MS001270.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001270.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	PsbP domain-containing protein
Location	scaffold36: 2840950 .. 2844842 (-)
Sequence length	888
RNA-Seq Expression	MS001270.1
Synteny	MS001270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTTCTCCATTCCTCTTTATCTGTTTCTACTCCCACCAACGCTTCTCTTGCAAATCTACCCTTCTTCAGGTTCTATCTCTTTAATTTTTTATTCTCTTGTACTCACTAATTGACTCTTATCCATTGAAACTTGTTCATAATCTATTCCAACTCGCAGAAAGCGACCCACAAGCTTGCTCTGTCATGAAAAAATTGAAATGTACAAGAAATTCAATCTCTGTTCAAGTTCTAGCTCAAAACCCACCTCAGAAAATGGACTTTGCAGGAGGGATTTGATTCTATTTGGGCTTTCTTCTTCATTTGTTCTGACATTTCCATCTTCGGGTCAGTTTTTCTTGCTGTGAGCTACTTATTACTGCTTCTCGTTCGTTAGGAAATGCCACCATAGGTTTAATCTATGAAGTTTGTAATGGAGTAGCTTAAGCTACGAGATGGGAGGGGCTTCTTTTTCTTTTTAAGCCCTTAAATATTTTTGCTGTGAATGATGAAGGTCAGCCTTTATATTCAGGTTCGCTTGCAGAGGAAGAGTTGAAAGTTGCTACAATGGCTGACCAAATAAATGCTTATTCTTATAGTTATCCGGTGGAATTGCCATCTACTAATTTCGCCTTCAAATGGTAGAGATTTATATTTCCTTACAACAAAGTTTTTATTAATTAAGTGAAAATACAGATTGTTCTGAAGCATATGAATGCTATATTTGACCCTACAAGAATCTGTTGACTCGGAAAATGTGACCTGAATCTGTCAATTGAGTAGGTATTAATTTATTTTTGGATGGGCAAAACATCTGTCAATTGAGTATGTATTAATTTATTTCTAGAACAGATGTTTCAGGCAGTCAAATACAGGTTTTTAAAGGTTTTTCACTTGGAATGAGACTTTTAAGTGCAAGCCTAGACCAAGAATGAGTCTTCTTTGTTGCTGAGCATGTGTCTGTGATCTAAATTTGAAAGATTAGCATTGAATTTAGAGTGCCGTTATCTATGAAGGAGGAAATTTAAGTTCACTAGCAATCTATAGCCATTTATAACTAATGAAATGAAGATCTAAGTTTTTTTCTTTCTTTCTTTGAGTGCTGCTGACCTTTGGGTTTCACTTTTCTTGTCCTATTGAATTCTTTTTGACATTTACTTGTACCTTTTTTTTTCCTCCTCATTATTGTCTCATGTCCTTAAATTGTATTGTACCCAACTCTTTCTATCTTTTCAAGGGTGGAATCAAGAAAACCAGAACGCTATTCTTCTGCTGCTCCGTTGTCTCGTAAGTTTTAACTTATGTTGCACCACCCTAGAATTGAAACATAATTTGTTCTTTGAGCTGTTTGAAATGCAAGCAACTTTTGAAAATTTGTTCTGCACGATAAAAGAATGATGAAACTCTACTGTTTGGTTTTTATTTTTGCCAAATGTTTTAAGTCATCAAAGGATCATTGGGAGAGCTTCTTTTCGATTTCGAATTATTTAGCAAAATGGATCCTGGAATGCAGATTTTTTTAATATTAACTTCGTGCTGTTTTCACATGTCATAGCTGATGCACGATTGAGGATTGTCTCCGAGAGAGTTGATTTCATTGACAACCTTGTCATTTCGGTTACGGTAATTTCTTATTCAATTGAACAATTATTTTCTTTTCTCTTTTTAGGTTGATAGTTTTTATCGGCTTTTTTGTTTCAGATAGGCCCTCCAAATTCCATGTTCATAAAATCAAAGGACAAGAGTACTTGGTCAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCCGCATTGGTAATTGCTTTCATGCTTTTTACCCGAAAAATCTTTGGACCGAGATGCTGTTCATGGTGACTTTCCTCTAGATTATTTGAAGCAATCTCAGTTTTTTCCAAGATAAAAATTCCTTTTTCACTAGATGGAATTAACAGGACATAAAGCCTGAGGAACAGGTTTATGCAGGCATGTAGAAGATGCCTTGGAAAAATGCTAAACTTTTCCTTCTAAAGTTCATTAAAATCCATGTTCTAAATGGTAAATTTGAAGTCGGATTTTTCGTTTATCTTGCAGCGGGTCACTTCAAGTCAGCGCCTGGCTGAGAGTTCAGTTCTTGATACTCATTCTAGTAATGTAAGTAAACTACATAGTCCTATTATTAGTTCTTGATACTCATTATTTGTAGGGTGCAAATCTTTCTCTATATGGCATGCTTTTGTATGTATCTATGGAGGATTTCTAATAGTTCATTCTCAGATTGATGGTGAGCCATACTGGTATTATGAATACCTTGTTCGAAAGTCGCCAACAAAAATCGTAAGTCTCGACTTCTTTATTTCCATCTTCCCCTGAGAAGACATTTCAAGTATTTGATTTTTGAGGAATTAAATGAATCCTGCAGGTTGGAGAATCCAACATTTACAGGCATTATGTTGCATCAACAGCCGAACGAGACGGTAAGCTGTCGATTTTTCAGTCTGCATTCATTGTCATAGAAATTGTGGATGACTATTACAATTTATTTTTTGATACCACTAGGGTATAGGGTGTTCATTCCTTGCATTATGCTTATTGCCAACCCCTAGGTTCGATCCAAAAGACAACAAAAGTTTTTAAGTCTATGTTTTGTTGGTGATCCGAAAACAGAGGATCGCGTTTTCAATGTTTTCGAATATGTGTTTGGTATCAGGTTTAGAAATTGAATTCCAATTTTAAAAACAGTTCAAATATGTGTTTAGTAATGTATTTATAAACTAGTGATAGTTATCAACTAAATAATTAGCTCAATCTAAAATATTATTATTTAATTTATTAACATATATATTATAAATTTTGTATAATTATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCTGTGTTTTACCTGTTTTAGTTTTAAAAAAAATGGAATGAGTTACAACTTGAAATAGTACATTTATCAAGTTTTTATCATTTTTAATATGTAATTTTTCATTTTAATGTTTCAAATTTAAATCTGAAAATACTAATAAAAGTATTATTTTTAGAATTTTCACTGTTTGGAACACAAAATTCAAAAACAGTTTTCAAATACTAATGTGTCAGATATCCATTGAATCTATTTGATTCAAGTGAATTTGAAAATAAGAAACAGAATTCAGATTGCACATCAAACAAGTCCTAGATTTAGGAGTTTGAATCCAAAATCTTGGAGGATATATTGGGCATCATTCCTTGCATCATGCATATGACCCACTCTCTAGAAGCTTCACCCACCCTAAGATTCGCTACGAGAGAGAGACAACAGAAGTTTCAAGTCATTAAGTTTTCAACATAAAAACTGAAACCGAACCTACGATCTTCGAAGGTATATCTAAACATCCCAAGTTACGACCAATGAAGCAAAGTAGTGAGTATATTACAACTGGAAAATGGGAAAGAAGAAAAAATAAGTGATACCTCTAATATTGGTGATTTTGTTTTGGCTCATCCAAGTTTTAGTAGGTAGCTGAGAAAAGTTGTATAAGAAGTTATTTGTTTGTTCAACTGGATGTTGGTCTTAAGTTTCAATGAAAAACGAGGCTACCAATAATTCTTCAATTTGCAGGTTTTCTGTATTCTATTAGTGCTTCGACCCTCGGTGCGCAATGGAACGCAGTAAGCTCTCCTGCTCTCTATATGGAATTTTATGATCTTTCTTGTGCAGAATTCAGTGCCTAATTACCTACAAAATGTCTCTTTATGGGCAGATGGGACCTTTCCTGCAGAAAACCGTAGAGTCGTTTCGCCTTCTTCCTCCGACCGAGGACTATGTTCCTCCATACAAGGATCCATGGAGATTTTGG

