MS002905.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002905.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytosolic Fe-S cluster assembly factor NAR1
Location	scaffold359: 570175 .. 570566 (-)
Sequence length	195
RNA-Seq Expression	MS002905.1
Synteny	MS002905.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGAAGTTCTCGGCAACTTTGAGGATAGGGGATCTGAATGATTTCATAGCGCCTTCCCAGGCTTGTATAGTTTCTCTCAAAGGGCTGAAAGCTACAACCACGAAGCCGGATAAAGTTGAGGTATTTCTTCGATTTGAATACCTGTTGTTGCCAAAGTTGCTGCTCTCGGTATCGTTTTTTATGGTTATTTGCGTTGATTTTGATTTCTTCCCTAATTTAAGTAATCATTAGGAAGAAGCACGCGTAAAAATGAGTCATTCTTTTAGAAGTTTTCTATTAGTTGATTTGTCGTTTTTGTTTCTGCGTATATTATTTAGGTTTCGGCTTCTAGGAAGCAATTGAAAGCAGAACCAGTTAAGATTTCACTGAAGGATTGCTTAGCATGC

mRNA sequence

ATGTCTGAGAAGTTCTCGGCAACTTTGAGGATAGGGGATCTGAATGATTTCATAGCGCCTTCCCAGGCTTGTATAGTTTCTCTCAAAGGGCTGAAAGCTACAACCACGAAGCCGGATAAAGTTGAGGTTTCGGCTTCTAGGAAGCAATTGAAAGCAGAACCAGTTAAGATTTCACTGAAGGATTGCTTAGCATGC

Coding sequence (CDS)

ATGTCTGAGAAGTTCTCGGCAACTTTGAGGATAGGGGATCTGAATGATTTCATAGCGCCTTCCCAGGCTTGTATAGTTTCTCTCAAAGGGCTGAAAGCTACAACCACGAAGCCGGATAAAGTTGAGGTTTCGGCTTCTAGGAAGCAATTGAAAGCAGAACCAGTTAAGATTTCACTGAAGGATTGCTTAGCATGC

Protein sequence

MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLKDCLAC

Homology

[Close]

BLAST of MS002905.1 vs. NCBI nr
Match: XP_022142658.1 (protein NAR1 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. NCBI nr
Match: KAA0035683.1 (cytosolic Fe-S cluster assembly factor narfl [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASR QLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRMQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. NCBI nr
Match: TYK30861.1 (cytosolic Fe-S cluster assembly factor narfl [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASR QLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRMQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. NCBI nr
Match: XP_038894944.1 (protein NAR1 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 2.7e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASR QLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRMQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. NCBI nr
Match: KAG7012644.1 (Protein NAR1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.4 bits (311), Expect = 3.6e-25
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQAC+VSLKGLKATTTKPD+VEVSAS+KQLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACVVSLKGLKATTTKPDRVEVSASKKQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. ExPASy Swiss-Prot
Match: Q94CL6 (Protein NAR1 OS=Arabidopsis thaliana OX=3702 GN=NAR1 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-16
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFS TLR+GDLNDFIAPSQAC++SLK  K    K D+ +V  + KQ + EPVKISLK
Sbjct: 1  MSEKFSPTLRLGDLNDFIAPSQACVISLKDSKPIVKKSDRPQVVIAPKQ-QLEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 64

[Close]

BLAST of MS002905.1 vs. ExPASy Swiss-Prot
Match: B4GXC8 (Probable cytosolic Fe-S cluster assembly factor GL21135 OS=Drosophila persimilis OX=7234 GN=GL21135 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-05
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 4  KFSATLRIGDLNDFIAPSQACI---------VSLKGLKATTTKPDKVEVSASRKQLKAEP 63
          +FS  L++ DL+DFI PSQ CI          S  G K T  +    E S S KQ K + 
Sbjct: 3  RFSGALQLTDLDDFITPSQECIKPVTVDKTATSKTGAKITVQEDGYYEESESGKQ-KLQK 62

Query: 64 VKISLKDCLAC 66
          V+I+L+DCLAC
Sbjct: 63 VEITLQDCLAC 72

[Close]

BLAST of MS002905.1 vs. ExPASy Swiss-Prot
Match: B5DK31 (Probable cytosolic Fe-S cluster assembly factor GA29080 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA29080 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-05
Identity = 31/71 (43.66%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 4  KFSATLRIGDLNDFIAPSQACI---------VSLKGLKATTTKPDKVEVSASRKQLKAEP 63
          +FS  L++ DL+DFI PSQ CI          S  G K T  +    E S S KQ K + 
Sbjct: 3  RFSGALQLTDLDDFITPSQECIKPVTVDKTATSKTGAKITVQEDGYYEESESGKQ-KLQK 62

Query: 64 VKISLKDCLAC 66
          V+I+L+DCLAC
Sbjct: 63 VEITLQDCLAC 72

[Close]

BLAST of MS002905.1 vs. ExPASy Swiss-Prot
Match: B4JBE6 (Probable cytosolic Fe-S cluster assembly factor GH10760 OS=Drosophila grimshawi OX=7222 GN=GH10760 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-05
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 4  KFSATLRIGDLNDFIAPSQACI--------VSLKGLKATTTKPDKVEVSASRKQLKAEPV 63
          +FS  L++ DL+DFI PSQ CI         S  G K T       E S S KQ K + V
Sbjct: 3  RFSGALQLTDLDDFITPSQECIKPVTIDKTKSKTGAKITVEADGYYEESESGKQ-KLQKV 62

