MELO3C034918.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C034918.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 26383496 .. 26386473 (+)
Sequence length	1136
RNA-Seq Expression	MELO3C034918.1
Synteny	MELO3C034918.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATCTTCTTGTACATGTTTATATTTTCGATTTTTATTTGAATTACAGTTTTGGTTTGATTGGTCTCTTAATTGACTATTTTGTCTATGTTTGTGTTATATCTGTTGAAAAGTTATTACCATCTTTTGTTTCTAATGTCATATTCAATAATTTTGCTACATGAGTTGGAAAGAGATGGGGCAGCAATCACATATTGTTGTCAATAAATTCGAGGTTAGTTTGCTACATGAGTTGAATAGTTATGTTGTTTTAGATGGCTGAAACGTAAATGTGAACATGTTGTTTATGGCTGGTGGTGATCCATTCGGATCTGAATTTTTTTTCACTTTTAGTTATAAGGAACTTGAAAAATTAATGGATCATAGTTATGGATGTACTTATGTTGTATGTCTTGTTATTTGATTAAAAGAGAGGGAAAAATAAGAGGATTTCTAAAATGATGTGGTTTTCCCAAAATATTTTTATTGTACATGTGAATACTGGCAGGTTTGTAGTTTATTTACTTATTTTTGTTTGGAAATGTCTCCTACGTAGGTGCGAGACAATTTGATTCACAGGTTTCTAGATTATCATCTTGTATTAATCTTCATGTTCTAGATTCTCAGGGTCACACGATGAATGATACCATAGTTTTGAGGGCCTTAAACAGATTATTGATGTCGTGAATTGTAGGCAGATAGTGATGATGGACTCCTAATCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTTTTTTTAGTGAAGACGAGATGGATTATTATCCATACCACAATGAATTTTGTTAGATGGATACAGTATGAACAACCACGAAATTTAGTACTTGTAATCTATACATATTTCATCTTCTTGATATCCTTTTGTTGATAATTCACATTTTCTTTCTTTGCTTGCAGGTTATTCAAAGAAATAAAGGATTATGGGAGAAAAGAAAACGACATTGAGAAAAATTGAGGATTATCAAGAGATTTATCTTTACAAAATATTAGTTAGAGGTGATTTGCTTGTTTGTTTGTAGTTTATTTAGTTTTATTGATCTTTACAAAGATCCCTCATGGATCACTAAGAAGATAACTACAAAAGAGAATACGACACTCCATGTTGTTGCTGCTGCAAAGCAAATTGGTTTTGTTGAAGAGTTGGTTAAACTTTACTATAAAAAGAACACTAGTAGATTCTTATCAATTGCTATTAATGATAGAATTGTATCAGCTTATAATGTATTGGATGAAATGCCTCAGTGAAGCATTTGGTTGATTTTTAATTGATTTTTGTTTGTTCGAATTAGGAAATCAAGGCCAAGGAAGATTTCTGGCCATGGGAGGAAGTTTTGAGAAAAAGAGAATGAAAAATGAATGGTAAGATTTTAAAGTCTAATGGTGTATGGCATTGAAATAAATCGATGAAGTATTTACTTGACTACTTTGTATTACAAAGAGCTTAGAATTTAGAATCTTGGTTGTTGTGTCCTTTCTTTTTTCCTTCTTTAACATCCTTTATTGAGAGGCGATCTAGCATGGTTAATATAATTGTACCAAGCTAAACTTGATAGACACAAATCTAGAAGATATTTTTATCCTCAATCTGAGGTGCTTTTGTTAGAATTATCTCAAAGTCTTATGTTGATATTTGGGATGAAAAAGCTTGCAGGTTTTGAATTTTTTACCAACTTGGAGTCAGTAAGCATCCATTTTCGTCTTTTAGTCACTCTTATTGTTTTCTTTTTCCCTACTTTTATGTTTACCATATTCTTCTTTGACTTTACATACTGCAAGTATTAAAGAAAGAATGTTGTTGCCTTCGTCCAAAATGTTGGTTGTCTTAACTACATTAAAGAAAACGTGAGTATTAAAGGGAAGCTTGGGATTTAATCATGGGAATTTTGGTATACTAATATCAAAATTGTTTTCTATTTTTTAACCAATATATGTACTGACATGCTTTTGGCGTTCTCTTTGATTGGTGTTTTCTTTCGAAGCTATTTGGCAGTTATCTTATGCAAGATATTTGTTCAGGCTGGGACATTCTTAATTCATACCTATTTGGTTTGTTCATCTTTGATACTGATACATTTTTTCTGTTTTTTTTTTTTTTTTTTGTGGTTTTCCTTCTCTTTTTTTCTTTTTTCTTTTTTTTTCTTTGTTTCTCGATCTCATTTTATTATTTTTTTTTTATTTTATTAAGTGAGGTTTCATTTGTTTCTTGGTTGATGATCATAGTTCAGTTTTATTGCCTCATAATGGAAAGGTTGTTGAGAAAGAAAACTTTGAAGAAGCTATAAAATTAAAACTATTTTTGTTATAGTTTTAACTTGAAGTAGCAAGCCAAGAATGAATGACACTTTTGTTTTGAATTTTTAAATTTATTGCTATTTTTAGTTTATTTTTAGGTTTACTCTTGTTGATTAGCAAACCCGAGTCTCTGTTGCATAATACTTTTGTGAAAAATATGGTGTGGCACTTAAATTATGCAAAGCCCATTTATTTGCCTATGGAGGAATGTTCTTGTTCTCATAGAGTTAATATTGGTTTATATTGTAGTTCAACACTCTCAATGTGAAATTGTGAATTTTCTTTGACATTTATTGTATGCTATTGTAGTTCAAAACTTTCTATTGTAGATTACAGCTGATCGATAGTATTGATTTAAAGTGTGTAACTTATGTGTTTTTATTAGGTCTTGCACGAATCTGATCTACTATAGTGGTGAAGCTACCAAGTAAGTGATTTACATTTACACGACAATTATGAGTCTCATTTTACAACAAGTTATTGTTATGTTTAATGTTACTCTTATGAGTTTTTTTTATTATTTTTTTATTTTTTATTATCAGTTTAAATGACTTCAAAGTTTAACTGTTGCTTTGTCCATTGTGGGTGTTTGCGCTATTTCCCATCTTTATAACAAGTCTTATTCTGAGCTACAATCATCGTTTTCTTTTCTTACTAGGTTTTGCAATAATCCATGGGAG