mRNA sequence

ATGGCGCTTCTCCATTCCTCTTTATCTGTTTCTACTCCCACCAACGCTTCTCTTGCAAATCTACCCTTCTTCAGAAAGCGACCCACAAGCTTGCTCTGTCATGAAAAAATTGAAATGTACAAGAAATTCAATCTCTGTTCAAGTTCTAGCTCAAAACCCACCTCAGAAAATGGACTTTGCAGGAGGGATTTGATTCTATTTGGGCTTTCTTCTTCATTTGTTCTGACATTTCCATCTTCGGGTTCGCTTGCAGAGGAAGAGTTGAAAGTTGCTACAATGGCTGACCAAATAAATGCTTATTCTTATAGTTATCCGGTGGAATTGCCATCTACTAATTTCGCCTTCAAATGGGTGGAATCAAGAAAACCAGAACGCTATTCTTCTGCTGCTCCGTTGTCTCCTGATGCACGATTGAGGATTGTCTCCGAGAGAGTTGATTTCATTGACAACCTTGTCATTTCGGTTACGATAGGCCCTCCAAATTCCATGTTCATAAAATCAAAGGACAAGAGTACTTGGTCAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCCGCATTGCGGGTCACTTCAAGTCAGCGCCTGGCTGAGAGTTCAGTTCTTGATACTCATTCTAGTAATATTGATGGTGAGCCATACTGGTATTATGAATACCTTGTTCGAAAGTCGCCAACAAAAATCGTTGGAGAATCCAACATTTACAGGCATTATGTTGCATCAACAGCCGAACGAGACGGTTTTCTGTATTCTATTAGTGCTTCGACCCTCGGTGCGCAATGGAACGCAATGGGACCTTTCCTGCAGAAAACCGTAGAGTCGTTTCGCCTTCTTCCTCCGACCGAGGACTATGTTCCTCCATACAAGGATCCATGGAGATTTTGG

Coding sequence (CDS)

ATGGCGCTTCTCCATTCCTCTTTATCTGTTTCTACTCCCACCAACGCTTCTCTTGCAAATCTACCCTTCTTCAGAAAGCGACCCACAAGCTTGCTCTGTCATGAAAAAATTGAAATGTACAAGAAATTCAATCTCTGTTCAAGTTCTAGCTCAAAACCCACCTCAGAAAATGGACTTTGCAGGAGGGATTTGATTCTATTTGGGCTTTCTTCTTCATTTGTTCTGACATTTCCATCTTCGGGTTCGCTTGCAGAGGAAGAGTTGAAAGTTGCTACAATGGCTGACCAAATAAATGCTTATTCTTATAGTTATCCGGTGGAATTGCCATCTACTAATTTCGCCTTCAAATGGGTGGAATCAAGAAAACCAGAACGCTATTCTTCTGCTGCTCCGTTGTCTCCTGATGCACGATTGAGGATTGTCTCCGAGAGAGTTGATTTCATTGACAACCTTGTCATTTCGGTTACGATAGGCCCTCCAAATTCCATGTTCATAAAATCAAAGGACAAGAGTACTTGGTCAGCAAAAGATGTTGCAGACTCTGTTTTATCCGACAAATCCGCATTGCGGGTCACTTCAAGTCAGCGCCTGGCTGAGAGTTCAGTTCTTGATACTCATTCTAGTAATATTGATGGTGAGCCATACTGGTATTATGAATACCTTGTTCGAAAGTCGCCAACAAAAATCGTTGGAGAATCCAACATTTACAGGCATTATGTTGCATCAACAGCCGAACGAGACGGTTTTCTGTATTCTATTAGTGCTTCGACCCTCGGTGCGCAATGGAACGCAATGGGACCTTTCCTGCAGAAAACCGTAGAGTCGTTTCGCCTTCTTCCTCCGACCGAGGACTATGTTCCTCCATACAAGGATCCATGGAGATTTTGG

