MS001112.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001112.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type E3 ubiquitin transferase
Location	scaffold36: 1517236 .. 1518099 (+)
Sequence length	864
RNA-Seq Expression	MS001112.1
Synteny	MS001112.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCACAATTAGCAGAAAACTCTTCCCTTCTACAACTAACTGTTCAGGCTGCCCCTACGACTGTCCTTTCGATTGCTACACTTTTCCAGACTTCGACTACTCGCCGCCGCCGCCGCCGCCTCACCAAAATCAAGCCCTTCAACCTTTCATCGTCGTCGTAATCGCTCTCTCCGTCGGGTTCTTCGTCGCTTTGAACTTCTACATGGTCGTCGTAAAGTGCCGTGGCCCCCGGAACTCGGGGGCGGCGGCCTCCCAATCCGACGGCGGAGAGGGAGAGTTACTGGACCGAAATCAAGTGGATCATCCAATTTGGTTCATCAACACCGTCGGCCTGCATCAATCCATCATCAATTCCATTGCGGTGTGCAAATTCAAGCAGGGGGAGGGTCTGATCGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAATTTCGACAAGGCGAGATGCTTAGATTGCTGCCCAAATGTAGCCATGCCTTTCATATTGGATGTGTAGACACTTGGCTCAGGTCTCACACCACTTGCCCTCTCTGTCGAGCCCTTATACTCACGGATTTGGGTGCGAGGCCCCCCAATTTGGGTTCTGTGAATCAGATCGAGGCTAATTCGGGCGGAAATGAGGAGACCCAGATGGAGAATGGGGAGATTAATGGCGAAGTTGTGGGGGAAAATCAGGCTGTTGTTGCTGTTTCTGATGGGAGCTTGGAGAACAGGGGAGAAGTTGTTGATGAACAGAGAGAAGTTGTTGTTCAGGTTGGGGAGATTGTTCCAAAAGAGGGGATTACTGAATCTGTTCAGAATCATGGAGTTGAAGGAAATGAGATTCTGATGAATAATCAGATGGATTCTTCTTCTGCTGAG

mRNA sequence

ATGGCGCTCACAATTAGCAGAAAACTCTTCCCTTCTACAACTAACTGTTCAGGCTGCCCCTACGACTGTCCTTTCGATTGCTACACTTTTCCAGACTTCGACTACTCGCCGCCGCCGCCGCCGCCTCACCAAAATCAAGCCCTTCAACCTTTCATCGTCGTCGTAATCGCTCTCTCCGTCGGGTTCTTCGTCGCTTTGAACTTCTACATGGTCGTCGTAAAGTGCCGTGGCCCCCGGAACTCGGGGGCGGCGGCCTCCCAATCCGACGGCGGAGAGGGAGAGTTACTGGACCGAAATCAAGTGGATCATCCAATTTGGTTCATCAACACCGTCGGCCTGCATCAATCCATCATCAATTCCATTGCGGTGTGCAAATTCAAGCAGGGGGAGGGTCTGATCGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAATTTCGACAAGGCGAGATGCTTAGATTGCTGCCCAAATGTAGCCATGCCTTTCATATTGGATGTGTAGACACTTGGCTCAGGTCTCACACCACTTGCCCTCTCTGTCGAGCCCTTATACTCACGGATTTGGGTGCGAGGCCCCCCAATTTGGGTTCTGTGAATCAGATCGAGGCTAATTCGGGCGGAAATGAGGAGACCCAGATGGAGAATGGGGAGATTAATGGCGAAGTTGTGGGGGAAAATCAGGCTGTTGTTGCTGTTTCTGATGGGAGCTTGGAGAACAGGGGAGAAGTTGTTGATGAACAGAGAGAAGTTGTTGTTCAGGTTGGGGAGATTGTTCCAAAAGAGGGGATTACTGAATCTGTTCAGAATCATGGAGTTGAAGGAAATGAGATTCTGATGAATAATCAGATGGATTCTTCTTCTGCTGAG

Coding sequence (CDS)

ATGGCGCTCACAATTAGCAGAAAACTCTTCCCTTCTACAACTAACTGTTCAGGCTGCCCCTACGACTGTCCTTTCGATTGCTACACTTTTCCAGACTTCGACTACTCGCCGCCGCCGCCGCCGCCTCACCAAAATCAAGCCCTTCAACCTTTCATCGTCGTCGTAATCGCTCTCTCCGTCGGGTTCTTCGTCGCTTTGAACTTCTACATGGTCGTCGTAAAGTGCCGTGGCCCCCGGAACTCGGGGGCGGCGGCCTCCCAATCCGACGGCGGAGAGGGAGAGTTACTGGACCGAAATCAAGTGGATCATCCAATTTGGTTCATCAACACCGTCGGCCTGCATCAATCCATCATCAATTCCATTGCGGTGTGCAAATTCAAGCAGGGGGAGGGTCTGATCGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAATTTCGACAAGGCGAGATGCTTAGATTGCTGCCCAAATGTAGCCATGCCTTTCATATTGGATGTGTAGACACTTGGCTCAGGTCTCACACCACTTGCCCTCTCTGTCGAGCCCTTATACTCACGGATTTGGGTGCGAGGCCCCCCAATTTGGGTTCTGTGAATCAGATCGAGGCTAATTCGGGCGGAAATGAGGAGACCCAGATGGAGAATGGGGAGATTAATGGCGAAGTTGTGGGGGAAAATCAGGCTGTTGTTGCTGTTTCTGATGGGAGCTTGGAGAACAGGGGAGAAGTTGTTGATGAACAGAGAGAAGTTGTTGTTCAGGTTGGGGAGATTGTTCCAAAAGAGGGGATTACTGAATCTGTTCAGAATCATGGAGTTGAAGGAAATGAGATTCTGATGAATAATCAGATGGATTCTTCTTCTGCTGAG

