MELO3C032501.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C032501.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	6-phosphogluconate dehydrogenase, decarboxylating
Location	chr07: 14996410 .. 14996607 (+)
Sequence length	198
RNA-Seq Expression	MELO3C032501.1
Synteny	MELO3C032501.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATCACACATTAAGTATAGGCGTGCTAGGCTGCCTGCCAATCTTGTGGAGGCGCAAAGAGACTTATTTGAGGCTCATACAAATGAGCGGGTGGATCGCCTAGACTCCTACCACACGGGGTGGACAAAGCTGGCTCGCAATGCTAATACTGGAGTTGGCATTTTCAACTGAGCTTTTGAGCTGCCTACCAATTTG

mRNA sequence

GGAAAATCACACATTAAGTATAGGCGTGCTAGGCTGCCTGCCAATCTTGTGGAGGCGCAAAGAGACTTATTTGAGGCTCATACAAATGAGCGGGTGGATCGCCTAGACTCCTACCACACGGGGTGGACAAAGCTGGCTCGCAATGCTAATACTGGAGTTGGCATTTTCAACTGAGCTTTTGAGCTGCCTACCAATTTG

Coding sequence (CDS)

GGAAAATCACACATTAAGTATAGGCGTGCTAGGCTGCCTGCCAATCTTGTGGAGGCGCAAAGAGACTTATTTGAGGCTCATACAAATGAGCGGGTGGATCGCCTAGACTCCTACCACACGGGGTGGACAAAGCTGGCTCGCAATGCTAATACTGGAGTTGGCATTTTCAACTGA

Protein sequence

GKSHIKYRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN

Homology

[Close]

BLAST of MELO3C032501.1 vs. NCBI nr
Match: KAA0045322.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   GKSHIKYRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
           GKSHIKYRRARLPANLVEAQRDLFEAHT ERVDRLDSYHTGWTKLARNANTGVGIFN
Sbjct: 143 GKSHIKYRRARLPANLVEAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 199

[Close]

BLAST of MELO3C032501.1 vs. NCBI nr
Match: KAA0054542.1 (6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   GKSHIKYRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
           GKSHIKYRRARLPANLVEAQRDLFEAHT ERVDRLDSYHTGWTKLARNANTGVGIFN
Sbjct: 61  GKSHIKYRRARLPANLVEAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 117

[Close]

BLAST of MELO3C032501.1 vs. NCBI nr
Match: KAA0062855.1 (6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 8  RRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
          RRARLPANLVEAQRDLF AHT+E+VD LDSYHTGWTKLARNA+ GVGIFN
Sbjct: 15 RRARLPANLVEAQRDLFGAHTDEQVDCLDSYHTGWTKLARNADAGVGIFN 64

[Close]

BLAST of MELO3C032501.1 vs. NCBI nr
Match: KAA0043074.1 (6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa] >TYK30807.1 6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 8.6e-15
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 9  RARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
          RARLPANLVEAQRDLF AHT E+VD LDSYHTGWTKLARNA+ GVGIFN
Sbjct: 13 RARLPANLVEAQRDLFGAHTYEQVDCLDSYHTGWTKLARNADAGVGIFN 61

[Close]

BLAST of MELO3C032501.1 vs. NCBI nr
Match: KAA0044873.1 (6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 8.6e-15
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
           YRRARLPANLV+AQRDLF AHT ERVDR  SYHT WTKLARNA+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARNADAGVGIFN 495

[Close]

BLAST of MELO3C032501.1 vs. ExPASy Swiss-Prot
Match: Q9FFR3 (6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGD3 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.1e-12
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNA 50
           YRRARLPANLV+AQRDLF AHT ER DR  +YHT WTKLAR +
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARKS 486

[Close]

BLAST of MELO3C032501.1 vs. ExPASy Swiss-Prot
Match: Q9SH69 (6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGD1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.2e-12
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLAR 48
           YRRARLPANLV+AQRDLF AHT ER DR  +YHT WTKLAR
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLAR 484

[Close]

