MELO3C035495.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C035495.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr12: 18567738 .. 18567923 (+)
Sequence length	186
RNA-Seq Expression	MELO3C035495.1
Synteny	MELO3C035495.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGCGGCAAACCAAATGCGAGCGGTGGATGGCGGAGGGAGAAAACGATGATAATCTGTTGGATTGTTCGAGTGATTCGGCGACCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGACTGA

mRNA sequence

ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGCGGCAAACCAAATGCGAGCGGTGGATGGCGGAGGGAGAAAACGATGATAATCTGTTGGATTGTTCGAGTGATTCGGCGACCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGACTGA

Coding sequence (CDS)

ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGCGGCAAACCAAATGCGAGCGGTGGATGGCGGAGGGAGAAAACGATGATAATCTGTTGGATTGTTCGAGTGATTCGGCGACCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGACTGA

Protein sequence

MSASGWIVRVIRRRQTKCERWMAEGENDDNLLDCSSDSATENRIRLRSEGWEWWMAEGDDD

Homology

[Close]

BLAST of MELO3C035495.1 vs. NCBI nr
Match: KAA0031723.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 45/72 (62.50%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1  MSASGWIVRVIRRRQTKCERWMAEGENDDNLLDCSSDSATENRIRLRS-----------E 60
          MSASGWIVRVIRRR+ KCERWMAEGENDD+L           R RLRS           E
Sbjct: 1  MSASGWIVRVIRRREIKCERWMAEGENDDDL----------GRRRLRSGSGGWRRETTVE 60

Query: 61 GWEWWMAEGDDD 62
           WEWWMAEGDDD
Sbjct: 61 VWEWWMAEGDDD 62

[Close]

BLAST of MELO3C035495.1 vs. ExPASy TrEMBL
Match: A0A5A7SNB3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005110 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 45/72 (62.50%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1  MSASGWIVRVIRRRQTKCERWMAEGENDDNLLDCSSDSATENRIRLRS-----------E 60
          MSASGWIVRVIRRR+ KCERWMAEGENDD+L           R RLRS           E
Sbjct: 1  MSASGWIVRVIRRREIKCERWMAEGENDDDL----------GRRRLRSGSGGWRRETTVE 60

Query: 61 GWEWWMAEGDDD 62
           WEWWMAEGDDD
Sbjct: 61 VWEWWMAEGDDD 62

The following BLAST results are available for this feature:

BLAST of MELO3C035495.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C035495.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031723.1	2.3e-13	62.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C035495.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SNB3	1.1e-13	62.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C035495.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035495	MELO3C035495	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035495.1:exon:358417	MELO3C035495.1:exon:358417	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035495.1:cds	MELO3C035495.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035495.1	MELO3C035495.1-protein	polypeptide