Protein sequence

MALTISRKLFPSTTNCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSVGFFVALNFYMVVVKCRGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVSDGSLENRGEVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILMNNQMDSSSAE

Homology

[Close]

BLAST of MS001112.1 vs. NCBI nr
Match: XP_022132045.1 (RING-H2 finger protein ATL54-like [Momordica charantia])

HSP 1 Score: 575.1 bits (1481), Expect = 3.4e-160
Identity = 284/288 (98.61%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MALTISRKLFPSTTNCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSV 60
           MALTISRKLFPSTTNCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSV
Sbjct: 52  MALTISRKLFPSTTNCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSV 111

Query: 61  GFFVALNFYMVVVKCRGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQSIINS 120
           GFF ALNFYMVVVKCRGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQSIINS
Sbjct: 112 GFFAALNFYMVVVKCRGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQSIINS 171

Query: 121 IAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCR 180
           IA CKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCR
Sbjct: 172 IAACKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCR 231

Query: 181 ALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVSDGSLENRG 240
           ALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVS GSLENRG
Sbjct: 232 ALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVSGGSLENRG 291

Query: 241 EVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILMNNQMDSSSAE 289
           EVVDEQREVVVQVGEIVPKEGITES QNHGVEGNEILMNNQMDSSSAE
Sbjct: 292 EVVDEQREVVVQVGEIVPKEGITESDQNHGVEGNEILMNNQMDSSSAE 339

[Close]

BLAST of MS001112.1 vs. NCBI nr
Match: XP_038884462.1 (RING-H2 finger protein ATL54-like [Benincasa hispida])

HSP 1 Score: 375.9 bits (964), Expect = 3.0e-100
Identity = 202/306 (66.01%), Postives = 227/306 (74.18%), Query Frame = 0


Query: 1   MALTISRKLFP-------STTNCSGCPYDCPFDCYTFPDFDYSPPPPPP----HQNQALQ 60
           MA+TISRKLFP        TTNCSGCPYDCPFDCY  PDF YS PPPPP    HQ Q   
Sbjct: 1   MAVTISRKLFPVATGTTQPTTNCSGCPYDCPFDCYGIPDFYYSQPPPPPPLADHQKQL-- 60

Query: 61  PFIVVVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPI 120
           P +++++ L VGFF+A +FY++VVKCR    G  N G  A QSDGGEGE ++ NQVDHPI
Sbjct: 61  PTLIIILLLFVGFFIAFSFYIIVVKCRSWQSGSGNEGTEALQSDGGEGEFMNENQVDHPI 120

Query: 121 WFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 180
           WFI T GL QS+INSI VCK+K+ EGLIEGTECSVCLSEF++ EMLRLLPKCSHAFHIGC
Sbjct: 121 WFITTAGLQQSVINSITVCKYKKSEGLIEGTECSVCLSEFQEDEMLRLLPKCSHAFHIGC 180

Query: 181 VDTWLRSHTTCPLCRALILTDLGA----RPPNLGSVNQIEANSGGNEETQMENGEINGEV 240
           VDTWLR+HTTCPLCRA ILTD  A    RPPNLG VNQ EAN G NEETQMEN EINGEV
Sbjct: 181 VDTWLRTHTTCPLCRAHILTDFTASNSVRPPNLGPVNQNEANLGVNEETQMENEEINGEV 240

Query: 241 VGENQAVVAVSDGSLENRGEVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILMNNQ 288
           + EN+ V  VS G+ ENRG+VVDEQREV           GI ++  +  VEGNE   NNQ
Sbjct: 241 LVENEGV--VSRGNFENRGDVVDEQREV-----------GIVQT-DDSKVEGNESTRNNQ 290

[Close]

BLAST of MS001112.1 vs. NCBI nr
Match: XP_008444871.1 (PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo] >KAA0065127.1 RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 5.0e-95
Identity = 197/309 (63.75%), Postives = 224/309 (72.49%), Query Frame = 0


Query: 1   MALTISRKLFP-------STTNCSGCPYDCPFDCYTFPDFDYSPPPPPP----HQNQALQ 60
           MA+T SRKLFP        TTNCS CPYDCP+DCY FPD  +SPPPPPP    HQ Q   
Sbjct: 1   MAVTHSRKLFPVATGTTQPTTNCSACPYDCPYDCYGFPDLYFSPPPPPPPLFDHQKQL-- 60

