MELO3C032040.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C032040.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr06: 14307981 .. 14308535 (-)
Sequence length	555
RNA-Seq Expression	MELO3C032040.1
Synteny	MELO3C032040.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCTGGTAGAAGAAAAAGTGAAAGTAAAATATAACTACTCAGGTTTTGTACCAGCCTCCATACAAATCAAAGATGACTTTGGACAGGTACACATTATACAAATAGTCCCTCCACCAAAAAACAGATGGTTAATTGAAAGAAATGCCAGAATACATGGTACTTTCAGAAGTGGAGCTACAAGGGACTTTGATGAATTCAACTTCTTTTTAGAAACGTTCAGATTCATCGAATTTCATGCCATACCATCGAAAAACTTAGGAGAAAAATTTCAAGGCAACTTCACTAATATCATTAATGCAATAGAAGCAAATCACACCAAAACCAAGGATTATAACTCATCTTGTTCTGATTTTAATTTCTTTGATTCAATTTTGAGCAGAAAAAGGAGAGAGAAAGGAAAATCAATTATGAACATTTATGACAAGAATCAAAGAAAATCCTTAAGAAGGAAAGTCTCCTTCTCATCTCCGCAGTCTCTACATTCTTACAGCTCACACAAGGAAAGTAGAAAACAAAGCAAATTAAATAGTCCACAAGAAGATCAATAG

mRNA sequence

ATGGAGAATCTGGTAGAAGAAAAAGTGAAAGTAAAATATAACTACTCAGGTTTTGTACCAGCCTCCATACAAATCAAAGATGACTTTGGACAGGTACACATTATACAAATAGTCCCTCCACCAAAAAACAGATGGTTAATTGAAAGAAATGCCAGAATACATGGTACTTTCAGAAGTGGAGCTACAAGGGACTTTGATGAATTCAACTTCTTTTTAGAAACGTTCAGATTCATCGAATTTCATGCCATACCATCGAAAAACTTAGGAGAAAAATTTCAAGGCAACTTCACTAATATCATTAATGCAATAGAAGCAAATCACACCAAAACCAAGGATTATAACTCATCTTGTTCTGATTTTAATTTCTTTGATTCAATTTTGAGCAGAAAAAGGAGAGAGAAAGGAAAATCAATTATGAACATTTATGACAAGAATCAAAGAAAATCCTTAAGAAGGAAAGTCTCCTTCTCATCTCCGCAGTCTCTACATTCTTACAGCTCACACAAGGAAAGTAGAAAACAAAGCAAATTAAATAGTCCACAAGAAGATCAATAG

Coding sequence (CDS)

ATGGAGAATCTGGTAGAAGAAAAAGTGAAAGTAAAATATAACTACTCAGGTTTTGTACCAGCCTCCATACAAATCAAAGATGACTTTGGACAGGTACACATTATACAAATAGTCCCTCCACCAAAAAACAGATGGTTAATTGAAAGAAATGCCAGAATACATGGTACTTTCAGAAGTGGAGCTACAAGGGACTTTGATGAATTCAACTTCTTTTTAGAAACGTTCAGATTCATCGAATTTCATGCCATACCATCGAAAAACTTAGGAGAAAAATTTCAAGGCAACTTCACTAATATCATTAATGCAATAGAAGCAAATCACACCAAAACCAAGGATTATAACTCATCTTGTTCTGATTTTAATTTCTTTGATTCAATTTTGAGCAGAAAAAGGAGAGAGAAAGGAAAATCAATTATGAACATTTATGACAAGAATCAAAGAAAATCCTTAAGAAGGAAAGTCTCCTTCTCATCTCCGCAGTCTCTACATTCTTACAGCTCACACAAGGAAAGTAGAAAACAAAGCAAATTAAATAGTCCACAAGAAGATCAATAG

Protein sequence

MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDFNFFDSILSRKRREKGKSIMNIYDKNQRKSLRRKVSFSSPQSLHSYSSHKESRKQSKLNSPQEDQ

Homology

[Close]

