MS002907.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002907.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	X8 domain-containing protein
Location	scaffold359: 582897 .. 583166 (-)
Sequence length	270
RNA-Seq Expression	MS002907.1
Synteny	MS002907.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTGCATAGCGGATGAACAAGTACCCGATGATGAGCTACAAAGAGCACTTGATTGGGCTTGTGGGAAAGGAGGGGCAGATTGCAGAAAGATTCAAGTGAAACAGCCTTGTTTTTACCCCAACACTGTGAGGGACCATGCTTCCTATGCCTTCAACACTTACTACCAAAAGTTCAAGCACAAGGGAGCCACTTGCTACTTCAACTCAGCTGCCATGGTCACTGCCCTTGATCCTAGTAAGTACTTAATTACTCGTCACCCACCCGACATC

mRNA sequence

TGGTGCATAGCGGATGAACAAGTACCCGATGATGAGCTACAAAGAGCACTTGATTGGGCTTGTGGGAAAGGAGGGGCAGATTGCAGAAAGATTCAAGTGAAACAGCCTTGTTTTTACCCCAACACTGTGAGGGACCATGCTTCCTATGCCTTCAACACTTACTACCAAAAGTTCAAGCACAAGGGAGCCACTTGCTACTTCAACTCAGCTGCCATGGTCACTGCCCTTGATCCTAGTAAGTACTTAATTACTCGTCACCCACCCGACATC

Coding sequence (CDS)

TGGTGCATAGCGGATGAACAAGTACCCGATGATGAGCTACAAAGAGCACTTGATTGGGCTTGTGGGAAAGGAGGGGCAGATTGCAGAAAGATTCAAGTGAAACAGCCTTGTTTTTACCCCAACACTGTGAGGGACCATGCTTCCTATGCCTTCAACACTTACTACCAAAAGTTCAAGCACAAGGGAGCCACTTGCTACTTCAACTCAGCTGCCATGGTCACTGCCCTTGATCCTAGTAAGTACTTAATTACTCGTCACCCACCCGACATC

Protein sequence

WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKHKGATCYFNSAAMVTALDPSKYLITRHPPDI

Homology

[Close]

BLAST of MS002907.1 vs. NCBI nr
Match: XP_022142612.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 3.8e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH
Sbjct: 32  WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 91

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVTALDPS
Sbjct: 92  KGATCYFNSAAMVTALDPS 110

[Close]

BLAST of MS002907.1 vs. NCBI nr
Match: XP_038895406.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like [Benincasa hispida])

HSP 1 Score: 173.3 bits (438), Expect = 9.3e-40
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADCR IQ+KQPCFYPNTVRDHASYAFN+YYQKFKH
Sbjct: 33  WCIADEQVPDDELQRALDWACGKGGADCRNIQMKQPCFYPNTVRDHASYAFNSYYQKFKH 92

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVTALDPS
Sbjct: 93  KGATCYFNSAAMVTALDPS 111

[Close]

BLAST of MS002907.1 vs. NCBI nr
Match: XP_011654946.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5 [Cucumis sativus] >XP_031738418.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like [Cucumis sativus] >KAE8652861.1 hypothetical protein Csa_013005 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADCR IQ+KQPCFYPNTVRDHASYAFN+YYQKFKH
Sbjct: 38  WCIADEQVPDDELQRALDWACGKGGADCRNIQMKQPCFYPNTVRDHASYAFNSYYQKFKH 97

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVT+LDPS
Sbjct: 98  KGATCYFNSAAMVTSLDPS 116

[Close]

BLAST of MS002907.1 vs. NCBI nr
Match: KAE8637357.1 (hypothetical protein CSA_011907 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADCR IQ+KQPCFYPNTVRDHASYAFN+YYQKFKH
Sbjct: 73  WCIADEQVPDDELQRALDWACGKGGADCRNIQMKQPCFYPNTVRDHASYAFNSYYQKFKH 132

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVT+LDPS
Sbjct: 133 KGATCYFNSAAMVTSLDPS 151

[Close]

BLAST of MS002907.1 vs. NCBI nr
Match: XP_008463607.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 2.3e-38
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADC  IQ+KQPCFYPNT+RDHASYAFN+YYQKFKH
Sbjct: 38  WCIADEQVPDDELQRALDWACGKGGADCTNIQMKQPCFYPNTLRDHASYAFNSYYQKFKH 97

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVT+LDPS
Sbjct: 98  KGATCYFNSAAMVTSLDPS 116

[Close]

BLAST of MS002907.1 vs. ExPASy Swiss-Prot
Match: Q8VYE5 (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana OX=3702 GN=At4g29360 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.0e-20
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIA  Q    ELQ ALDWACG G  DC  +Q  QPCF P+TV  HASYAFNTYYQ+   
Sbjct: 391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGA 450

Query: 61  KGATCYFNSAAMVTALDPS 80
               C FN A++    DPS
Sbjct: 451 SSIDCSFNGASVEVDKDPS 469

[Close]