Protein sequence

MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLCRRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVESRKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVADSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYVASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW

Homology

[Close]

BLAST of MS001270.1 vs. NCBI nr
Match: XP_022131385.1 (psbP domain-containing protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 584.3 bits (1505), Expect = 5.8e-163
Identity = 294/296 (99.32%), Postives = 295/296 (99.66%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCH+KIEMYKKFNLCSSSSSKPTSENGLC
Sbjct: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHKKIEMYKKFNLCSSSSSKPTSENGLC 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES
Sbjct: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLYSISASTLGAQWNAMGPFLQK VESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKIVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. NCBI nr
Match: XP_038884128.1 (psbP domain-containing protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 541.2 bits (1393), Expect = 5.6e-150
Identity = 269/296 (90.88%), Postives = 283/296 (95.61%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLSVSTPTNAS  NLPFFR RP +L C ++IEMYKKFNLCS+S SKPTSENG C
Sbjct: 1   MALLNSSLSVSTPTNASPPNLPFFRNRPRNLPCRKRIEMYKKFNLCSTSISKPTSENGFC 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDL+LFGLSSSFVL+FPSS SLAEEELK ATM D+INAYSY+YPVEL S+NFAFKWVES
Sbjct: 61  RRDLLLFGLSSSFVLSFPSSDSLAEEELKAATMVDEINAYSYTYPVELSSSNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNL+ISVTIGPPNSM+IKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLYSI+ASTLGAQWN MGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYSINASTLGAQWNKMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. NCBI nr
Match: XP_023545350.1 (psbP domain-containing protein 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 521.9 bits (1343), Expect = 3.5e-144
Identity = 262/296 (88.51%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLSVSTPTNASL NL FF  RP +L   + I +YKKFNLCS+S SK TSEN   
Sbjct: 1   MALLNSSLSVSTPTNASLPNLSFFSNRPGNLPSRKIIGIYKKFNLCSTSISKSTSENVFS 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDL+LFGLSSSFVLTFPS GSLAEEELK ATM D++NAYSY YP+ELPSTNFAFKWVES
Sbjct: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEELKAATMVDEVNAYSYIYPLELPSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDF+DNL+ISVTIGPPNSM+IKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFVDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLYSI+ASTLGAQWN+MGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYSINASTLGAQWNSMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. NCBI nr
Match: XP_004138754.1 (psbP domain-containing protein 5, chloroplastic [Cucumis sativus] >KGN63133.2 hypothetical protein Csa_022037 [Cucumis sativus])

HSP 1 Score: 520.8 bits (1340), Expect = 7.8e-144
Identity = 258/296 (87.16%), Postives = 279/296 (94.26%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLSVST TN SL NLPFFR +P +L C ++I MYKKFN+CS+S SKPTSENGL 
Sbjct: 1   MALLNSSLSVSTSTNVSLPNLPFFRNQPKNLPCRKRIGMYKKFNVCSTSISKPTSENGLS 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDL+LFGL+SS  L+FPS GSLAEEELK ATM D+INAYSY+YP+EL STNFAFKWVES
Sbjct: 61  RRDLLLFGLTSSVALSFPSLGSLAEEELKAATMVDEINAYSYTYPLELSSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNL+ISVTIGPPNS+FIKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIFIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQR+AESSVLDT+SSNIDGEPYWY+EYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRMAESSVLDTNSSNIDGEPYWYFEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLY+I+ASTLGAQWN MGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYTINASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. NCBI nr
Match: XP_022997451.1 (psbP domain-containing protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 520.4 bits (1339), Expect = 1.0e-143
Identity = 262/296 (88.51%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLS STPTNASL NL FFR RP  L   + I MYKKFNLCS+S SK TS N   
Sbjct: 1   MALLNSSLSFSTPTNASLPNLSFFRNRPRDLPSRKIIGMYKKFNLCSTSISKSTSGNVFS 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDL+LFGLSSSFVLTFPS GSLAEEELK ATM D++NAYSY YP+ELPSTNF+FKWVES
Sbjct: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEELKAATMVDEVNAYSYIYPLELPSTNFSFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNL+ISVTIGPPNSM+IKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLYSI+ASTLGAQWN+MGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYSINASTLGAQWNSMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. ExPASy Swiss-Prot
Match: P82715 (PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD5 PE=1 SV=3)