BLAST of MELO3C032040.1 vs. NCBI nr
Match: TYK05442.1 (hypothetical protein E5676_scaffold83G001410 [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-30
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 2   ENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGA 61
           ENL+E KVKVKYNY+GFVPASI IKDD G  +IIQ VPPP++RWLIERN +IHGTF+S  
Sbjct: 162 ENLIEAKVKVKYNYTGFVPASILIKDDIGHEYIIQTVPPPESRWLIERNVKIHGTFKSEV 221

Query: 62  TRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNI 100
            RDFDEFNF  ETF F  FHAIP  NL EK   N T I
Sbjct: 222 ARDFDEFNFSSETFTFAGFHAIPPDNLREKVNVNITKI 259

[Close]

BLAST of MELO3C032040.1 vs. NCBI nr
Match: KAA0035247.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK22402.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 6.1e-30
Identity = 79/183 (43.17%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           ME L++ K+KV+YNY GFVPAS+ I D+ G+  I+  VPP K RWL+ERN R+HGTF++ 
Sbjct: 266 MEKLIDAKIKVRYNYIGFVPASVLITDNQGENFILTTVPPTKARWLVERNVRVHGTFKTK 325

Query: 61  ATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDF 120
           A  +FD+ N   E + +  F AIP ++   +   +F N      +NHT+ K  NSS S++
Sbjct: 326 AADEFDQHNPLAEAYTYNGFQAIPLESTRTRGDYSFLNSDKHSVSNHTQAKKNNSSESEY 385

Query: 121 NFFDSILSRKRREKGKSIMNI-------YDKNQRKSLRRKVSFSSPQSLHSYSSHKESRK 177
           + FD  LS +R+EKGK I+ I       Y K  ++   RKVSF SP  + SYSS+ E   
Sbjct: 386 DPFDQQLSERRKEKGKVILLINDQDHGHYSKRSKRISNRKVSFLSPGCIQSYSSNTEKNI 445

[Close]

BLAST of MELO3C032040.1 vs. NCBI nr
Match: KAA0034887.1 (hypothetical protein E6C27_scaffold103G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-29
Identity = 67/98 (68.37%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 2   ENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGA 61
           ENL+E KVKVKYNY+GFVPASI IKDD    +IIQ VPPP++RWLIERN +IHGTF+S  
Sbjct: 162 ENLIEAKVKVKYNYTGFVPASILIKDDICHEYIIQTVPPPESRWLIERNVKIHGTFKSEV 221

Query: 62  TRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNI 100
            RDFDEFNF  ETF F  FHAIP  NL EK   N T I
Sbjct: 222 ARDFDEFNFSSETFTFAGFHAIPPDNLREKVDVNITKI 259

[Close]

BLAST of MELO3C032040.1 vs. NCBI nr
Match: KAA0026125.1 (hypothetical protein E6C27_scaffold19G00740 [Cucumis melo var. makuwa] >TYK11585.1 hypothetical protein E5676_scaffold263G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 8.9e-29
Identity = 82/195 (42.05%), Postives = 114/195 (58.46%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           ME L++ K+KV+YNY+GFVPASI I DD G   II  VPPPK RW +ER  R+HG+F+S 
Sbjct: 142 MEKLIDAKIKVRYNYTGFVPASIMITDDQGDNFIITTVPPPKARWFVERYVRVHGSFKSK 201

Query: 61  ATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDF 120
           A  +FDE N   E + + +F AIP      +   ++ N      +NHT+ K  NSS  ++
Sbjct: 202 AANEFDEHNPSAEVYTYNDFQAIPQGTTKSRGDYSYLNSDKHSISNHTQAKKNNSSEFEY 261

Query: 121 NFFDSILSRKRREKGKSIMNI-------YDKNQRKSLRRKVSFSSPQSLHSYSS------ 180
           + FD  L  KR+EKGK+I+ I       Y K  ++  +RKV F SP   HS+SS      
Sbjct: 262 DPFDQQLCEKRKEKGKAILIINDQDHDHYFKRSKRICKRKVFFLSPGCNHSHSSIMDKNI 321