BLAST of MELO3C032501.1 vs. ExPASy Swiss-Prot
Match: Q2R480 (6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=G6PGH2 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNAN 51
           YR +RLPANL++AQRDLF AHT ER+DR  S+HT WTKLAR +N
Sbjct: 461 YRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLARKSN 504

[Close]

BLAST of MELO3C032501.1 vs. ExPASy Swiss-Prot
Match: Q94KU2 (6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea OX=3562 GN=pgdP PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-11
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGV 54
           YRRARLPANLV+AQRD F AHT ERVD   SYHT W+KLAR ++  V
Sbjct: 486 YRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLARKSDPNV 532

[Close]

BLAST of MELO3C032501.1 vs. ExPASy Swiss-Prot
Match: Q9LI00 (6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica OX=39947 GN=G6PGH1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-09
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNA 50
           YRR RLPANLV+AQRD F AHT ERVD   S+HT W K+AR A
Sbjct: 436 YRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAA 478

[Close]

BLAST of MELO3C032501.1 vs. ExPASy TrEMBL
Match: A0A5A7UFK0 (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003260 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   GKSHIKYRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
           GKSHIKYRRARLPANLVEAQRDLFEAHT ERVDRLDSYHTGWTKLARNANTGVGIFN
Sbjct: 61  GKSHIKYRRARLPANLVEAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 117

[Close]

BLAST of MELO3C032501.1 vs. ExPASy TrEMBL
Match: A0A5A7TPM9 (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00940 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 1   GKSHIKYRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
           GKSHIKYRRARLPANLVEAQRDLFEAHT ERVDRLDSYHTGWTKLARNANTGVGIFN
Sbjct: 143 GKSHIKYRRARLPANLVEAQRDLFEAHTYERVDRLDSYHTGWTKLARNANTGVGIFN 199

[Close]

BLAST of MELO3C032501.1 vs. ExPASy TrEMBL
Match: A0A5A7VAC7 (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2406G00100 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 8  RRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
          RRARLPANLVEAQRDLF AHT+E+VD LDSYHTGWTKLARNA+ GVGIFN
Sbjct: 15 RRARLPANLVEAQRDLFGAHTDEQVDCLDSYHTGWTKLARNADAGVGIFN 64

[Close]

BLAST of MELO3C032501.1 vs. ExPASy TrEMBL
Match: A0A5A7TIB3 (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold267G00350 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 9  RARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
          RARLPANLVEAQRDLF AHT E+VD LDSYHTGWTKLARNA+ GVGIFN
Sbjct: 13 RARLPANLVEAQRDLFGAHTYEQVDCLDSYHTGWTKLARNADAGVGIFN 61

[Close]

BLAST of MELO3C032501.1 vs. ExPASy TrEMBL
Match: A0A5D3CXH5 (6-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004200 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-15
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNANTGVGIFN 58
           YRRARLPANLV+AQRDLF AHT ERVDR  SYHT WTKLARNA+ GVGIFN
Sbjct: 445 YRRARLPANLVQAQRDLFGAHTYERVDRQGSYHTEWTKLARNADAGVGIFN 495

[Close]

BLAST of MELO3C032501.1 vs. TAIR 10
Match: AT5G41670.1 (6-phosphogluconate dehydrogenase family protein )

HSP 1 Score: 70.5 bits (171), Expect = 5.0e-13
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNA 50
           YRRARLPANLV+AQRDLF AHT ER DR  +YHT WTKLAR +
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARKS 486

[Close]

BLAST of MELO3C032501.1 vs. TAIR 10
Match: AT5G41670.2 (6-phosphogluconate dehydrogenase family protein )

HSP 1 Score: 70.5 bits (171), Expect = 5.0e-13
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNA 50
           YRRARLPANLV+AQRDLF AHT ER DR  +YHT WTKLAR +
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARKS 486

[Close]

BLAST of MELO3C032501.1 vs. TAIR 10
Match: AT1G64190.1 (6-phosphogluconate dehydrogenase family protein )