Query: 64 KISLKDCLAC 66
          +I+L+DCLAC
Sbjct: 63 EITLQDCLAC 71

[Close]

BLAST of MS002905.1 vs. ExPASy Swiss-Prot
Match: B4LQR5 (Probable cytosolic Fe-S cluster assembly factor GJ13047 OS=Drosophila virilis OX=7244 GN=GJ13047 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 7.3e-05
Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 4  KFSATLRIGDLNDFIAPSQACI--------VSLKGLKATTTKPDKVEVSASRKQLKAEPV 63
          +FS  L++ DL+DFI PSQ CI         S  G K T       E S S KQ K + V
Sbjct: 3  RFSGALQLTDLDDFITPSQECIKPVMIDKTKSKTGAKITVQADGYYEQSESGKQ-KLQKV 62

Query: 64 KISLKDCLAC 66
          +I+L+DCLAC
Sbjct: 63 EITLQDCLAC 71

[Close]

BLAST of MS002905.1 vs. ExPASy TrEMBL
Match: A0A6J1CNT4 (protein NAR1 OS=Momordica charantia OX=3673 GN=LOC111012714 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. ExPASy TrEMBL
Match: A0A5D3E5I9 (Cytosolic Fe-S cluster assembly factor narfl OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00610 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASR QLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRMQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. ExPASy TrEMBL
Match: A0A5A7SYM1 (Cytosolic Fe-S cluster assembly factor narfl OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003830 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASR QLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRMQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. ExPASy TrEMBL
Match: A0A6J1KFK6 (protein NAR1-like OS=Cucurbita maxima OX=3661 GN=LOC111495356 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLND+IAPSQACIVSLKGLKAT+TKPDKVEVSASRKQLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDYIAPSQACIVSLKGLKATSTKPDKVEVSASRKQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. ExPASy TrEMBL
Match: A0A6J1EEW4 (LOW QUALITY PROTEIN: protein NAR1-like OS=Cucurbita moschata OX=3662 GN=LOC111432623 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFSATLRIGDLNDFIAPSQAC+VSLKGLKATTTKPD+VEVSAS+KQLKAEPVKISLK
Sbjct: 1  MSEKFSATLRIGDLNDFIAPSQACVVSLKGLKATTTKPDRVEVSASKKQLKAEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 65

[Close]

BLAST of MS002905.1 vs. TAIR 10
Match: AT4G16440.1 (ferredoxin hydrogenases )

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-17
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MSEKFSATLRIGDLNDFIAPSQACIVSLKGLKATTTKPDKVEVSASRKQLKAEPVKISLK 60
          MSEKFS TLR+GDLNDFIAPSQAC++SLK  K    K D+ +V  + KQ + EPVKISLK
Sbjct: 1  MSEKFSPTLRLGDLNDFIAPSQACVISLKDSKPIVKKSDRPQVVIAPKQ-QLEPVKISLK 60

Query: 61 DCLAC 66
          DCLAC
Sbjct: 61 DCLAC 64

The following BLAST results are available for this feature:

BLAST of MS002905.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142658.1	5.5e-26	100.00	protein NAR1 [Momordica charantia]	[more]
KAA0035683.1	2.7e-25	98.46	cytosolic Fe-S cluster assembly factor narfl [Cucumis melo var. makuwa]	[more]
TYK30861.1	2.7e-25	98.46	cytosolic Fe-S cluster assembly factor narfl [Cucumis melo var. makuwa]	[more]
XP_038894944.1	2.7e-25	98.46	protein NAR1 [Benincasa hispida]	[more]
KAG7012644.1	3.6e-25	95.38	Protein NAR1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS002905.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CL6	4.1e-16	67.69	Protein NAR1 OS=Arabidopsis thaliana OX=3702 GN=NAR1 PE=1 SV=1	[more]
B4GXC8	3.3e-05	43.66	Probable cytosolic Fe-S cluster assembly factor GL21135 OS=Drosophila persimilis...	[more]
B5DK31	3.3e-05	43.66	Probable cytosolic Fe-S cluster assembly factor GA29080 OS=Drosophila pseudoobsc...	[more]
B4JBE6	7.3e-05	44.29	Probable cytosolic Fe-S cluster assembly factor GH10760 OS=Drosophila grimshawi ...	[more]
B4LQR5	7.3e-05	44.29	Probable cytosolic Fe-S cluster assembly factor GJ13047 OS=Drosophila virilis OX...	[more]

BLAST of MS002905.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNT4	2.7e-26	100.00	protein NAR1 OS=Momordica charantia OX=3673 GN=LOC111012714 PE=3 SV=1	[more]
A0A5D3E5I9	1.3e-25	98.46	Cytosolic Fe-S cluster assembly factor narfl OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A5A7SYM1	1.3e-25	98.46	Cytosolic Fe-S cluster assembly factor narfl OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1KFK6	1.7e-25	96.92	protein NAR1-like OS=Cucurbita maxima OX=3661 GN=LOC111495356 PE=3 SV=1	[more]
A0A6J1EEW4	1.7e-25	95.38	LOW QUALITY PROTEIN: protein NAR1-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of MS002905.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16440.1	2.9e-17	67.69	ferredoxin hydrogenases	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002905	MS002905	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002905.1-cds	MS002905.1-cds-scaffold359:570175..570243	CDS
MS002905.1-cds	MS002905.1-cds-scaffold359:570441..570566	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002905.1	MS002905.1-protein	polypeptide