Query: 181 HKESRKQSKLNSPQE 183
            ++S + S +N P E
Sbjct: 322 ERKSMEISTINEPFE 336

[Close]

BLAST of MELO3C032040.1 vs. NCBI nr
Match: KAA0056838.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99341.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-26
Identity = 75/183 (40.98%), Postives = 109/183 (59.56%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           M+ L++ K+KV+YNY+GFVPASI I D+ G+  I+  V P + RWL+ERN R+HG+FR+ 
Sbjct: 306 MDKLIDAKIKVRYNYTGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSFRTK 365

Query: 61  ATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDF 120
           A  +FD+ N   ET+ +  F AIP +        +  N      + HT+ K  NSS S++
Sbjct: 366 AADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNNSSESEY 425

Query: 121 NFFDSILSRKRREKGKSIMNI-------YDKNQRKSLRRKVSFSSPQSLHSYSSHKESRK 177
           + FD  LS +R+EKGK+I+ I       Y K  ++   RKVSF SP  + S SS+ E   
Sbjct: 426 DPFDQQLSDRRKEKGKAILIINDQNHGHYSKRSKRISNRKVSFLSPGGIQSNSSNTEINT 485

[Close]

BLAST of MELO3C032040.1 vs. ExPASy TrEMBL
Match: A0A5D3C2M8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001410 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 2   ENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGA 61
           ENL+E KVKVKYNY+GFVPASI IKDD G  +IIQ VPPP++RWLIERN +IHGTF+S  
Sbjct: 162 ENLIEAKVKVKYNYTGFVPASILIKDDIGHEYIIQTVPPPESRWLIERNVKIHGTFKSEV 221

Query: 62  TRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNI 100
            RDFDEFNF  ETF F  FHAIP  NL EK   N T I
Sbjct: 222 ARDFDEFNFSSETFTFAGFHAIPPDNLREKVNVNITKI 259

[Close]

BLAST of MELO3C032040.1 vs. ExPASy TrEMBL
Match: A0A5D3DFM9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00270 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30
Identity = 79/183 (43.17%), Postives = 112/183 (61.20%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           ME L++ K+KV+YNY GFVPAS+ I D+ G+  I+  VPP K RWL+ERN R+HGTF++ 
Sbjct: 266 MEKLIDAKIKVRYNYIGFVPASVLITDNQGENFILTTVPPTKARWLVERNVRVHGTFKTK 325

Query: 61  ATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDF 120
           A  +FD+ N   E + +  F AIP ++   +   +F N      +NHT+ K  NSS S++
Sbjct: 326 AADEFDQHNPLAEAYTYNGFQAIPLESTRTRGDYSFLNSDKHSVSNHTQAKKNNSSESEY 385

Query: 121 NFFDSILSRKRREKGKSIMNI-------YDKNQRKSLRRKVSFSSPQSLHSYSSHKESRK 177
           + FD  LS +R+EKGK I+ I       Y K  ++   RKVSF SP  + SYSS+ E   
Sbjct: 386 DPFDQQLSERRKEKGKVILLINDQDHGHYSKRSKRISNRKVSFLSPGCIQSYSSNTEKNI 445

[Close]

BLAST of MELO3C032040.1 vs. ExPASy TrEMBL
Match: A0A5A7SZY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00140 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 67/98 (68.37%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 2   ENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSGA 61
           ENL+E KVKVKYNY+GFVPASI IKDD    +IIQ VPPP++RWLIERN +IHGTF+S  
Sbjct: 162 ENLIEAKVKVKYNYTGFVPASILIKDDICHEYIIQTVPPPESRWLIERNVKIHGTFKSEV 221

Query: 62  TRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNI 100
            RDFDEFNF  ETF F  FHAIP  NL EK   N T I
Sbjct: 222 ARDFDEFNFSSETFTFAGFHAIPPDNLREKVDVNITKI 259

[Close]