HSP 1 Score: 361.3 bits (926), Expect = 1.0e-98
Identity = 180/257 (70.04%), Postives = 207/257 (80.54%), Query Frame = 0


Query: 49  SSSKPTSENGLCRRDLILFGLSSSFVLTFPSSG---------SLAEEELKVATMADQINA 108
           S+   +SE GL RRDL+L GLSS   +  P S           ++ EELK+ TM D INA
Sbjct: 42  STRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINA 101

Query: 109 YSYSYPVELPSTNFAFKWVESRKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGP 168
           YSY+YP++ PS    FKWVESRKPERYSSAAPLSPDARLRIVSERVD  DNLVIS++IGP
Sbjct: 102 YSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGP 161

Query: 169 PNSMFIKSKDKSTWSAKDVADSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYE 228
           PNS  + SK+K TWSAK+VADSVLSDKSALRVTSSQRL ESSVLD H+S+IDGEPYWYYE
Sbjct: 162 PNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYE 221

Query: 229 YLVRKSPTKIVGESNIYRHYVASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLL 288
           YLVRKSPTKI   S +YRHY++STAERDG+LY+I+ASTLG QW+ MGP L++ V SFRLL
Sbjct: 222 YLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLL 281

Query: 289 PPTEDYVPPYKDPWRFW 297
           PPT+ YVPPYKDPWRFW
Sbjct: 282 PPTDSYVPPYKDPWRFW 297

[Close]

BLAST of MS001270.1 vs. ExPASy TrEMBL
Match: A0A6J1BPK2 (psbP domain-containing protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004620 PE=4 SV=1)

