MS002867.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS002867.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II reaction center protein I
Location	scaffold359: 320351 .. 320461 (+)
Sequence length	111
RNA-Seq Expression	MS002867.1
Synteny	MS002867.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACGGTAGTAATATTCTATGTTTCTCTCTTCATTCTCGAATTCCTATATAATGACTTGAGACGTAATCCGAGACGT

mRNA sequence

GATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACGGTAGTAATATTCTATGTTTCTCTCTTCATTCTCGAATTCCTATATAATGACTTGAGACGTAATCCGAGACGT

Coding sequence (CDS)

GATTGTGTAATGCTTACTCTCAAACTATTTGTTTATACGGTAGTAATATTCTATGTTTCTCTCTTCATTCTCGAATTCCTATATAATGACTTGAGACGTAATCCGAGACGT

Protein sequence

DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR

Homology

[Close]

BLAST of MS002867.1 vs. NCBI nr
Match: TYJ42623.1 (hypothetical protein E1A91_A03G101000v1 [Gossypium mustelinum])

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          DCVMLTLKLFVYTVVIF+VSLFI  FL ND  RNPRR
Sbjct: 20 DCVMLTLKLFVYTVVIFFVSLFIFRFLSNDPGRNPRR 56

[Close]

BLAST of MS002867.1 vs. NCBI nr
Match: TYG95339.1 (hypothetical protein ES288_A11G260200v1 [Gossypium darwinii] >TYJ11049.1 hypothetical protein E1A91_A11G248900v1 [Gossypium mustelinum])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          DCVMLTLKLFVYTVVIF+VSLFI  FL ND  RNPRR
Sbjct: 20 DCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPRR 56

[Close]

BLAST of MS002867.1 vs. NCBI nr
Match: TYG76217.1 (hypothetical protein ES288_D03G096600v1 [Gossypium darwinii])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1   DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
           DCVMLT+KLFVYTVVIF+VSLFI  FL NDL RNP R
Sbjct: 78  DCVMLTIKLFVYTVVIFFVSLFIFRFLSNDLGRNPGR 114

[Close]

BLAST of MS002867.1 vs. NCBI nr
Match: KAB2037665.1 (hypothetical protein ES319_D03G092000v1 [Gossypium barbadense] >TYG76219.1 hypothetical protein ES288_D03G096800v1 [Gossypium darwinii])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          DCVMLTLKLFVYTVVIF+VSLFI  FL ND RRNP R
Sbjct: 20 DCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGR 56

[Close]

BLAST of MS002867.1 vs. NCBI nr
Match: KAB2037607.1 (hypothetical protein ES319_D03G086200v1 [Gossypium barbadense] >TYG76183.1 hypothetical protein ES288_D03G093200v1 [Gossypium darwinii])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1   DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
           DCVMLTLKLFVYTVVIF+VSLFI  FL ND RRNP R
Sbjct: 78  DCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGR 114

[Close]

BLAST of MS002867.1 vs. ExPASy Swiss-Prot
Match: Q85CN1 (Photosystem II reaction center protein I OS=Anthoceros angustus OX=48387 GN=psbI PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 4  MLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          MLTLKLFVYTVVIF+VSLF+  FL ND +RNP R
Sbjct: 1  MLTLKLFVYTVVIFFVSLFVFGFLSNDPKRNPGR 34

[Close]

BLAST of MS002867.1 vs. ExPASy Swiss-Prot
Match: Q19V93 (Photosystem II reaction center protein I OS=Chlorokybus atmophyticus OX=3144 GN=psbI PE=3 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-05
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 4  MLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          MLTLK+FVYTVVIF+VSLFI  FL ND  RNP+R
Sbjct: 1  MLTLKIFVYTVVIFFVSLFIFGFLSNDPARNPKR 34

[Close]

BLAST of MS002867.1 vs. ExPASy Swiss-Prot
Match: A8W3A8 (Photosystem II reaction center protein I OS=Cuscuta exaltata OX=476139 GN=psbI PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-05
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 4  MLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          M TLKLFVYTVVIF+VSLFI  FL ND RRNP R
Sbjct: 1  MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGR 34

[Close]

BLAST of MS002867.1 vs. ExPASy Swiss-Prot
Match: A7M950 (Photosystem II reaction center protein I OS=Cuscuta reflexa OX=4129 GN=psbI PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-05
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 4  MLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          M TLKLFVYTVVIF+VSLFI  FL ND RRNP R
Sbjct: 1  MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGR 34

[Close]

BLAST of MS002867.1 vs. ExPASy Swiss-Prot
Match: A9LYG9 (Photosystem II reaction center protein I OS=Acorus americanus OX=263995 GN=psbI PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.2e-05
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 4  MLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          MLTLKLFVYTVVIF+VSLFI  FL ND  RNP R
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 34

[Close]