BLAST of MELO3C032040.1 vs. ExPASy TrEMBL
Match: A0A5A7SNW5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00270 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.3e-29
Identity = 82/195 (42.05%), Postives = 114/195 (58.46%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           ME L++ K+KV+YNY+GFVPASI I DD G   II  VPPPK RW +ER  R+HG+F+S 
Sbjct: 142 MEKLIDAKIKVRYNYTGFVPASIMITDDQGDNFIITTVPPPKARWFVERYVRVHGSFKSK 201

Query: 61  ATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDF 120
           A  +FDE N   E + + +F AIP      +   ++ N      +NHT+ K  NSS  ++
Sbjct: 202 AANEFDEHNPSAEVYTYNDFQAIPQGTTKSRGDYSYLNSDKHSISNHTQAKKNNSSEFEY 261

Query: 121 NFFDSILSRKRREKGKSIMNI-------YDKNQRKSLRRKVSFSSPQSLHSYSS------ 180
           + FD  L  KR+EKGK+I+ I       Y K  ++  +RKV F SP   HS+SS      
Sbjct: 262 DPFDQQLCEKRKEKGKAILIINDQDHDHYFKRSKRICKRKVFFLSPGCNHSHSSIMDKNI 321

Query: 181 HKESRKQSKLNSPQE 183
            ++S + S +N P E
Sbjct: 322 ERKSMEISTINEPFE 336

[Close]

BLAST of MELO3C032040.1 vs. ExPASy TrEMBL
Match: A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-26
Identity = 75/183 (40.98%), Postives = 109/183 (59.56%), Query Frame = 0


Query: 1   MENLVEEKVKVKYNYSGFVPASIQIKDDFGQVHIIQIVPPPKNRWLIERNARIHGTFRSG 60
           M+ L++ K+KV+YNY+GFVPASI I D+ G+  I+  V P + RWL+ERN R+HG+FR+ 
Sbjct: 306 MDKLIDAKIKVRYNYTGFVPASILITDNQGENFIVTTVQPAEARWLVERNVRVHGSFRTK 365

Query: 61  ATRDFDEFNFFLETFRFIEFHAIPSKNLGEKFQGNFTNIINAIEANHTKTKDYNSSCSDF 120
           A  +FD+ N   ET+ +  F AIP +        +  N      + HT+ K  NSS S++
Sbjct: 366 AADEFDQHNHLAETYTYNGFQAIPPEPTRTHGDYSIHNSDKHSISYHTQAKKNNSSESEY 425

Query: 121 NFFDSILSRKRREKGKSIMNI-------YDKNQRKSLRRKVSFSSPQSLHSYSSHKESRK 177
           + FD  LS +R+EKGK+I+ I       Y K  ++   RKVSF SP  + S SS+ E   
Sbjct: 426 DPFDQQLSDRRKEKGKAILIINDQNHGHYSKRSKRISNRKVSFLSPGGIQSNSSNTEINT 485

The following BLAST results are available for this feature:

BLAST of MELO3C032040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05442.1	2.8e-30	69.39	hypothetical protein E5676_scaffold83G001410 [Cucumis melo var. makuwa]	[more]
KAA0035247.1	6.1e-30	43.17	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK224...	[more]
KAA0034887.1	3.1e-29	68.37	hypothetical protein E6C27_scaffold103G00140 [Cucumis melo var. makuwa]	[more]
KAA0026125.1	8.9e-29	42.05	hypothetical protein E6C27_scaffold19G00740 [Cucumis melo var. makuwa] >TYK11585...	[more]
KAA0056838.1	3.2e-26	40.98	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993...	[more]

BLAST of MELO3C032040.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C032040.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2M8	1.3e-30	69.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFM9	3.0e-30	43.17	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7SZY7	1.5e-29	68.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7SNW5	4.3e-29	42.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BKT8	1.5e-26	40.98	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MELO3C032040.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..184

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C032040	MELO3C032040	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032040.1:exon:173642	MELO3C032040.1:exon:173642	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C032040.1:cds	MELO3C032040.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C032040.1	MELO3C032040.1-protein	polypeptide