MELO3C033055.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033055.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	ATP-dependent Clp protease ATP-binding subunit ClpC
Location	chr08: 19470952 .. 19471140 (+)
Sequence length	189
RNA-Seq Expression	MELO3C033055.jh1.t1
Synteny	MELO3C033055.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATAACCTTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTCATGCAACAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

mRNA sequence

GTTATAACCTTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTCATGCAACAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

Coding sequence (CDS)

ATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGGGAGTTTGAAGAAAGATTAAAGAAACTGATGGAGGAAATAAAACAAAGTGATGGAGCAGGGGCTGCAGAAGGAGCTATTCATGCAACAAACATATTAAAACCTACCCTTGCAAGGGGTCAACTGCAGGTATTCTCGTAA

Protein sequence

MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIHATNILKPTLARGQLQVFS

Homology

[Close]

BLAST of MELO3C033055.jh1.t1 vs. NCBI nr
Match: TYK21918.1 (Chaperone protein ClpC1 chloroplastic [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.14e-23
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIHATNILKPTLARGQLQV 55
           MGLLVAGTKYRGEFEER KKL+EEIKQSDGAGAA+GAI A NILKPTLARGQLQV
Sbjct: 134 MGLLVAGTKYRGEFEERFKKLIEEIKQSDGAGAAKGAIDAANILKPTLARGQLQV 188

[Close]

BLAST of MELO3C033055.jh1.t1 vs. NCBI nr
Match: RRT78584.1 (hypothetical protein B296_00023768 [Ensete ventricosum])

HSP 1 Score: 95.1 bits (235), Expect = 1.14e-21
Identity = 53/70 (75.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 57
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 244 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 303

[Close]

BLAST of MELO3C033055.jh1.t1 vs. NCBI nr
Match: VAH31937.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 90.1 bits (222), Expect = 1.15e-21
Identity = 50/68 (73.53%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
          MGLLVAGTKYRGEFEERLKKLMEEIKQ+D             GAGAAEGAI A NILKP 
Sbjct: 1  MGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPA 60

[Close]

BLAST of MELO3C033055.jh1.t1 vs. NCBI nr
Match: RWW18688.1 (hypothetical protein GW17_00017312 [Ensete ventricosum])

HSP 1 Score: 95.1 bits (235), Expect = 1.47e-21
Identity = 53/70 (75.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 57
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 263 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 322

[Close]

BLAST of MELO3C033055.jh1.t1 vs. NCBI nr
Match: VVW59200.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 89.7 bits (221), Expect = 1.50e-21
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 54
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 37  MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 96

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy Swiss-Prot
Match: P31541 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4A PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.6e-18
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy Swiss-Prot
Match: P31542 (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4B PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.6e-18
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 395

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q2QVG9 (Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CLPC2 PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 8.6e-18
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 333 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 392

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy Swiss-Prot
Match: P35100 (Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.6e-18
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 336 MGLLVAGTKYRGEFEERLKKLMEEIKQSDDIILFIDEVHTLIGAGAAEGAIDAANILKPA 395

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q9FI56 (Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.9e-17
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAI A NILKP 
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DEP3 (Chaperone protein ClpC1 chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00600 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.04e-23
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSDGAGAAEGAIHATNILKPTLARGQLQV 55
           MGLLVAGTKYRGEFEER KKL+EEIKQSDGAGAA+GAI A NILKPTLARGQLQV
Sbjct: 134 MGLLVAGTKYRGEFEERFKKLIEEIKQSDGAGAAKGAIDAANILKPTLARGQLQV 188

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5K1AZE0 (ATPase_AAA_core domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13145 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.11e-22
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 54
          MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 6  MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 65

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy TrEMBL
Match: A0A427AQR5 (Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00023768 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.51e-22
Identity = 53/70 (75.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 57
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 244 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 303

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy TrEMBL
Match: A0A446L2W3 (ATPase_AAA_core domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_2Av1G174080 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.55e-22
Identity = 50/68 (73.53%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
          MGLLVAGTKYRGEFEERLKKLMEEIKQ+D             GAGAAEGAI A NILKP 
Sbjct: 1  MGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPA 60

[Close]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy TrEMBL
Match: A0A444F7S8 (Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00017312 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.10e-22
Identity = 53/70 (75.71%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 57
           MGLLVAGTKYRGEFEERLKKLMEEIKQSD             GAGAAEGAI A NILKP 
Sbjct: 263 MGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 322

[Close]

BLAST of MELO3C033055.jh1.t1 vs. TAIR 10
Match: AT3G48870.1 (Clp ATPase )