BLAST of MS002907.1 vs. ExPASy Swiss-Prot
Match: Q94CD8 (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-19
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           +C+A     DD+L   L+WACG+G A+C  IQ  QPC+ PN V+ HAS+AFN YYQK K 
Sbjct: 362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKS 421

Query: 61  KGATCYFNSAAMVTALDPS 80
            G TC F+  A+ T  DPS
Sbjct: 422 AGGTCDFDGTAITTTRDPS 440

[Close]

BLAST of MS002907.1 vs. ExPASy Swiss-Prot
Match: O65399 (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-17
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           +CIA + V    LQ ALDWACG G ++C +IQ  + C+ PN V+ HAS+AFN+YYQK   
Sbjct: 381 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGR 440

Query: 61  KGATCYFNSAAMVTALDPS 80
              +C F   AM+T  DPS
Sbjct: 441 ASGSCDFKGVAMITTTDPS 459

[Close]

BLAST of MS002907.1 vs. ExPASy Swiss-Prot
Match: Q9FJU9 (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-16
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIA  +  + +L+ ALDWACG G  DC  IQ  QPCF P+T+  HAS+ FN+Y+Q+ + 
Sbjct: 369 WCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRA 428

Query: 61  KGATCYFNSAAMVTALDPS 80
               C F  A +    DPS
Sbjct: 429 TDVACSFGGAGVKVNKDPS 447

[Close]

BLAST of MS002907.1 vs. ExPASy Swiss-Prot
Match: Q9M2K6 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana OX=3702 GN=PDCB5 PE=2 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-16
Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WC+A     D  LQ A++WACG+GGADC  IQ   PC  P  V+  AS+ FN YY K   
Sbjct: 41  WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGE 100

Query: 61  KGATCYFNSAAMVTALDPSK 81
           +   C FN+ A +T+L+PS+
Sbjct: 101 EDEACNFNNNAALTSLNPSQ 120

[Close]

BLAST of MS002907.1 vs. ExPASy TrEMBL
Match: A0A6J1CNC5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Momordica charantia OX=3673 GN=LOC111012685 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH
Sbjct: 32  WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 91

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVTALDPS
Sbjct: 92  KGATCYFNSAAMVTALDPS 110

[Close]

BLAST of MS002907.1 vs. ExPASy TrEMBL
Match: A0A0A0LW57 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181450 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADCR IQ+KQPCFYPNTVRDHASYAFN+YYQKFKH
Sbjct: 34  WCIADEQVPDDELQRALDWACGKGGADCRNIQMKQPCFYPNTVRDHASYAFNSYYQKFKH 93

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVT+LDPS
Sbjct: 94  KGATCYFNSAAMVTSLDPS 112

[Close]

BLAST of MS002907.1 vs. ExPASy TrEMBL
Match: A0A1S3CJN7 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Cucumis melo OX=3656 GN=LOC103501716 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADC  IQ+KQPCFYPNT+RDHASYAFN+YYQKFKH
Sbjct: 38  WCIADEQVPDDELQRALDWACGKGGADCTNIQMKQPCFYPNTLRDHASYAFNSYYQKFKH 97

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGATCYFNSAAMVT+LDPS
Sbjct: 98  KGATCYFNSAAMVTSLDPS 116

[Close]

BLAST of MS002907.1 vs. ExPASy TrEMBL
Match: A0A6J1EBZ4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Cucurbita moschata OX=3662 GN=LOC111432636 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.2e-38
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGADC  IQVK+PCFYPNTVRDHASYAFN+YYQKFKH
Sbjct: 33  WCIADEQVPDDELQRALDWACGKGGADCGDIQVKRPCFYPNTVRDHASYAFNSYYQKFKH 92

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGA+C+FNSAAMVTALDPS
Sbjct: 93  KGASCFFNSAAMVTALDPS 111

[Close]

BLAST of MS002907.1 vs. ExPASy TrEMBL
Match: A0A6J1HUR1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Cucurbita maxima OX=3661 GN=LOC111466373 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.1e-37
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIADEQVPDDELQRALDWACGKGGA+C  IQVK+PCFYP+TVRDHASYAFN+YYQKFKH
Sbjct: 33  WCIADEQVPDDELQRALDWACGKGGANCGDIQVKRPCFYPDTVRDHASYAFNSYYQKFKH 92

Query: 61  KGATCYFNSAAMVTALDPS 80
           KGA+C+FNSAAMVTALDPS
Sbjct: 93  KGASCFFNSAAMVTALDPS 111

[Close]

BLAST of MS002907.1 vs. TAIR 10
Match: AT5G35740.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 8.1e-34
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVK-QPCFYPNTVRDHASYAFNTYYQKFK 60
           WCIADEQ PDDELQ ALDWACGKGGADC K+Q + QPCF PNT+RDHAS+AFN+YYQ +K
Sbjct: 30  WCIADEQTPDDELQAALDWACGKGGADCSKMQQENQPCFLPNTIRDHASFAFNSYYQTYK 89

Query: 61  HKGATCYFNSAAMVTALDPS 80
           +KG +CYF  AAM+T LDPS
Sbjct: 90  NKGGSCYFKGAAMITELDPS 109

[Close]