Query: 61  PFIVVVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPI 120
           P +++V+ L V FF+A  FY++VVKCR    G  N GA A QSDGGEGE ++ NQVDHPI
Sbjct: 61  PTMIIVLILFVAFFIAFTFYIIVVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDHPI 120

Query: 121 WFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 180
           WFI T GL QS+INSI VCK+K+ EGLIEGT+CSVCLSEF++ EMLRLLPKCSHAFHIGC
Sbjct: 121 WFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGC 180

Query: 181 VDTWLRSHTTCPLCRALILTDL------GARPPNLGSVNQIEANSGGNEETQMENGEING 240
           VDTWLR+HTTCPLCRA ILTD         RPPNLG +NQ E N G NE+TQMEN  ING
Sbjct: 181 VDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENING 240

Query: 241 EVVGENQ-AVVAVSDGSLENRGEVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILM 287
           E V EN+  VV++S  S ENRG+VVDEQRE    V EIV KEG  ES  +  VEGNE   
Sbjct: 241 EAVRENEGGVVSISSESSENRGDVVDEQRE----VEEIVQKEGNFES-DDSKVEGNESTR 300

[Close]

BLAST of MS001112.1 vs. NCBI nr
Match: XP_011649673.1 (RING-H2 finger protein ATL54 [Cucumis sativus] >KGN62717.1 hypothetical protein Csa_022380 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 5.5e-94
Identity = 192/307 (62.54%), Postives = 222/307 (72.31%), Query Frame = 0


Query: 1   MALTISRKLFP-------STTNCSGCPYDCPFDCYTFPDFDYSPPPPPP----HQNQALQ 60
           MA+T+SRKLFP        TTNCS CPYDCP+DCY FPD  +SPPPPPP    HQ Q   
Sbjct: 1   MAVTLSRKLFPVATGTALPTTNCSACPYDCPYDCYGFPDLYFSPPPPPPPLSDHQKQL-- 60

Query: 61  PFIVVVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPI 120
           P  ++++ L + FFVA  FY++VVKCR    G  N GA A QSDGGEGE ++ NQVDHPI
Sbjct: 61  PTTIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDHPI 120

Query: 121 WFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 180
           WFI T GL QS+INSI VCK+K+ EGLIEGT+CSVCLSEF++ EMLRLLPKCSHAFHIGC
Sbjct: 121 WFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGC 180

Query: 181 VDTWLRSHTTCPLCRALILTDL----GARPPNLGSVNQIEANSGGNEETQMENGEINGEV 240
           VDTWLR+HTTCPLCRA ILTD       RPPN+G +NQ E N G NE+TQMEN   N E 
Sbjct: 181 VDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMENENTNREA 240

Query: 241 VGENQ-AVVAVSDGSLENRGEVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILMN- 287
           V EN+   V++S  S ENRG+ VDEQRE    V EIV KEG  ES  +  VEGNE + N 
Sbjct: 241 VRENEGGGVSISSESSENRGDAVDEQRE----VEEIVQKEGNFES-DDSKVEGNESMRND 300

[Close]

BLAST of MS001112.1 vs. NCBI nr
Match: XP_022997232.1 (RING-H2 finger protein ATL54-like [Cucurbita maxima])

HSP 1 Score: 335.5 bits (859), Expect = 4.5e-88
Identity = 181/295 (61.36%), Postives = 212/295 (71.86%), Query Frame = 0


Query: 1   MALTISRKLFPSTT-------NCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIV 60
           MA+ I+RKLFP  T       NCSGCPYDCPFDC   PDF +SPPPP     + L   ++
Sbjct: 1   MAVGITRKLFPVETGTHQQSFNCSGCPYDCPFDCLDLPDFYFSPPPPFGDHQKQLPTIVI 60

Query: 61  VVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPIWFIN 120
           V++AL VGFF   +FY+++VK +    G  N GA ASQ DG +GE L+ NQVDHPIWFI 
Sbjct: 61  VILALFVGFFFTFSFYIIIVKWQAWRSGSGNQGAEASQLDGEDGEFLNENQVDHPIWFIT 120

Query: 121 TVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTW 180
           TVGL QSIINSI VCK+K+GEGLIEGT CSVCL+EF++ EMLRLLPKCSHAFHIGCVDTW
Sbjct: 121 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 180

Query: 181 LRSHTTCPLCRALILTDLGA----RPPNLGSVNQIEANSGGNEETQMENGEINGEVVGEN 240
           LR+HTTCPLCRA ILTD       RPPN G VNQ EAN    EETQMEN E      GE 
Sbjct: 181 LRTHTTCPLCRAHILTDFATSNFPRPPNSGHVNQNEANLAVIEETQMENLE------GEE 240

Query: 241 QAVVAVSDGSLENRGEVVDEQREV-VVQVGEIVPKEGITESVQNHGVEGNEILMN 280
           Q+ V+   G +ENRG+ VDEQR+V V Q+GEIVPKEG+ ES  +  +E NE +MN
Sbjct: 241 QSAVS-GGGGVENRGDAVDEQRDVGVPQIGEIVPKEGVFES-DDSKMEVNETMMN 287

