform X1 [Benincasa hispida]	[more]
XP_011656041.1	1.3e-53	86.40	thioredoxin H-type isoform X2 [Cucumis sativus]	[more]
XP_004141512.2	1.3e-53	86.40	thioredoxin H4-1 isoform X1 [Cucumis sativus] >KGN52589.1 hypothetical protein C...	[more]

BLAST of MS003340.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P85801	5.2e-34	55.65	Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1	[more]
Q9C9Y6	9.9e-33	54.55	Thioredoxin H9 OS=Arabidopsis thaliana OX=3702 GN=TRX9 PE=1 SV=1	[more]
Q9AS75	6.4e-32	53.60	Thioredoxin H4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0168200 PE=2 S...	[more]
Q0DKF1	4.6e-30	53.70	Thioredoxin H4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0169000 PE=2 S...	[more]
Q9LXZ8	6.0e-30	48.80	Putative thioredoxin H10 OS=Arabidopsis thaliana OX=3702 GN=At3g56420 PE=3 SV=2	[more]

BLAST of MS003340.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXU2	7.5e-68	100.00	thioredoxin H4-1-like OS=Momordica charantia OX=3673 GN=LOC111006572 PE=4 SV=1	[more]
A0A0A0KUM3	6.2e-54	86.40	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G645140...	[more]
A0A1S3CBI4	1.4e-53	86.40	thioredoxin H-type OS=Cucumis melo OX=3656 GN=LOC103498606 PE=4 SV=1	[more]
A0A6J1JH67	2.9e-51	83.20	thioredoxin H4-1-like OS=Cucurbita maxima OX=3661 GN=LOC111486972 PE=4 SV=1	[more]
A0A6J1H8J4	2.9e-51	83.20	thioredoxin H4-1-like OS=Cucurbita moschata OX=3662 GN=LOC111461044 PE=4 SV=1	[more]

BLAST of MS003340.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08710.1	7.0e-34	54.55	thioredoxin H-type 9	[more]
AT3G08710.2	7.0e-34	54.55	thioredoxin H-type 9	[more]
AT3G56420.1	4.3e-31	48.80	Thioredoxin superfamily protein	[more]
AT2G40790.1	1.2e-30	54.87	C-terminal cysteine residue is changed to a serine 2	[more]
AT3G51030.1	7.5e-20	40.82	thioredoxin H-type 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 2..131 e-value: 1.2E-35 score: 124.1
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 4..127
None	No IPR available	PANTHER	PTHR10438:SF394	THIOREDOXIN-LIKE PROTEIN CXXS2-RELATED	coord: 4..127
None	No IPR available	CDD	cd02947	TRX_family	coord: 33..122 e-value: 2.69364E-25 score: 89.9248
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 24..122 e-value: 9.8E-19 score: 67.3
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..129 score: 10.781015
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 16..122

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS003340	MS003340	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS003340.1-cds	MS003340.1-cds-scaffold234:2226534..2226659	CDS
MS003340.1-cds	MS003340.1-cds-scaffold234:2226835..2226957	CDS
MS003340.1-cds	MS003340.1-cds-scaffold234:2227218..2227364	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS003340.1	MS003340.1-protein	polypeptide