BLAST of MS002907.1 vs. TAIR 10
Match: AT2G04910.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-28
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 1  WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
          WC+AD Q+PD+ +Q A+DWAC  GGADC  IQ  QPCF PNTV+DHAS  FN YYQ++K 
Sbjct: 15 WCVADGQIPDNVIQAAVDWACQTGGADCSTIQPNQPCFLPNTVKDHASVVFNNYYQRYKR 74

Query: 61 KGATCYFNSAAMVTALDPSKYL 83
           G +C FNS A +T  DPSK L
Sbjct: 75 NGGSCNFNSTAFITQTDPSKQL 96

[Close]

BLAST of MS002907.1 vs. TAIR 10
Match: AT2G04910.2 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-27
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
          WC+AD Q+PD+ +Q A+DWAC  GGADC  IQ  QPCF PNTV+DHAS  FN YYQ++K 
Sbjct: 15 WCVADGQIPDNVIQAAVDWACQTGGADCSTIQPNQPCFLPNTVKDHASVVFNNYYQRYKR 74

Query: 61 KGATCYFNSAAMVTALDPS 80
           G +C FNS A +T  DPS
Sbjct: 75 NGGSCNFNSTAFITQTDPS 93

[Close]

BLAST of MS002907.1 vs. TAIR 10
Match: AT4G29360.2 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-23
Identity = 48/84 (57.14%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIA  Q    ELQ ALDWACG G  DC  +Q  QPCF P+TV  HASYAFNTYYQ+   
Sbjct: 391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGA 450

Query: 61  KGATCYFNSAAMVTALDPSKYLIT 85
               C FN A++    DPSKYL T
Sbjct: 451 SSIDCSFNGASVEVDKDPSKYLYT 474

[Close]

BLAST of MS002907.1 vs. TAIR 10
Match: AT4G29360.1 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-21
Identity = 44/79 (55.70%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1   WCIADEQVPDDELQRALDWACGKGGADCRKIQVKQPCFYPNTVRDHASYAFNTYYQKFKH 60
           WCIA  Q    ELQ ALDWACG G  DC  +Q  QPCF P+TV  HASYAFNTYYQ+   
Sbjct: 391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGA 450

Query: 61  KGATCYFNSAAMVTALDPS 80
               C FN A++    DPS
Sbjct: 451 SSIDCSFNGASVEVDKDPS 469

The following BLAST results are available for this feature:

BLAST of MS002907.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142612.1	3.8e-41	100.00	PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like [Momordica charantia]	[more]
XP_038895406.1	9.3e-40	96.20	PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like [Benincasa hispida]	[more]
XP_011654946.1	2.1e-39	94.94	PLASMODESMATA CALLOSE-BINDING PROTEIN 5 [Cucumis sativus] >XP_031738418.1 PLASMO...	[more]
KAE8637357.1	2.1e-39	94.94	hypothetical protein CSA_011907 [Cucumis sativus]	[more]
XP_008463607.1	2.3e-38	92.41	PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like [Cucumis melo]	[more]

BLAST of MS002907.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYE5	5.0e-20	55.70	Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana OX=3702 GN=At4g29360...	[more]
Q94CD8	1.9e-19	51.90	Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 ...	[more]
O65399	3.0e-17	49.37	Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 ...	[more]
Q9FJU9	1.2e-16	45.57	Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana OX=3702 GN=At5g56590...	[more]
Q9M2K6	4.4e-16	46.25	PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana OX=3702 GN=PDCB5...	[more]

BLAST of MS002907.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNC5	1.8e-41	100.00	PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0LW57	1.0e-39	94.94	X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G181450 PE=4 SV=...	[more]
A0A1S3CJN7	1.1e-38	92.41	PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1EBZ4	4.2e-38	92.41	PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HUR1	6.1e-37	89.87	PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of MS002907.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35740.1	8.1e-34	75.00	Carbohydrate-binding X8 domain superfamily protein	[more]
AT2G04910.1	2.3e-28	60.98	Carbohydrate-binding X8 domain superfamily protein	[more]
AT2G04910.2	1.9e-27	60.76	Carbohydrate-binding X8 domain superfamily protein	[more]
AT4G29360.2	1.7e-23	57.14	O-Glycosyl hydrolases family 17 protein	[more]
AT4G29360.1	3.6e-21	55.70	O-Glycosyl hydrolases family 17 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 1..81 e-value: 1.6E-37 score: 140.6
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 1..72 e-value: 2.7E-21 score: 76.0
None	No IPR available	GENE3D	1.20.58.1040		coord: 1..85 e-value: 4.6E-11 score: 45.0
None	No IPR available	PANTHER	PTHR31044:SF35	CARBOHYDRATE-BINDING X8 DOMAIN SUPERFAMILY PROTEIN	coord: 1..80
IPR044788	Carbohydrate-binding X8 domain-containing protein, plant	PANTHER	PTHR31044	BETA-1,3 GLUCANASE	coord: 1..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002907	MS002907	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002907.1-cds	MS002907.1-cds-scaffold359:582897..583166	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002907.1	MS002907.1-protein	polypeptide