[Close]

BLAST of MS001112.1 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 8.2e-40
Identity = 110/277 (39.71%), Postives = 135/277 (48.74%), Query Frame = 0


Query: 1   MALTISRKLFPS-------TTNCSG--CPYDCPFDCYTFPD-FDYSPPPPP----PHQNQ 60
           MA    RKLFP+       T +CS   C   CP++CY  PD +  SP  PP    P  + 
Sbjct: 1   MARKKHRKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSP 60

Query: 61  ALQPFI------------------------VVVIALSVGFFVALNFYMVVVKCRGPRNSG 120
              P I                         V+  L  GFF+   F+   V      N G
Sbjct: 61  CPSPSISAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSV---NRVNQG 120

Query: 121 AAASQSDGG----EGELLDRNQVDHPIWFINTVGLHQSIINSIAVCKFKQGEGLIEGTEC 180
              S ++      E E  DR QVDHPIW I T GL QSIINSI +C +K+G+GLIE T+C
Sbjct: 121 TYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDC 180

Query: 181 SVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRALILTDLGARPPNLGSVN 236
            VCL+EF + E LRLLPKC+HAFHI C+DTWL SHT CPLCRA I       P   G V 
Sbjct: 181 PVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVE 240

[Close]

BLAST of MS001112.1 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.3e-36
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 0


Query: 37  PPPPPPHQNQALQPFIVVVIALSVGFFVALNFYMVVVKCRGPRNSGAAASQSDGG----E 96
           PPPPPP +   L P  + V+  S+  F+ L F++ +   +  R S A+ +  D      E
Sbjct: 30  PPPPPPRELSLLLPTSICVVG-SIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQEDE 89

Query: 97  GELLDRNQVD-HPIWFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEML 156
            E  +R+  D H +W I TVGLH+S INSI V  FK+GEG+I+GTECSVCL+EF + E L
Sbjct: 90  DETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESL 149

Query: 157 RLLPKCSHAFHIGCVDTWLRSHTTCPLCRALILTDLGARPPN 194
           RLLPKCSHAFH+ C+DTWL SH  CPLCRA +L  L   PP+
Sbjct: 150 RLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL--LITEPPH 188

[Close]

BLAST of MS001112.1 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 5.0e-29
Identity = 91/265 (34.34%), Postives = 125/265 (47.17%), Query Frame = 0


Query: 10  FPSTTNCSG--CPYDCPFDCYTFPDFDYSPPPP--------PPHQNQALQPFIVVVIALS 69
           +  T +CS   C   CP  CY    F + PPPP                 P ++ +I + 
Sbjct: 11  YEPTRDCSQGLCSMYCPQWCY----FIFPPPPPFDVAGTSADDSSGPVFSPLVIAIIGVL 70

Query: 70  VGFFVALNFYMVVVKCRGP----------RNSGAAASQSDGGEGELLDRNQV-DHPIWFI 129
              F+ +++Y  + K  G            +SG AA     G G      Q   H  W +
Sbjct: 71  ASAFLLVSYYTFISKYCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNV 130

Query: 130 N-TVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVD 189
           +   GL +++IN I VCK+++G+G +  T+CSVCL EF  GE LRLLP+CSHAFH  C+D
Sbjct: 131 SPPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCID 190

Query: 190 TWLRSHTTCPLCRA-LILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGEN- 249
           TWL+SH+ CPLCRA +    +G   P                      G   GE  G+N 
Sbjct: 191 TWLKSHSNCPLCRANITFVTVGLASPE-------------------PEGCAPGETGGDNT 248

Query: 250 QAVVAVSDGSLENRGEVVDEQREVV 251
             VV V DG LEN   + +EQ+E V
Sbjct: 251 HEVVVVMDG-LEN---LCEEQQEAV 248

[Close]

BLAST of MS001112.1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-28
Identity = 86/266 (32.33%), Postives = 138/266 (51.88%), Query Frame = 0


Query: 10  FPSTTNCSG--CPYDCPFDCYTFPDFDYSPPPPP--------PHQNQALQPFIVVVIALS 69
           + S  +CS   C   CP  CY        PPPPP           + +  P ++ +I + 
Sbjct: 11  YDSYNDCSQGICNIYCPQWCYLI-----FPPPPPSFFLDDDSSSSSSSFSPLLIALIGIL 70

Query: 70  VGFFVALNFYMVVVK-C--RGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQS 129
               + +++Y ++ K C      +S    + +  GEG      ++       N  GL++S
Sbjct: 71  TSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRIS-----TNGDGLNES 130

Query: 130 IINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTC 189
           +I SI V K+K G+G ++G++CSVCLSEF + E LRLLPKC+HAFH+ C+DTWL+SH+ C
Sbjct: 131 MIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNC 190

Query: 190 PLCRALILTDLGARPPNLG-SVNQIEANSGGNEETQMENGEINGEVVG-ENQ-----AVV 249
           PLCRA + T +     ++G +V+ + AN   +        EIN  + G E+Q     +VV
Sbjct: 191 PLCRAFV-TGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVV 250