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-18
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAI A NILKP 
Sbjct: 359 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 418

[Close]

BLAST of MELO3C033055.jh1.t1 vs. TAIR 10
Match: AT3G48870.2 (Clp ATPase )

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-18
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAI A NILKP 
Sbjct: 328 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 387

[Close]

BLAST of MELO3C033055.jh1.t1 vs. TAIR 10
Match: AT5G50920.1 (CLPC homologue 1 )

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-18
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD-------------GAGAAEGAIHATNILKPT 55
           MGLLVAGTKYRGEFEERLKKLMEEI+QSD             GAGAAEGAI A NILKP 
Sbjct: 338 MGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPA 397

[Close]

BLAST of MELO3C033055.jh1.t1 vs. TAIR 10
Match: AT1G74310.1 (heat shock protein 101 )

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIHATNILKP 55
           MG LVAG KYRGEFEERLK +++E++ ++              GAG  EG++ A N+ KP
Sbjct: 243 MGALVAGAKYRGEFEERLKSVLKEVEDAEGKVILFIDEIHLVLGAGKTEGSMDAANLFKP 302

[Close]

BLAST of MELO3C033055.jh1.t1 vs. TAIR 10
Match: AT5G15450.1 (casein lytic proteinase B3 )

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-10
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   MGLLVAGTKYRGEFEERLKKLMEEIKQSD--------------GAGAAEGAIHATNILKP 55
           MG L+AG KYRGEFE+RLK +++E+  S+              GAGA  GA+ A N+LKP
Sbjct: 318 MGALIAGAKYRGEFEDRLKAVLKEVTDSEGQIILFIDEIHTVVGAGATNGAMDAGNLLKP 377

The following BLAST results are available for this feature:

BLAST of MELO3C033055.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21918.1	2.14e-23	90.91	Chaperone protein ClpC1 chloroplastic [Cucumis melo var. makuwa]	[more]
RRT78584.1	1.14e-21	75.71	hypothetical protein B296_00023768 [Ensete ventricosum]	[more]
VAH31937.1	1.15e-21	73.53	unnamed protein product [Triticum turgidum subsp. durum]	[more]
RWW18688.1	1.47e-21	75.71	hypothetical protein GW17_00017312 [Ensete ventricosum]	[more]
VVW59200.1	1.50e-21	74.63	unnamed protein product, partial [Nymphaea colorata]	[more]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P31541	8.6e-18	74.63	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ...	[more]
P31542	8.6e-18	74.63	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ...	[more]
Q2QVG9	8.6e-18	74.63	Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
P35100	8.6e-18	74.63	Chaperone protein ClpC, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q9FI56	1.9e-17	73.13	Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPC1 ...	[more]

BLAST of MELO3C033055.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DEP3	1.04e-23	90.91	Chaperone protein ClpC1 chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5K1AZE0	3.11e-22	74.63	ATPase_AAA_core domain-containing protein (Fragment) OS=Nymphaea colorata OX=210...	[more]
A0A427AQR5	5.51e-22	75.71	Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00023768 P...	[more]
A0A446L2W3	5.55e-22	73.53	ATPase_AAA_core domain-containing protein OS=Triticum turgidum subsp. durum OX=4...	[more]
A0A444F7S8	7.10e-22	75.71	Clp R domain-containing protein OS=Ensete ventricosum OX=4639 GN=GW17_00017312 P...	[more]

BLAST of MELO3C033055.jh1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48870.1	1.4e-18	73.13	Clp ATPase	[more]
AT3G48870.2	1.4e-18	73.13	Clp ATPase	[more]
AT5G50920.1	1.4e-18	73.13	CLPC homologue 1	[more]
AT1G74310.1	2.8e-11	48.53	heat shock protein 101	[more]
AT5G15450.1	1.4e-10	47.06	casein lytic proteinase B3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..31
None	No IPR available	PANTHER	PTHR11638	ATP-DEPENDENT CLP PROTEASE	coord: 1..55
None	No IPR available	PANTHER	PTHR11638:SF169	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC	coord: 1..55
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..57 e-value: 2.7E-10 score: 42.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C033055.jh1	MELO3C033055.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033055.jh1.t1.exon	MELO3C033055.jh1.t1.exon	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033055.jh1.t1.start_codon	MELO3C033055.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033055.jh1.t1.cds	MELO3C033055.jh1.t1.cds	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C033055.jh1.t1.stop_codon	MELO3C033055.jh1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C033055.jh1.t1	MELO3C033055.jh1.t1-protein	polypeptide