mRNA sequence

GTATCTTCTTGTACATGTTTATATTTTCGATTTTTATTTGAATTACAGTTTTGGTTTGATTGGTCTCTTAATTGACTATTTTGTCTATGTTTGTGTTATATCTGTTGAAAAGTTATTACCATCTTTTGTTTCTAATGTCATATTCAATAATTTTGCTACATGAGTTGGAAAGAGATGGGGCAGCAATCACATATTGTTGTCAATAAATTCGAGGTTAGTTTGCTACATGAGTTGAATAGTTATGTTGTTTTAGATGGCTGAAACGTAAATGTGAACATGTTGTTTATGGCTGGTGGTGATCCATTCGGATCTGAATTTTTTTTCACTTTTAGTTATAAGGAACTTGAAAAATTAATGGATCATAGTTATGGATGTACTTATGTTGTATGTCTTGTTATTTGATTAAAAGAGAGGGAAAAATAAGAGGATTTCTAAAATGATGTGGTTTTCCCAAAATATTTTTATTGTACATGTGAATACTGGCAGGTTTGTAGTTTATTTACTTATTTTTGTTTGGAAATGTCTCCTACGTAGGTGCGAGACAATTTGATTCACAGGTTTCTAGATTATCATCTTGTATTAATCTTCATGTTCTAGATTCTCAGGGTCACACGATGAATGATACCATAGTTTTGAGGGCCTTAAACAGATTATTGATGTCGTGAATTGTAGGCAGATAGTGATGATGGACTCCTAATCTTGAAAGATATGATTGAGAACCCATTTGTGTTCTATAGCTCTTTTTTTAGTGAAGACGAGATGGATTATTATCCATACCACAATGAATTTTGTTAGATGGATACAGTATGAACAACCACGAAATTTAGTACTTGTAATCTATACATATTTCATCTTCTTGATATCCTTTTGTTGATAATTCACATTTTCTTTCTTTGCTTGCAGGTTATTCAAAGAAATAAAGGATTATGGGAGAAAAGAAAACGACATTGAGAAAAATTGAGGATTATCAAGAGATTTATCTTTACAAAATATTAGTTAGAGGAAATCAAGGCCAAGGAAGATTTCTGGCCATGGGAGGAAGTTTTGAGAAAAAGAGAATGAAAAATGAATGGTCTTGCACGAATCTGATCTACTATAGTGGTGAAGCTACCAAGTTTTGCAATAATCCATGGGAG