[Close]

BLAST of MS001112.1 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-25
Identity = 85/263 (32.32%), Postives = 130/263 (49.43%), Query Frame = 0


Query: 10  FPSTTNCSG--CPYDCPFDCYTFPDFDYSPPPP-------PPHQNQALQPFIVVVIALSV 69
           + S  +CS   C   CP  CY        PPPP           +    P ++ +I +  
Sbjct: 14  YDSYRDCSQGVCSVYCPQWCYVI-----FPPPPSFYLDDEDDSSSSDFSPLLIALIGILA 73

Query: 70  GFFVALNFYMVVVK-CRGPRNSGAAASQS-----------DGGEGELLDRNQVDHPIWFI 129
             F+ +++Y ++ K C   R++ ++ S +            G      + N   +P   I
Sbjct: 74  SAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNN--NNNGATNPNQTI 133

Query: 130 ---NTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 189
                 GL +S+I SI V K+++ +G +E ++CSVCLSEF++ E LRLLPKC+HAFH+ C
Sbjct: 134 GGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPC 193

Query: 190 VDTWLRSHTTCPLCRALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGEN 246
           +DTWL+SH+ CPLCRA I+T            + +E     N++   EN  I+    G++
Sbjct: 194 IDTWLKSHSNCPLCRAFIVTS-----------SAVEIVDLTNQQIVTENNSIS---TGDD 253

[Close]

BLAST of MS001112.1 vs. ExPASy TrEMBL
Match: A0A6J1BRC8 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111005011 PE=3 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.6e-160
Identity = 284/288 (98.61%), Postives = 284/288 (98.61%), Query Frame = 0


Query: 1   MALTISRKLFPSTTNCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSV 60
           MALTISRKLFPSTTNCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSV
Sbjct: 52  MALTISRKLFPSTTNCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSV 111

Query: 61  GFFVALNFYMVVVKCRGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQSIINS 120
           GFF ALNFYMVVVKCRGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQSIINS
Sbjct: 112 GFFAALNFYMVVVKCRGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQSIINS 171

Query: 121 IAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCR 180
           IA CKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCR
Sbjct: 172 IAACKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCR 231

Query: 181 ALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVSDGSLENRG 240
           ALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVS GSLENRG
Sbjct: 232 ALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVSGGSLENRG 291

Query: 241 EVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILMNNQMDSSSAE 289
           EVVDEQREVVVQVGEIVPKEGITES QNHGVEGNEILMNNQMDSSSAE
Sbjct: 292 EVVDEQREVVVQVGEIVPKEGITESDQNHGVEGNEILMNNQMDSSSAE 339

[Close]

BLAST of MS001112.1 vs. ExPASy TrEMBL
Match: A0A5A7VDK2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004620 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.4e-95
Identity = 197/309 (63.75%), Postives = 224/309 (72.49%), Query Frame = 0


Query: 1   MALTISRKLFP-------STTNCSGCPYDCPFDCYTFPDFDYSPPPPPP----HQNQALQ 60
           MA+T SRKLFP        TTNCS CPYDCP+DCY FPD  +SPPPPPP    HQ Q   
Sbjct: 1   MAVTHSRKLFPVATGTTQPTTNCSACPYDCPYDCYGFPDLYFSPPPPPPPLFDHQKQL-- 60

Query: 61  PFIVVVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPI 120
           P +++V+ L V FF+A  FY++VVKCR    G  N GA A QSDGGEGE ++ NQVDHPI
Sbjct: 61  PTMIIVLILFVAFFIAFTFYIIVVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDHPI 120

Query: 121 WFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 180
           WFI T GL QS+INSI VCK+K+ EGLIEGT+CSVCLSEF++ EMLRLLPKCSHAFHIGC
Sbjct: 121 WFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGC 180

Query: 181 VDTWLRSHTTCPLCRALILTDL------GARPPNLGSVNQIEANSGGNEETQMENGEING 240
           VDTWLR+HTTCPLCRA ILTD         RPPNLG +NQ E N G NE+TQMEN  ING
Sbjct: 181 VDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENING 240

Query: 241 EVVGENQ-AVVAVSDGSLENRGEVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILM 287
           E V EN+  VV++S  S ENRG+VVDEQRE    V EIV KEG  ES  +  VEGNE   
Sbjct: 241 EAVRENEGGVVSISSESSENRGDVVDEQRE----VEEIVQKEGNFES-DDSKVEGNESTR 300

[Close]

BLAST of MS001112.1 vs. ExPASy TrEMBL
Match: A0A1S3BAW8 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103488086 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.4e-95
Identity = 197/309 (63.75%), Postives = 224/309 (72.49%), Query Frame = 0


Query: 1   MALTISRKLFP-------STTNCSGCPYDCPFDCYTFPDFDYSPPPPPP----HQNQALQ 60
           MA+T SRKLFP        TTNCS CPYDCP+DCY FPD  +SPPPPPP    HQ Q   
Sbjct: 1   MAVTHSRKLFPVATGTTQPTTNCSACPYDCPYDCYGFPDLYFSPPPPPPPLFDHQKQL-- 60