BLAST of MS002867.1 vs. ExPASy TrEMBL
Match: A0A5D2ZXF1 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A03G101000v1 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-06
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          DCVMLTLKLFVYTVVIF+VSLFI  FL ND  RNPRR
Sbjct: 20 DCVMLTLKLFVYTVVIFFVSLFIFRFLSNDPGRNPRR 56

[Close]

BLAST of MS002867.1 vs. ExPASy TrEMBL
Match: A0A5J5S2R2 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G086200v1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1   DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
           DCVMLTLKLFVYTVVIF+VSLFI  FL ND RRNP R
Sbjct: 78  DCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGR 114

[Close]

BLAST of MS002867.1 vs. ExPASy TrEMBL
Match: A0A5J5S2A4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G092000v1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          DCVMLTLKLFVYTVVIF+VSLFI  FL ND RRNP R
Sbjct: 20 DCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGR 56

[Close]

BLAST of MS002867.1 vs. ExPASy TrEMBL
Match: A0A5D2D7B2 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D03G093200v1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1   DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
           DCVMLTLKLFVYTVVIF+VSLFI  FL ND RRNP R
Sbjct: 78  DCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGR 114

[Close]

BLAST of MS002867.1 vs. ExPASy TrEMBL
Match: A0A5D2EQE4 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A11G260200v1 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  DCVMLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          DCVMLTLKLFVYTVVIF+VSLFI  FL ND  RNPRR
Sbjct: 20 DCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPRR 56

[Close]

BLAST of MS002867.1 vs. TAIR 10
Match: ATCG00080.1 (photosystem II reaction center protein I )

HSP 1 Score: 47.8 bits (112), Expect = 2.3e-06
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 4  MLTLKLFVYTVVIFYVSLFILEFLYNDLRRNPRR 38
          MLTLKLFVYTVVIF+VSLFI  FL ND  RNP R
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR 34

The following BLAST results are available for this feature:

BLAST of MS002867.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ42623.1	1.8e-05	83.78	hypothetical protein E1A91_A03G101000v1 [Gossypium mustelinum]	[more]
TYG95339.1	3.1e-05	83.78	hypothetical protein ES288_A11G260200v1 [Gossypium darwinii] >TYJ11049.1 hypothe...	[more]
TYG76217.1	3.1e-05	81.08	hypothetical protein ES288_D03G096600v1 [Gossypium darwinii]	[more]
KAB2037665.1	3.1e-05	83.78	hypothetical protein ES319_D03G092000v1 [Gossypium barbadense] >TYG76219.1 hypot...	[more]
KAB2037607.1	3.1e-05	83.78	hypothetical protein ES319_D03G086200v1 [Gossypium barbadense] >TYG76183.1 hypot...	[more]

BLAST of MS002867.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q85CN1	1.4e-05	76.47	Photosystem II reaction center protein I OS=Anthoceros angustus OX=48387 GN=psbI...	[more]
Q19V93	1.4e-05	76.47	Photosystem II reaction center protein I OS=Chlorokybus atmophyticus OX=3144 GN=...	[more]
A8W3A8	1.4e-05	79.41	Photosystem II reaction center protein I OS=Cuscuta exaltata OX=476139 GN=psbI P...	[more]
A7M950	1.4e-05	79.41	Photosystem II reaction center protein I OS=Cuscuta reflexa OX=4129 GN=psbI PE=3...	[more]
A9LYG9	3.2e-05	79.41	Photosystem II reaction center protein I OS=Acorus americanus OX=263995 GN=psbI ...	[more]

BLAST of MS002867.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2ZXF1	8.7e-06	83.78	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A03G101000v1 P...	[more]
A0A5J5S2R2	1.5e-05	83.78	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G086200v1 PE...	[more]
A0A5J5S2A4	1.5e-05	83.78	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D03G092000v1 PE...	[more]
A0A5D2D7B2	1.5e-05	83.78	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D03G093200v1 PE=...	[more]
A0A5D2EQE4	1.5e-05	83.78	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A11G260200v1 PE=...	[more]

BLAST of MS002867.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00080.1	2.3e-06	79.41	photosystem II reaction center protein I	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003686	Photosystem II PsbI	PFAM	PF02532	PsbI	coord: 4..37 e-value: 4.2E-14 score: 52.2
IPR003686	Photosystem II PsbI	PANTHER	PTHR35772	PHOTOSYSTEM II REACTION CENTER PROTEIN I	coord: 1..37
None	No IPR available	PANTHER	PTHR35772:SF1	PHOTOSYSTEM II REACTION CENTER PROTEIN I	coord: 1..37
IPR037271	Photosystem II PsbI superfamily	SUPERFAMILY	161041	Photosystem II reaction center protein I, PsbI	coord: 4..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS002867	MS002867	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS002867.1-cds	MS002867.1-cds-scaffold359:320351..320461	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS002867.1	MS002867.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009539	photosystem II reaction center