MS001061.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS001061.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold36: 1193052 .. 1193483 (-)
Sequence length	282
RNA-Seq Expression	MS001061.1
Synteny	MS001061.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCGTCGTCTTCGTCATTCTCTTCTTTCGAGAACTCTGTTTCTCGGTGGGATTTTCTTAGTTTGGTCATTTTACGCCCGATCCTGGCAGTTGTTTTCACGTTCTCCTTGATTTCTCTTGGTAATTTATTCTCCTTTCTCGTGATTATTTTGGATAATTCCTGTATTTCCGATGTCTATTTCTGCTTAGGTTTTGAAATCTAAGATTCAATTTCTATTTCTGTCATATCGATTCAATCCTGAAATTGCACTCTTAATTGGTGTCGTGGAGTAGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTTCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAGCCCGTCAGGCCGAAGCCTCCGACGCGCCGACTATCGAAGTTTTATAATAGCCGGAATTCTCAAACTTCAGCTTCTGGGTGG

mRNA sequence

ATGGAGTCGTCGTCTTCGTCATTCTCTTCTTTCGAGAACTCTGTTTCTCGGTGGGATTTTCTTAGTTTGGTCATTTTACGCCCGATCCTGGCAGTTGTTTTCACGTTCTCCTTGATTTCTCTTGTAGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTTCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAGCCCGTCAGGCCGAAGCCTCCGACGCGCCGACTATCGAAGTTTTATAATAGCCGGAATTCTCAAACTTCAGCTTCTGGGTGG

Coding sequence (CDS)

ATGGAGTCGTCGTCTTCGTCATTCTCTTCTTTCGAGAACTCTGTTTCTCGGTGGGATTTTCTTAGTTTGGTCATTTTACGCCCGATCCTGGCAGTTGTTTTCACGTTCTCCTTGATTTCTCTTGTAGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTTCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAGCCCGTCAGGCCGAAGCCTCCGACGCGCCGACTATCGAAGTTTTATAATAGCCGGAATTCTCAAACTTCAGCTTCTGGGTGG

Protein sequence

MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQEIFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASGW

Homology

[Close]

BLAST of MS001061.1 vs. NCBI nr
Match: XP_022997298.1 (uncharacterized protein LOC111492244 isoform X1 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 8.0e-34
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS+S+WD+LSL ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. NCBI nr
Match: XP_022997299.1 (uncharacterized protein LOC111492244 isoform X2 [Cucurbita maxima] >XP_022997300.1 uncharacterized protein LOC111492244 isoform X3 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 8.0e-34
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS+S+WD+LSL ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. NCBI nr
Match: XP_023545613.1 (uncharacterized protein LOC111804995 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545614.1 uncharacterized protein LOC111804995 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 82/93 (88.17%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS+S+WD+L+L ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSLSQWDYLNLFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. NCBI nr
Match: KAG7029607.1 (hypothetical protein SDJN02_07947 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-33
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS S+WD+L+L ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. NCBI nr
Match: XP_022961695.1 (uncharacterized protein LOC111462391 isoform X2 [Cucurbita moschata] >XP_022961696.1 uncharacterized protein LOC111462391 isoform X3 [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 5.2e-33
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS S+WD+L++ ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSFSQWDYLNIFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. ExPASy TrEMBL
Match: A0A6J1KB20 (uncharacterized protein LOC111492244 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492244 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.9e-34
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS+S+WD+LSL ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. ExPASy TrEMBL
Match: A0A6J1KDG2 (uncharacterized protein LOC111492244 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492244 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.9e-34
Identity = 83/93 (89.25%), Postives = 89/93 (95.70%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS+S+WD+LSL ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. ExPASy TrEMBL
Match: A0A6J1HD13 (uncharacterized protein LOC111462391 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462391 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS S+WD+L++ ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSFSQWDYLNIFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. ExPASy TrEMBL
Match: A0A6J1HES4 (uncharacterized protein LOC111462391 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462391 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 81/93 (87.10%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSFSSFENS S+WD+L++ ILRPILAVVFTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFSSFENSFSQWDYLNIFILRPILAVVFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASG 94
          IFGLRKK V+PKPPTRRLSKFYN+ +SQTSASG
Sbjct: 61 IFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

[Close]

BLAST of MS001061.1 vs. ExPASy TrEMBL
Match: A0A5A7V8X8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001200 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.5e-33
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 0


Query: 1  MESSSSSFSSFENSVSRWDFLSLVILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQE 60
          MESSSSSF SFE S+S WD+L L ILRPILA++FTFSLISL GWFLAWKLVLVHVPLVQE
Sbjct: 1  MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISL-GWFLAWKLVLVHVPLVQE 60

Query: 61 IFGLRKKPVRPKPPTRRLSKFYNSRNSQTSASGW 95
          IFGLRKKP + KPPTRRLSKFY+S NSQTSASGW
Sbjct: 61 IFGLRKKPAKSKPPTRRLSKFYDSLNSQTSASGW 93

[Close]

BLAST of MS001061.1 vs. TAIR 10
Match: AT1G36380.1 (unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-13
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 25 ILRPILAVVFTFSLISLVGWFLAWKLVLVHVPLVQEIFGLRKKPVRPKPPTR-RLSKFYN 84
          ++RP+LA+ F    I+L  WFLAWKLVL HVPLVQEIFGLRKK   PKP +R R++KFY 
Sbjct: 16 LIRPLLAISFVICFIAL-WWFLAWKLVLSHVPLVQEIFGLRKKTFIPKPESRGRIAKFYK 75

Query: 85 SRNSQ 89
          S +SQ
Sbjct: 76 SISSQ 79

The following BLAST results are available for this feature:

BLAST of MS001061.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997298.1	8.0e-34	89.25	uncharacterized protein LOC111492244 isoform X1 [Cucurbita maxima]	[more]
XP_022997299.1	8.0e-34	89.25	uncharacterized protein LOC111492244 isoform X2 [Cucurbita maxima] >XP_022997300...	[more]
XP_023545613.1	1.8e-33	88.17	uncharacterized protein LOC111804995 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
KAG7029607.1	3.0e-33	88.17	hypothetical protein SDJN02_07947 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961695.1	5.2e-33	87.10	uncharacterized protein LOC111462391 isoform X2 [Cucurbita moschata] >XP_0229616...	[more]

BLAST of MS001061.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001061.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KB20	3.9e-34	89.25	uncharacterized protein LOC111492244 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KDG2	3.9e-34	89.25	uncharacterized protein LOC111492244 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HD13	2.5e-33	87.10	uncharacterized protein LOC111462391 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HES4	2.5e-33	87.10	uncharacterized protein LOC111462391 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7V8X8	9.5e-33	84.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MS001061.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36380.1	1.3e-13	63.08	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structu...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031851	Protein of unknown function DUF4750	PFAM	PF15938	DUF4750	coord: 18..71 e-value: 5.9E-21 score: 73.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..94
None	No IPR available	PANTHER	PTHR37192	TRANSMEMBRANE PROTEIN	coord: 6..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS001061	MS001061	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS001061.1-cds	MS001061.1-cds-scaffold36:1193052..1193209	CDS
MS001061.1-cds	MS001061.1-cds-scaffold36:1193360..1193483	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS001061.1	MS001061.1-protein	polypeptide