Query: 61  PFIVVVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPI 120
           P +++V+ L V FF+A  FY++VVKCR    G  N GA A QSDGGEGE ++ NQVDHPI
Sbjct: 61  PTMIIVLILFVAFFIAFTFYIIVVKCRSWYSGSGNEGAEALQSDGGEGEFMNENQVDHPI 120

Query: 121 WFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 180
           WFI T GL QS+INSI VCK+K+ EGLIEGT+CSVCLSEF++ EMLRLLPKCSHAFHIGC
Sbjct: 121 WFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGC 180

Query: 181 VDTWLRSHTTCPLCRALILTDL------GARPPNLGSVNQIEANSGGNEETQMENGEING 240
           VDTWLR+HTTCPLCRA ILTD         RPPNLG +NQ E N G NE+TQMEN  ING
Sbjct: 181 VDTWLRTHTTCPLCRAHILTDFTTSNSNSIRPPNLGPLNQNEGNLGLNEDTQMENENING 240

Query: 241 EVVGENQ-AVVAVSDGSLENRGEVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILM 287
           E V EN+  VV++S  S ENRG+VVDEQRE    V EIV KEG  ES  +  VEGNE   
Sbjct: 241 EAVRENEGGVVSISSESSENRGDVVDEQRE----VEEIVQKEGNFES-DDSKVEGNESTR 300

[Close]

BLAST of MS001112.1 vs. ExPASy TrEMBL
Match: A0A0A0LPJ4 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.7e-94
Identity = 192/307 (62.54%), Postives = 222/307 (72.31%), Query Frame = 0


Query: 1   MALTISRKLFP-------STTNCSGCPYDCPFDCYTFPDFDYSPPPPPP----HQNQALQ 60
           MA+T+SRKLFP        TTNCS CPYDCP+DCY FPD  +SPPPPPP    HQ Q   
Sbjct: 1   MAVTLSRKLFPVATGTALPTTNCSACPYDCPYDCYGFPDLYFSPPPPPPPLSDHQKQL-- 60

Query: 61  PFIVVVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPI 120
           P  ++++ L + FFVA  FY++VVKCR    G  N GA A QSDGGEGE ++ NQVDHPI
Sbjct: 61  PTTIIILILFIAFFVAFTFYIIVVKCRSWYSGSANEGAEALQSDGGEGEFMNENQVDHPI 120

Query: 121 WFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 180
           WFI T GL QS+INSI VCK+K+ EGLIEGT+CSVCLSEF++ EMLRLLPKCSHAFHIGC
Sbjct: 121 WFITTAGLQQSVINSITVCKYKKSEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGC 180

Query: 181 VDTWLRSHTTCPLCRALILTDL----GARPPNLGSVNQIEANSGGNEETQMENGEINGEV 240
           VDTWLR+HTTCPLCRA ILTD       RPPN+G +NQ E N G NE+TQMEN   N E 
Sbjct: 181 VDTWLRTHTTCPLCRAHILTDFTTPNSVRPPNIGPLNQNEGNLGLNEDTQMENENTNREA 240

Query: 241 VGENQ-AVVAVSDGSLENRGEVVDEQREVVVQVGEIVPKEGITESVQNHGVEGNEILMN- 287
           V EN+   V++S  S ENRG+ VDEQRE    V EIV KEG  ES  +  VEGNE + N 
Sbjct: 241 VRENEGGGVSISSESSENRGDAVDEQRE----VEEIVQKEGNFES-DDSKVEGNESMRND 300

[Close]

BLAST of MS001112.1 vs. ExPASy TrEMBL
Match: A0A6J1K4G1 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111492196 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.2e-88
Identity = 181/295 (61.36%), Postives = 212/295 (71.86%), Query Frame = 0


Query: 1   MALTISRKLFPSTT-------NCSGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIV 60
           MA+ I+RKLFP  T       NCSGCPYDCPFDC   PDF +SPPPP     + L   ++
Sbjct: 1   MAVGITRKLFPVETGTHQQSFNCSGCPYDCPFDCLDLPDFYFSPPPPFGDHQKQLPTIVI 60

Query: 61  VVIALSVGFFVALNFYMVVVKCR----GPRNSGAAASQSDGGEGELLDRNQVDHPIWFIN 120
           V++AL VGFF   +FY+++VK +    G  N GA ASQ DG +GE L+ NQVDHPIWFI 
Sbjct: 61  VILALFVGFFFTFSFYIIIVKWQAWRSGSGNQGAEASQLDGEDGEFLNENQVDHPIWFIT 120

Query: 121 TVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTW 180
           TVGL QSIINSI VCK+K+GEGLIEGT CSVCL+EF++ EMLRLLPKCSHAFHIGCVDTW
Sbjct: 121 TVGLQQSIINSITVCKYKKGEGLIEGTVCSVCLNEFQEDEMLRLLPKCSHAFHIGCVDTW 180