HSP 1 Score: 70.1 bits (170), Expect = 6.6e-13
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLAR 48
           YRRARLPANLV+AQRDLF AHT ER DR  +YHT WTKLAR
Sbjct: 444 YRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLAR 484

[Close]

BLAST of MELO3C032501.1 vs. TAIR 10
Match: AT3G02360.2 (6-phosphogluconate dehydrogenase family protein )

HSP 1 Score: 59.7 bits (143), Expect = 8.9e-10
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNA 50
           YRR RLPANLV+AQRD F AHT ER D   S+HT W K+AR +
Sbjct: 442 YRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQS 484

[Close]

BLAST of MELO3C032501.1 vs. TAIR 10
Match: AT3G02360.1 (6-phosphogluconate dehydrogenase family protein )

HSP 1 Score: 59.7 bits (143), Expect = 8.9e-10
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 7   YRRARLPANLVEAQRDLFEAHTNERVDRLDSYHTGWTKLARNA 50
           YRR RLPANLV+AQRD F AHT ER D   S+HT W K+AR +
Sbjct: 442 YRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQS 484

The following BLAST results are available for this feature:

BLAST of MELO3C032501.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045322.1	2.9e-23	98.25	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054542.1	2.9e-23	98.25	6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa]	[more]
KAA0062855.1	1.0e-15	88.00	6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa]	[more]
KAA0043074.1	8.6e-15	87.76	6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa] >TYK30807.1 6-phosph...	[more]
KAA0044873.1	8.6e-15	84.31	6-phosphogluconate dehydrogenase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032501.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFR3	7.1e-12	76.74	6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic OS=Arabidopsi...	[more]
Q9SH69	9.2e-12	80.49	6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsi...	[more]
Q2R480	2.1e-11	70.45	6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sati...	[more]
Q94KU2	2.7e-11	70.21	6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia o...	[more]
Q9LI00	2.5e-09	69.77	6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japon...	[more]

BLAST of MELO3C032501.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFK0	1.4e-23	98.25	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis m...	[more]
A0A5A7TPM9	1.4e-23	98.25	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis m...	[more]
A0A5A7VAC7	4.9e-16	88.00	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis m...	[more]
A0A5A7TIB3	4.2e-15	87.76	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) OS=Cucumis m...	[more]
A0A5D3CXH5	4.2e-15	84.31	6-phosphogluconate dehydrogenase, decarboxylating OS=Cucumis melo var. makuwa OX...	[more]

BLAST of MELO3C032501.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41670.1	5.0e-13	76.74	6-phosphogluconate dehydrogenase family protein	[more]
AT5G41670.2	5.0e-13	76.74	6-phosphogluconate dehydrogenase family protein	[more]
AT1G64190.1	6.6e-13	80.49	6-phosphogluconate dehydrogenase family protein	[more]
AT3G02360.2	8.9e-10	65.12	6-phosphogluconate dehydrogenase family protein	[more]
AT3G02360.1	8.9e-10	65.12	6-phosphogluconate dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006114	6-phosphogluconate dehydrogenase, C-terminal	PFAM	PF00393	6PGD	coord: 6..42 e-value: 9.6E-9 score: 35.0
None	No IPR available	GENE3D	1.20.5.320		coord: 11..44 e-value: 9.9E-13 score: 49.6
None	No IPR available	PANTHER	PTHR11811:SF51	6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 3, CHLOROPLASTIC	coord: 6..53
IPR006183	6-phosphogluconate dehydrogenase	PANTHER	PTHR11811	6-PHOSPHOGLUCONATE DEHYDROGENASE	coord: 6..53
IPR008927	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	SUPERFAMILY	48179	6-phosphogluconate dehydrogenase C-terminal domain-like	coord: 7..45

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C032501	MELO3C032501	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032501.1:exon:210624	MELO3C032501.1:exon:210624	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032501.1:cds	MELO3C032501.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032501.1:three_prime_utr	MELO3C032501.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C032501.1	MELO3C032501.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006098	pentose-phosphate shunt
molecular_function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity