MELO3C034916.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C034916.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cysteine-rich RLK (Receptor-like protein kinase) 8
Location	chr12: 8095293 .. 8095869 (+)
Sequence length	577
RNA-Seq Expression	MELO3C034916.1
Synteny	MELO3C034916.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGGTTTGTTTAAATCAGGTTATGATTGATGAAGAAATTCCTTGTCAAAAGTTAGGTTTCCATCTCCCTTCAAGGTTGAACTCGAACCTTCAAAGGAATCCTTAGAAGGTTGATACGGACCTCATCGGAGTTTCACCAAAAGTCCAAGGAAGATTCTGATTACAGGGAGCAATCTTGTCAAATCTCCAGCAATTGTGAACTCCGTTAAAGGTAGTTTGCTGTTATTCGCTAAGGCGTTAAGTAATTCAGATGACCGTTCAAATTCAGAAGGGAGCAAAAGTATGGAAGATGAAGAGGTGCAATTAGTGAGAAAAGAGAAAAATCCTGCTGTGCCACCTGTCTTACCCATTGAATTCCAAGAGCCACTCGTGAGTAATGATCTGCTGGCTAAGTCCTTTTCGGTACCTAATAGGAAGTTAAGAGTTAATTTTGCAGCTAACAAAAGACTAAATGCCAAAACGCCCAATTTTTTTTAATTTTCAGCAAAGGTAGCCTATCAGTCACAAGGCCCTCTTACAAACACTTTGAGCTCCTCCTACAGCAGATCGTTGCCCCAAGTTTATTCAGTTCCGTTAG

mRNA sequence

TATGGTTTGTTTAAATCAGGTTATGATTGATGAAGAAATTCCTTGTCAAAAGTTAGGTTTCCATCTCCCTTCAAGGTTGAACTCGAACCTTCAAAGGAATCCTTAGAAGGTTGATACGGACCTCATCGGAGTTTCACCAAAAGTCCAAGGAAGATTCTGATTACAGGGAGCAATCTTGTCAAATCTCCAGCAATTGTGAACTCCGTTAAAGGTAGTTTGCTGTTATTCGCTAAGGCGTTAAGTAATTCAGATGACCGTTCAAATTCAGAAGGGAGCAAAAGTATGGAAGATGAAGAGGTGCAATTAGTGAGAAAAGAGAAAAATCCTGCTGTGCCACCTGTCTTACCCATTGAATTCCAAGAGCCACTCGTGAGTAATGATCTGCTGGCTAAGTCCTTTTCGGTACCTAATAGGAAGTTAAGAGTTAATTTTGCAGCTAACAAAAGACTAAATGCCAAAACGCCCAATTTTTTTTAATTTTCAGCAAAGGTAGCCTATCAGTCACAAGGCCCTCTTACAAACACTTTGAGCTCCTCCTACAGCAGATCGTTGCCCCAAGTTTATTCAGTTCCGTTAG

Coding sequence (CDS)

ATGGAAGATGAAGAGGTGCAATTAGTGAGAAAAGAGAAAAATCCTGCTGTGCCACCTGTCTTACCCATTGAATTCCAAGAGCCACTCGTGAGTAATGATCTGCTGGCTAAGTCCTTTTCGGTACCTAATAGGAAGTTAAGAGTTAATTTTGCAGCTAACAAAAGACTAAATGCCAAAACGCCCAATTTTTTTTAA

Protein sequence

MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSVPNRKLRVNFAANKRLNAKTPNFF

Homology

[Close]

BLAST of MELO3C034916.1 vs. NCBI nr
Match: TYK20921.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.9e-13
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSVPNRKL 47
           MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFS   RKL
Sbjct: 143 MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSSHTRKL 188

[Close]

BLAST of MELO3C034916.1 vs. NCBI nr
Match: KAA0032563.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 6.9e-13
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSVPNRKL 47
           MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFS   RKL
Sbjct: 143 MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSSHTRKL 188

[Close]

BLAST of MELO3C034916.1 vs. NCBI nr
Match: TYK22383.1 (uncharacterized protein E5676_scaffold173G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-12
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1   MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVS-NDLLAKSFSVPNRKLRVNFAANKRLNAK 60
           +EDEEVQLVR+EKNP VPPVLPIE         D  AKSFSV N+KLRVNFA NK+L+AK
Sbjct: 162 VEDEEVQLVREEKNPVVPPVLPIEIPRTTHEFKDTAAKSFSVLNKKLRVNFADNKKLDAK 221

Query: 61  TPNFF 65
            PN F
Sbjct: 222 PPNLF 226

[Close]

BLAST of MELO3C034916.1 vs. ExPASy TrEMBL
Match: A0A5A7SQA9 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00220 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-13
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSVPNRKL 47
           MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFS   RKL
Sbjct: 143 MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSSHTRKL 188

[Close]

BLAST of MELO3C034916.1 vs. ExPASy TrEMBL
Match: A0A5D3DBC6 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00640 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.3e-13
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1   MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSVPNRKL 47
           MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFS   RKL
Sbjct: 143 MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVSNDLLAKSFSSHTRKL 188

[Close]

BLAST of MELO3C034916.1 vs. ExPASy TrEMBL
Match: A0A5D3DFR0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00060 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1   MEDEEVQLVRKEKNPAVPPVLPIEFQEPLVS-NDLLAKSFSVPNRKLRVNFAANKRLNAK 60
           +EDEEVQLVR+EKNP VPPVLPIE         D  AKSFSV N+KLRVNFA NK+L+AK
Sbjct: 162 VEDEEVQLVREEKNPVVPPVLPIEIPRTTHEFKDTAAKSFSVLNKKLRVNFADNKKLDAK 221

Query: 61  TPNFF 65
            PN F
Sbjct: 222 PPNLF 226

The following BLAST results are available for this feature:

BLAST of MELO3C034916.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C034916.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20921.1	6.9e-13	93.48	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]	[more]
KAA0032563.1	6.9e-13	93.48	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa]	[more]
TYK22383.1	3.4e-12	67.69	uncharacterized protein E5676_scaffold173G00060 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C034916.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SQA9	3.3e-13	93.48	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3DBC6	3.3e-13	93.48	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3DFR0	1.7e-12	67.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C034916.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C034916	MELO3C034916	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034916.1:exon:347712	MELO3C034916.1:exon:347712	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034916.1:five_prime_utr	MELO3C034916.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034916.1:cds	MELO3C034916.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C034916.1:three_prime_utr	MELO3C034916.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C034916.1	MELO3C034916.1-protein	polypeptide