Query: 181 LRSHTTCPLCRALILTDLGA----RPPNLGSVNQIEANSGGNEETQMENGEINGEVVGEN 240
           LR+HTTCPLCRA ILTD       RPPN G VNQ EAN    EETQMEN E      GE 
Sbjct: 181 LRTHTTCPLCRAHILTDFATSNFPRPPNSGHVNQNEANLAVIEETQMENLE------GEE 240

Query: 241 QAVVAVSDGSLENRGEVVDEQREV-VVQVGEIVPKEGITESVQNHGVEGNEILMN 280
           Q+ V+   G +ENRG+ VDEQR+V V Q+GEIVPKEG+ ES  +  +E NE +MN
Sbjct: 241 QSAVS-GGGGVENRGDAVDEQRDVGVPQIGEIVPKEGVFES-DDSKMEVNETMMN 287

[Close]

BLAST of MS001112.1 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 165.6 bits (418), Expect = 5.8e-41
Identity = 110/277 (39.71%), Postives = 135/277 (48.74%), Query Frame = 0


Query: 1   MALTISRKLFPS-------TTNCSG--CPYDCPFDCYTFPD-FDYSPPPPP----PHQNQ 60
           MA    RKLFP+       T +CS   C   CP++CY  PD +  SP  PP    P  + 
Sbjct: 1   MARKKHRKLFPTLASETNKTLDCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSP 60

Query: 61  ALQPFI------------------------VVVIALSVGFFVALNFYMVVVKCRGPRNSG 120
              P I                         V+  L  GFF+   F+   V      N G
Sbjct: 61  CPSPSISAVYLPSQDSSSSLDAISIITITGAVLAILLTGFFLVAKFFSDSV---NRVNQG 120

Query: 121 AAASQSDGG----EGELLDRNQVDHPIWFINTVGLHQSIINSIAVCKFKQGEGLIEGTEC 180
              S ++      E E  DR QVDHPIW I T GL QSIINSI +C +K+G+GLIE T+C
Sbjct: 121 TYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDC 180

Query: 181 SVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRALILTDLGARPPNLGSVN 236
            VCL+EF + E LRLLPKC+HAFHI C+DTWL SHT CPLCRA I       P   G V 
Sbjct: 181 PVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVE 240

[Close]

BLAST of MS001112.1 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 6.6e-37
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 0


Query: 37  PPPPPPHQNQALQPFIVVVIALSVGFFVALNFYMVVVKCRGPRNSGAAASQSDGG----E 96
           PPPPPP +   L P  + V+  S+  F+ L F++ +   +  R S A+ +  D      E
Sbjct: 30  PPPPPPRELSLLLPTSICVVG-SIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQEDE 89

Query: 97  GELLDRNQVD-HPIWFINTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEML 156
            E  +R+  D H +W I TVGLH+S INSI V  FK+GEG+I+GTECSVCL+EF + E L
Sbjct: 90  DETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESL 149

Query: 157 RLLPKCSHAFHIGCVDTWLRSHTTCPLCRALILTDLGARPPN 194
           RLLPKCSHAFH+ C+DTWL SH  CPLCRA +L  L   PP+
Sbjct: 150 RLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVL--LITEPPH 188

[Close]

BLAST of MS001112.1 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-30
Identity = 82/227 (36.12%), Postives = 116/227 (51.10%), Query Frame = 0


Query: 17  SGCPYDCPFDCYTFPDFDYSPPPPPPHQNQALQPFIVVVIALSVGFFVALNFYMVVVKCR 76
           S C  +CP  C        SPP    H +   +  I+   ++    F+     +      
Sbjct: 91  SYCLDECPSICEIVVISGLSPPAEIHHDDNLKRILIISASSIITTLFLLTLLVLCFKFYY 150

Query: 77  GPRNSGAAASQSDGGEGELLDRNQ-----VDHPIWFINTVGLHQSIINSIAVCKFKQGEG 136
             R S   + +    E    D +      VDHPIW I T+GL+ ++I+SI VC++ + +G
Sbjct: 151 RRRRSITTSRRWSMEEARNWDFDGPAPVIVDHPIWHIRTIGLNPTVISSIKVCQYSKKDG 210

Query: 137 LIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTCPLCRALILTDLGARP 196
           ++EGT+CSVCLSEF + E LRLLPKC HAFH+ C+DTWLRSHT CPLCRA          
Sbjct: 211 VVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRA---------- 270

Query: 197 PNLGSVNQIEANSGGNEETQMENGEINGEVVGENQAVVAVSDGSLEN 239
           P + +   I+ +S G EE  +   E NG+   E   +    DG + N
Sbjct: 271 PIVEANTMIDDHSEGLEEISVMIPEENGDDTDEE--IEEERDGFVSN 305

[Close]

BLAST of MS001112.1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 2.3e-29
Identity = 86/266 (32.33%), Postives = 138/266 (51.88%), Query Frame = 0


Query: 10  FPSTTNCSG--CPYDCPFDCYTFPDFDYSPPPPP--------PHQNQALQPFIVVVIALS 69
           + S  +CS   C   CP  CY        PPPPP           + +  P ++ +I + 
Sbjct: 11  YDSYNDCSQGICNIYCPQWCYLI-----FPPPPPSFFLDDDSSSSSSSFSPLLIALIGIL 70

