MELO3C032486.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C032486.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ubiquitin-like-specific protease ESD4 isoform X2
Location	chr07: 4678521 .. 4680182 (+)
Sequence length	439
RNA-Seq Expression	MELO3C032486.1
Synteny	MELO3C032486.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGATTAGGATTCTTGCATCAATTTTTAACAATATCGATAATAATAAATTCGTATATTTCAAGGTACATTTGATTTCATTTTAGGGGTGAGCGGAGATATAGCATTGGGCCTTAAATTAATTAAGGATATAGCAAAAGTTAAATTTTTTTTTGCAAATATGGCAATTTTTAACAAAAAAGACGAAATTACCCTTACATATACACATTAAGCTTTTGGAATACGATTTCAAGCAGATTCTTCACGTTTTCCTCCTATTTTCTATTTTCTTCTACTTTCTTTGCACTCCGATTTGGTTTTCTGGTGCCGATTCTGGTTTGCGTTATTTTGTTTTCCTTCCGCCGCGCTACGTTCTCCACTTCATCTTACAATTGTAAGTTATTTGCTTTTTGTTTGAAATAGTAAGTTATTTTCGTAAGGTATCTTTGTTTTCGTTTGGTCGTAACCTGTTTGAAGAAGATTTTCTTCTTTTTCTATTTGTTTGAAATTGATTCCTTCATTTTCTGTTTGGTTGTGCTCTGTTTTTCAGTTTGTGTCTATCAATGATGTGTTTCTATCACTGATTGACAGATATAGAGGATGTTTAACTTGTTTATGTTGAAATGTTTAACATGTTGATTTGTTTTAGGTTTGTGTGTTAGTGTATAAGGTTAGGGTCTACCGGTGATATATTTGTATCACTGATAGTCTTGAGGGATGTTTAGTTTATTTGCATTAGGATGTTAGTAGATAATTTAGTTTAATGTATATTTTTATGTGATGTTGTTTATGTTCTATCAGTGATATGTTTCTATCAGTTTGAAGGATGTTTTACTTTGTTTGTGTTGGATTGTTATTATATGTTTGTATCACTGGTAGATTGTTATTAAAGAGAAAGAGGTAAATTATTAAAGCTTCTAGTTCTTTTACTTTTATTTTTTTCCAAGACTATTATGTTTGTGAGTGAAAAGTCTATCAATGGTAAAATTGTATCAATGATAGACTGTTCTTTCTATGATTTAAGTCTATTAGTAATAGGGTTCTATCGGTGATAGACTATTCTGAGATCTCAATTGTGATTCAAAAGTCTATCAATGATAGAATAATGACAGTTTCTATAATTCTTTTCAATGCAATACTAATATTAATATCTGCAAAAGATTGAAGATAACGAGGAAACTAAGGAAGATGATAATCATCGTGAAAATAAGTAAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTATTATAATAATCACATTTTGTTGTTTTATGATAGACTTAATGTATATATGTATAAACTCTAATTCAATATTATTTTTTCAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGAAGAATATTGAAAATGCTAGGTCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAGCAAAAGAATGCAAGAGGTAAGAAGAAAGATTCTCCAAAACCAGCAAGACATTCTCCTAGAACAAAGGATCTTGCACCTAGTTTTGATTTGTGAATCTCTCAATTATAAGTAGATGGATATTGTAGTGCAATAGTGTTGTTGATATTTGTGATAGAGTTCACATTGTTTTGATGTACAAATCTCTCAACATTGGACCTTCATATGTTGTTAGTTGATTTTACCATATTAATGAAGA

mRNA sequence

ATGGAAGAGATTAGGATTCTTGCATCAATTTTTAACAATATCGATAATAATAAATTCGTATATTTCAAGATTGTTATTAAAGAGAAAGAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGAAGAATATTGAAAATGCTAGGTCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAGCAAAAGAATGCAAGAGGTAAGAAGAAAGATTCTCCAAAACCAGCAAGACATTCTCCTAGAACAAAGGATCTTGCACCTAGTTTTGATTTGTGAATCTCTCAATTATAAGTAGATGGATATTGTAGTGCAATAGTGTTGTTGATATTTGTGATAGAGTTCACATTGTTTTGATGTACAAATCTCTCAACATTGGACCTTCATATGTTGTTAGTTGATTTTACCATATTAATGAAGA

Coding sequence (CDS)

ATGGAAGAGATTAGGATTCTTGCATCAATTTTTAACAATATCGATAATAATAAATTCGTATATTTCAAGATTGTTATTAAAGAGAAAGAGGTTGTTCAAGAAAAGGCAAAAGTGAAAATTATGGAAATAGCGAAGAATATTGAAAATGCTAGGTCGAAGAGACAACCTAAACCATCAAAGAAAGTGTTGGAGAATGTGAAAGAGCAAAAGAATGCAAGAGGTAAGAAGAAAGATTCTCCAAAACCAGCAAGACATTCTCCTAGAACAAAGGATCTTGCACCTAGTTTTGATTTGTGA

Protein sequence

MEEIRILASIFNNIDNNKFVYFKIVIKEKEVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRTKDLAPSFDL

Homology

[Close]