Coding sequence (CDS)

ATGGGAGAAAAGAAAACGACATTGAGAAAAATTGAGGATTATCAAGAGATTTATCTTTACAAAATATTAGTTAGAGGAAATCAAGGCCAAGGAAGATTTCTGGCCATGGGAGGAAGTTTTGAGAAAAAGAGAATGAAAAATGAATGGTCTTGCACGAATCTGATCTACTATAGTGGTGAAGCTACCAAGTTTTGCAATAATCCATGGGAG

Protein sequence

MGEKKTTLRKIEDYQEIYLYKILVRGNQGQGRFLAMGGSFEKKRMKNEWSCTNLIYYSGEATKFCNNPWE

Homology

[Close]

BLAST of MELO3C034918.1 vs. NCBI nr
Match: TYK01233.1 (putative actin [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 30  QGRFLAMGGSFEKKRMKNEWSCTNLIYYSGEAT 63
           +G  +AMGGSFEKKRMKNEWSCTNLIYYSGEAT
Sbjct: 68  KGDSMAMGGSFEKKRMKNEWSCTNLIYYSGEAT 100

[Close]

BLAST of MELO3C034918.1 vs. NCBI nr
Match: KAA0033851.1 (putative actin [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-07
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 30  QGRFLAMGGSFEKKRMKNEWSCTNLIYYSGEAT 63
           +G  +AMGGSFEKKRMKNEWSCTNLIYYSGEAT
Sbjct: 69  KGDSMAMGGSFEKKRMKNEWSCTNLIYYSGEAT 101

[Close]

BLAST of MELO3C034918.1 vs. ExPASy TrEMBL
Match: A0A5A7SWL7 (Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00250 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.9e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 30  QGRFLAMGGSFEKKRMKNEWSCTNLIYYSGEAT 63
           +G  +AMGGSFEKKRMKNEWSCTNLIYYSGEAT
Sbjct: 69  KGDSMAMGGSFEKKRMKNEWSCTNLIYYSGEAT 101

[Close]

BLAST of MELO3C034918.1 vs. ExPASy TrEMBL
Match: A0A5D3BNA0 (Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00110 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.9e-08
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 30  QGRFLAMGGSFEKKRMKNEWSCTNLIYYSGEAT 63
           +G  +AMGGSFEKKRMKNEWSCTNLIYYSGEAT
Sbjct: 68  KGDSMAMGGSFEKKRMKNEWSCTNLIYYSGEAT 100

The following BLAST results are available for this feature:

BLAST of MELO3C034918.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C034918.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01233.1	1.6e-07	87.88	putative actin [Cucumis melo var. makuwa]	[more]
KAA0033851.1	1.6e-07	87.88	putative actin [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034918.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWL7	7.9e-08	87.88	Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G002...	[more]
A0A5D3BNA0	7.9e-08	87.88	Putative actin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00110 ...	[more]

BLAST of MELO3C034918.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C034918	MELO3C034918	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034918.1:exon:334564	MELO3C034918.1:exon:334564	exon
MELO3C034918.1:exon:334565	MELO3C034918.1:exon:334565	exon
MELO3C034918.1:exon:334566	MELO3C034918.1:exon:334566	exon
MELO3C034918.1:exon:334567	MELO3C034918.1:exon:334567	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034918.1:five_prime_utr	MELO3C034918.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034918.1:cds	MELO3C034918.1:cds	CDS
MELO3C034918.1:cds	MELO3C034918.1:cds_2	CDS
MELO3C034918.1:cds	MELO3C034918.1:cds_3	CDS
MELO3C034918.1:cds	MELO3C034918.1:cds_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C034918.1	MELO3C034918.1-protein	polypeptide