Query: 70  VGFFVALNFYMVVVK-C--RGPRNSGAAASQSDGGEGELLDRNQVDHPIWFINTVGLHQS 129
               + +++Y ++ K C      +S    + +  GEG      ++       N  GL++S
Sbjct: 71  TSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRIS-----TNGDGLNES 130

Query: 130 IINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGCVDTWLRSHTTC 189
           +I SI V K+K G+G ++G++CSVCLSEF + E LRLLPKC+HAFH+ C+DTWL+SH+ C
Sbjct: 131 MIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNC 190

Query: 190 PLCRALILTDLGARPPNLG-SVNQIEANSGGNEETQMENGEINGEVVG-ENQ-----AVV 249
           PLCRA + T +     ++G +V+ + AN   +        EIN  + G E+Q     +VV
Sbjct: 191 PLCRAFV-TGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVV 250

[Close]

BLAST of MS001112.1 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-26
Identity = 85/263 (32.32%), Postives = 130/263 (49.43%), Query Frame = 0


Query: 10  FPSTTNCSG--CPYDCPFDCYTFPDFDYSPPPP-------PPHQNQALQPFIVVVIALSV 69
           + S  +CS   C   CP  CY        PPPP           +    P ++ +I +  
Sbjct: 14  YDSYRDCSQGVCSVYCPQWCYVI-----FPPPPSFYLDDEDDSSSSDFSPLLIALIGILA 73

Query: 70  GFFVALNFYMVVVK-CRGPRNSGAAASQS-----------DGGEGELLDRNQVDHPIWFI 129
             F+ +++Y ++ K C   R++ ++ S +            G      + N   +P   I
Sbjct: 74  SAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNN--NNNGATNPNQTI 133

Query: 130 ---NTVGLHQSIINSIAVCKFKQGEGLIEGTECSVCLSEFRQGEMLRLLPKCSHAFHIGC 189
                 GL +S+I SI V K+++ +G +E ++CSVCLSEF++ E LRLLPKC+HAFH+ C
Sbjct: 134 GGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPC 193

Query: 190 VDTWLRSHTTCPLCRALILTDLGARPPNLGSVNQIEANSGGNEETQMENGEINGEVVGEN 246
           +DTWL+SH+ CPLCRA I+T            + +E     N++   EN  I+    G++
Sbjct: 194 IDTWLKSHSNCPLCRAFIVTS-----------SAVEIVDLTNQQIVTENNSIS---TGDD 253

The following BLAST results are available for this feature:

BLAST of MS001112.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132045.1	3.4e-160	98.61	RING-H2 finger protein ATL54-like [Momordica charantia]	[more]
XP_038884462.1	3.0e-100	66.01	RING-H2 finger protein ATL54-like [Benincasa hispida]	[more]
XP_008444871.1	5.0e-95	63.75	PREDICTED: RING-H2 finger protein ATL54-like [Cucumis melo] >KAA0065127.1 RING-H...	[more]
XP_011649673.1	5.5e-94	62.54	RING-H2 finger protein ATL54 [Cucumis sativus] >KGN62717.1 hypothetical protein ...	[more]
XP_022997232.1	4.5e-88	61.36	RING-H2 finger protein ATL54-like [Cucurbita maxima]	[more]

BLAST of MS001112.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFY8	8.2e-40	39.71	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]
Q9LX93	9.3e-36	50.00	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q7XLY8	5.0e-29	34.34	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9LF64	3.2e-28	32.33	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SRQ8	2.5e-25	32.32	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of MS001112.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRC8	1.6e-160	98.61	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11100501...	[more]
A0A5A7VDK2	2.4e-95	63.75	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S3BAW8	2.4e-95	63.75	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103488086 PE=3 ...	[more]
A0A0A0LPJ4	2.7e-94	62.54	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_2G369190 PE...	[more]
A0A6J1K4G1	2.2e-88	61.36	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111492196 P...	[more]

BLAST of MS001112.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72220.1	5.8e-41	39.71	RING/U-box superfamily protein	[more]
AT5G10380.1	6.6e-37	50.00	RING/U-box superfamily protein	[more]
AT4G33565.1	1.6e-30	36.12	RING/U-box superfamily protein	[more]
AT5G17600.1	2.3e-29	32.33	RING/U-box superfamily protein	[more]
AT3G03550.1	1.8e-26	32.32	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 138..179 e-value: 1.2E-6 score: 38.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 137..180 e-value: 3.0E-13 score: 49.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 138..180 score: 12.607302
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 113..185 e-value: 6.7E-21 score: 75.3
None	No IPR available	PANTHER	PTHR45676:SF121	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 12..261
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 137..180 e-value: 1.59889E-18 score: 75.0309
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 132..199
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 12..261

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001112	MS001112	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001112.1-cds	MS001112.1-cds-scaffold36:1517236..1518099	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001112.1	MS001112.1-protein	polypeptide