BLAST of MELO3C032486.1 vs. NCBI nr
Match: KAA0066789.1 (hypothetical protein E6C27_scaffold271G001310 [Cucumis melo var. makuwa] >TYK27936.1 hypothetical protein E5676_scaffold384G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 30 EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
          +VVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT
Sbjct: 10 KVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 69

Query: 90 KDLAPSFDL 99
          KDLAPSFDL
Sbjct: 70 KDLAPSFDL 78

[Close]

BLAST of MELO3C032486.1 vs. NCBI nr
Match: KAA0067348.1 (ubiquitin-like-specific protease ESD4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 4.3e-22
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 25  VIKEKEVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPAR 84
           V KEKEVVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP R
Sbjct: 203 VDKEKEVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR 262

Query: 85  HSPRTKDLAPSFDL 99
           HSPR KDLAPSF L
Sbjct: 263 HSPRIKDLAPSFAL 276

[Close]

BLAST of MELO3C032486.1 vs. NCBI nr
Match: KAA0065297.1 (hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-20
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 30  EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
           +VVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP +HSPR 
Sbjct: 141 KVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRI 200

Query: 90  KDLAPSFDL 99
           +DLAPSFDL
Sbjct: 201 RDLAPSFDL 209

[Close]

BLAST of MELO3C032486.1 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-20
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 30  EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
           +VVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP R+SPR 
Sbjct: 265 KVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRI 324

Query: 90  KDLAPSFDL 99
           +DLAPSFDL
Sbjct: 325 RDLAPSFDL 333

[Close]

BLAST of MELO3C032486.1 vs. NCBI nr
Match: TYK15261.1 (hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-20
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 30  EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
           +VVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP R+SPR 
Sbjct: 141 KVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRI 200

Query: 90  KDLAPSFDL 99
           +DLAPSFDL
Sbjct: 201 RDLAPSFDL 209

[Close]

BLAST of MELO3C032486.1 vs. ExPASy TrEMBL
Match: A0A5D3DW22 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001240 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 30 EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
          +VVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT
Sbjct: 10 KVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 69

Query: 90 KDLAPSFDL 99
          KDLAPSFDL
Sbjct: 70 KDLAPSFDL 78

[Close]

BLAST of MELO3C032486.1 vs. ExPASy TrEMBL
Match: A0A5A7VHY6 (Ubiquitin-like-specific protease ESD4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold179G00590 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 65/74 (87.84%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 25  VIKEKEVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPAR 84
           V KEKEVVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP R
Sbjct: 203 VDKEKEVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTR 262

Query: 85  HSPRTKDLAPSFDL 99
           HSPR KDLAPSF L
Sbjct: 263 HSPRIKDLAPSFAL 276

[Close]

BLAST of MELO3C032486.1 vs. ExPASy TrEMBL
Match: A0A5A7VDY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00110 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 30  EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
           +VVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP +HSPR 
Sbjct: 141 KVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTKHSPRI 200

Query: 90  KDLAPSFDL 99
           +DLAPSFDL
Sbjct: 201 RDLAPSFDL 209

[Close]

BLAST of MELO3C032486.1 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 30  EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
           +VVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP R+SPR 
Sbjct: 265 KVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRI 324

Query: 90  KDLAPSFDL 99
           +DLAPSFDL
Sbjct: 325 RDLAPSFDL 333

[Close]

BLAST of MELO3C032486.1 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 30  EVVQEKAKVKIMEIAKNIENARSKRQPKPSKKVLENVKEQKNARGKKKDSPKPARHSPRT 89
           +VVQEKAKVKIMEIA NIE AR KRQPKPSKKVLENVKEQKN RGKK DSPKP R+SPR 
Sbjct: 141 KVVQEKAKVKIMEIATNIEKARPKRQPKPSKKVLENVKEQKNVRGKKNDSPKPTRYSPRI 200

Query: 90  KDLAPSFDL 99
           +DLAPSFDL
Sbjct: 201 RDLAPSFDL 209

The following BLAST results are available for this feature:

BLAST of MELO3C032486.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066789.1	4.1e-25	98.55	hypothetical protein E6C27_scaffold271G001310 [Cucumis melo var. makuwa] >TYK279...	[more]
KAA0067348.1	4.3e-22	87.84	ubiquitin-like-specific protease ESD4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0065297.1	3.1e-20	85.51	hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]	[more]
KAA0031317.1	6.8e-20	85.51	uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0...	[more]
TYK15261.1	6.8e-20	85.51	hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C032486.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032486.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DW22	2.0e-25	98.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHY6	2.1e-22	87.84	Ubiquitin-like-specific protease ESD4 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7VDY1	1.5e-20	85.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VIA9	3.3e-20	85.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CTS8	3.3e-20	85.51	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C032486.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C032486	MELO3C032486	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032486.1:exon:200037	MELO3C032486.1:exon:200037	exon
MELO3C032486.1:exon:200038	MELO3C032486.1:exon:200038	exon
MELO3C032486.1:exon:200039	MELO3C032486.1:exon:200039	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032486.1:cds	MELO3C032486.1:cds	CDS
MELO3C032486.1:cds	MELO3C032486.1:cds_2	CDS
MELO3C032486.1:cds	MELO3C032486.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032486.1:three_prime_utr	MELO3C032486.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C032486.1	MELO3C032486.1-protein	polypeptide