HSP 1 Score: 584.3 bits (1505), Expect = 2.8e-163
Identity = 294/296 (99.32%), Postives = 295/296 (99.66%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCH+KIEMYKKFNLCSSSSSKPTSENGLC
Sbjct: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHKKIEMYKKFNLCSSSSSKPTSENGLC 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES
Sbjct: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLYSISASTLGAQWNAMGPFLQK VESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKIVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. ExPASy TrEMBL
Match: A0A6J1K7I1 (psbP domain-containing protein 5, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492364 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 5.0e-144
Identity = 262/296 (88.51%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLS STPTNASL NL FFR RP  L   + I MYKKFNLCS+S SK TS N   
Sbjct: 1   MALLNSSLSFSTPTNASLPNLSFFRNRPRDLPSRKIIGMYKKFNLCSTSISKSTSGNVFS 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDL+LFGLSSSFVLTFPS GSLAEEELK ATM D++NAYSY YP+ELPSTNF+FKWVES
Sbjct: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEELKAATMVDEVNAYSYIYPLELPSTNFSFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNL+ISVTIGPPNSM+IKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLYSI+ASTLGAQWN+MGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYSINASTLGAQWNSMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. ExPASy TrEMBL
Match: A0A6J1EN40 (psbP domain-containing protein 5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436116 PE=4 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 4.2e-143
Identity = 260/296 (87.84%), Postives = 276/296 (93.24%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLSVSTPTNASL NL FF  RP +L   + I MYKK +LCS+S SK TSEN   
Sbjct: 1   MALLNSSLSVSTPTNASLPNLSFFSNRPRNLPSRKIIGMYKKLSLCSTSISKSTSENVFS 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RRDL+LFGLSSSFVLTFPS GSLAEE+LK ATM D++NAYSY YP+ELPSTNFAFKWVES
Sbjct: 61  RRDLLLFGLSSSFVLTFPSLGSLAEEQLKAATMVDEVNAYSYIYPLELPSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNL+ISVTIGPPNSM+IKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSMYIKSKDKSTWTAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLYSI+ASTLGAQWN+MGPFLQ+TVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYSINASTLGAQWNSMGPFLQQTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. ExPASy TrEMBL
Match: A0A1S4DWE4 (psbP domain-containing protein 5, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488254 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 6.1e-142
Identity = 256/296 (86.49%), Postives = 276/296 (93.24%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLSVST TNASL NLPFFR +P +L C ++I MY KFNLCS+  SKPTSE+G  
Sbjct: 1   MALLYSSLSVSTSTNASLPNLPFFRNQPKNLPCRKRIGMYTKFNLCSTPISKPTSEDGFP 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RR+L+LFGL+SS  L FPS GSLAEEELK ATM D+INAYSY+YPVEL STNFAFKWVES
Sbjct: 61  RRELLLFGLTSSVALFFPSLGSLAEEELKSATMVDEINAYSYTYPVELSSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNL+ISVTIGPPNS++IKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIISVTIGPPNSIYIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQR+AESSVLDT+SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRMAESSVLDTNSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLY+I+ASTLGAQWN MGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYTINASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 296

[Close]

BLAST of MS001270.1 vs. ExPASy TrEMBL
Match: A0A1S4DVK9 (psbP domain-containing protein 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488254 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.2e-139
Identity = 254/296 (85.81%), Postives = 274/296 (92.57%), Query Frame = 0


Query: 1   MALLHSSLSVSTPTNASLANLPFFRKRPTSLLCHEKIEMYKKFNLCSSSSSKPTSENGLC 60
           MALL+SSLSVST TNASL NLPFFR +P +L C ++I MY KFNLCS+  SKPTSE+G  
Sbjct: 1   MALLYSSLSVSTSTNASLPNLPFFRNQPKNLPCRKRIGMYTKFNLCSTPISKPTSEDGFP 60

Query: 61  RRDLILFGLSSSFVLTFPSSGSLAEEELKVATMADQINAYSYSYPVELPSTNFAFKWVES 120
           RR+L+LFGL+SS  L FPS GSLAEEELK ATM D+INAYSY+YPVEL STNFAFKWVES
Sbjct: 61  RRELLLFGLTSSVALFFPSLGSLAEEELKSATMVDEINAYSYTYPVELSSTNFAFKWVES 120

Query: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGPPNSMFIKSKDKSTWSAKDVAD 180
           RKPERYSSAAPLSPDARLRIVSERVDFIDNL+IS  IGPPNS++IKSKDKSTW+AKDVAD
Sbjct: 121 RKPERYSSAAPLSPDARLRIVSERVDFIDNLIIS--IGPPNSIYIKSKDKSTWAAKDVAD 180

Query: 181 SVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240
           SVLSDKSALRVTSSQR+AESSVLDT+SSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV
Sbjct: 181 SVLSDKSALRVTSSQRMAESSVLDTNSSNIDGEPYWYYEYLVRKSPTKIVGESNIYRHYV 240

Query: 241 ASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 297
           ASTAERDGFLY+I+ASTLGAQWN MGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW
Sbjct: 241 ASTAERDGFLYTINASTLGAQWNTMGPFLQKTVESFRLLPPTEDYVPPYKDPWRFW 294

[Close]

BLAST of MS001270.1 vs. TAIR 10
Match: AT5G11450.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 361.3 bits (926), Expect = 7.4e-100
Identity = 180/257 (70.04%), Postives = 207/257 (80.54%), Query Frame = 0


Query: 49  SSSKPTSENGLCRRDLILFGLSSSFVLTFPSSG---------SLAEEELKVATMADQINA 108
           S+   +SE GL RRDL+L GLSS   +  P S           ++ EELK+ TM D INA
Sbjct: 42  STRSISSEKGLSRRDLVLIGLSSPLSMFLPLSSPVTHAEEDVKMSGEELKMGTMVDDINA 101

Query: 109 YSYSYPVELPSTNFAFKWVESRKPERYSSAAPLSPDARLRIVSERVDFIDNLVISVTIGP 168
           YSY+YP++ PS    FKWVESRKPERYSSAAPLSPDARLRIVSERVD  DNLVIS++IGP
Sbjct: 102 YSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVDLTDNLVISISIGP 161

Query: 169 PNSMFIKSKDKSTWSAKDVADSVLSDKSALRVTSSQRLAESSVLDTHSSNIDGEPYWYYE 228
           PNS  + SK+K TWSAK+VADSVLSDKSALRVTSSQRL ESSVLD H+S+IDGEPYWYYE
Sbjct: 162 PNSR-LTSKEKKTWSAKEVADSVLSDKSALRVTSSQRLEESSVLDAHASDIDGEPYWYYE 221

Query: 229 YLVRKSPTKIVGESNIYRHYVASTAERDGFLYSISASTLGAQWNAMGPFLQKTVESFRLL 288
           YLVRKSPTKI   S +YRHY++STAERDG+LY+I+ASTLG QW+ MGP L++ V SFRLL
Sbjct: 222 YLVRKSPTKIAEASKLYRHYISSTAERDGYLYTINASTLGKQWDKMGPVLERAVGSFRLL 281

Query: 289 PPTEDYVPPYKDPWRFW 297
           PPT+ YVPPYKDPWRFW
Sbjct: 282 PPTDSYVPPYKDPWRFW 297

The following BLAST results are available for this feature:

BLAST of MS001270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131385.1	5.8e-163	99.32	psbP domain-containing protein 5, chloroplastic [Momordica charantia]	[more]
XP_038884128.1	5.6e-150	90.88	psbP domain-containing protein 5, chloroplastic [Benincasa hispida]	[more]
XP_023545350.1	3.5e-144	88.51	psbP domain-containing protein 5, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_004138754.1	7.8e-144	87.16	psbP domain-containing protein 5, chloroplastic [Cucumis sativus] >KGN63133.2 hy...	[more]
XP_022997451.1	1.0e-143	88.51	psbP domain-containing protein 5, chloroplastic [Cucurbita maxima]	[more]

BLAST of MS001270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82715	1.0e-98	70.04	PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MS001270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BPK2	2.8e-163	99.32	psbP domain-containing protein 5, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A6J1K7I1	5.0e-144	88.51	psbP domain-containing protein 5, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EN40	4.2e-143	87.84	psbP domain-containing protein 5, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S4DWE4	6.1e-142	86.49	psbP domain-containing protein 5, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S4DVK9	2.2e-139	85.81	psbP domain-containing protein 5, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]

BLAST of MS001270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11450.1	7.4e-100	70.04	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 170..277 e-value: 5.9E-11 score: 42.7
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 79..278 e-value: 2.2E-22 score: 81.7
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 31..296
None	No IPR available	PANTHER	PTHR31407:SF7	PSBP DOMAIN-CONTAINING PROTEIN 5, CHLOROPLASTIC	coord: 31..296
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 92..278

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001270	MS001270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001270.1-cds	MS001270.1-cds-scaffold36:2840950..2841045	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2841138..2841187	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2842403..2842457	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2842543..2842602	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2842726..2842785	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2843062..2843160	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2843239..2843306	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2843575..2843624	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2844221..2844329	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2844514..2844680	CDS
MS001270.1-cds	MS001270.1-cds-scaffold36:2844769..2844842	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001270.1	MS001270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding