MELO3C030710.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C030710.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	S-antigen protein-like
Location	chr04: 27890986 .. 27891267 (-)
Sequence length	282
RNA-Seq Expression	MELO3C030710.1
Synteny	MELO3C030710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTGGTTGGAGGCGGAAGAAGTTATGGTTGGAGGTGGAAGAATTTATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGTGGACGAAGGCGTCGTTGGAGGCGGAAGAAGGGAGAAAATCGTGAAGAATATATTGGAGAGGGAGAAAATCACGGAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTCTTTTTAAAACAAGGGTAATATTGGAATATATTTTTAAAAAA

mRNA sequence

ATGACGACTGGTTGGAGGCGGAAGAAGTTATGGTTGGAGGTGGAAGAATTTATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGTGGACGAAGGCGTCGTTGGAGGCGGAAGAAGGGAGAAAATCGTGAAGAATATATTGGAGAGGGAGAAAATCACGGAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTCTTTTTAAAACAAGGGTAATATTGGAATATATTTTTAAAAAA

Coding sequence (CDS)

ATGACGACTGGTTGGAGGCGGAAGAAGTTATGGTTGGAGGTGGAAGAATTTATGGTTGGAGGCGGAAGAAGTTGTGGTTGGAGACCGAAGATGACGACTGGTTGGAGGCGGAAGAAGGCGTCGTTGGAGGTGGACGAAGGCGTCGTTGGAGGCGGAAGAAGGGAGAAAATCGTGAAGAATATATTGGAGAGGGAGAAAATCACGGAGACGAATGGAGGAGGAGAAATTCGCGCCAGGATTCTTTTTAAAACAAGGGTAATATTGGAATATATTTTTAAAAAA

Protein sequence

MTTGWRRKKLWLEVEEFMVGGGRSCGWRPKMTTGWRRKKASLEVDEGVVGGGRREKIVKNILEREKITETNGGGEIRARILFKTRVILEYIFKK

Homology

[Close]

BLAST of MELO3C030710.1 vs. NCBI nr
Match: KAA0025306.1 (hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 15  EEFMVGGGRSCGWRPKMTTGWRRKKASLEVDEGVVGGGRREKIVKNILEREKITE 70
           EE +VGGGRSCGWRPKMTTGWR+KKASLE  EG+VGGGRR +  + +LE  K  E
Sbjct: 83  EEVVVGGGRSCGWRPKMTTGWRQKKASLEAKEGIVGGGRRRRAEEGVLENGKAEE 137

[Close]

BLAST of MELO3C030710.1 vs. NCBI nr
Match: TYJ97125.1 (S-antigen protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 9.5e-11
Identity = 39/68 (57.35%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 1  MTTGWRRKKLWLEVEEFMVGGGRSCGWRPKMT--------------TGWRRKKASLEVDE 55
          M TGWRRKKLWLE EE +VGGGR  GWR K                 GWRRKKASLE +E
Sbjct: 1  MMTGWRRKKLWLEAEEGVVGGGRRRGWRLKKAWLEAEEGVVGGGRRRGWRRKKASLEAEE 60

[Close]

BLAST of MELO3C030710.1 vs. NCBI nr
Match: KAA0047052.1 (hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-09
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 18 MVGGGRSC--------GWRPKMTTGWRRKKASLEVDEGVVGGGRREKIVKNILERE 66
          MVGGGRSC        GWRPKMTTGWRRKKASLE +EGVVGGG R +  + ++ ++
Sbjct: 1  MVGGGRSCGWRLKMTTGWRPKMTTGWRRKKASLEANEGVVGGGTRRRAEEGVVRKK 56

[Close]

BLAST of MELO3C030710.1 vs. NCBI nr
Match: KAA0063229.1 (lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.3e-07
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 1  MTTGWRRKKLWLEVEEFMVGGGRSCGWRPKMTTGWRRKKASLEVDEGVVGGGRREKIVKN 60
          M TGWRRKK  LE EE +VGG        ++   WRRKK  LE +EGVVGGGRR +  + 
Sbjct: 1  MMTGWRRKKASLEAEEGVVGG--------RIRRRWRRKKTFLEAEEGVVGGGRRRRAKEG 60

Query: 61 ILEREKITETNG 73
          +L  E   +  G
Sbjct: 61 VLNVENGKDEEG 64

[Close]

BLAST of MELO3C030710.1 vs. ExPASy TrEMBL
Match: A0A5A7SHI4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001610 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.9e-14
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 15  EEFMVGGGRSCGWRPKMTTGWRRKKASLEVDEGVVGGGRREKIVKNILEREKITE 70
           EE +VGGGRSCGWRPKMTTGWR+KKASLE  EG+VGGGRR +  + +LE  K  E
Sbjct: 83  EEVVVGGGRSCGWRPKMTTGWRQKKASLEAKEGIVGGGRRRRAEEGVLENGKAEE 137

[Close]

BLAST of MELO3C030710.1 vs. ExPASy TrEMBL
Match: A0A5D3BFA0 (S-antigen protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15972G00010 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-11
Identity = 39/68 (57.35%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 1  MTTGWRRKKLWLEVEEFMVGGGRSCGWRPKMT--------------TGWRRKKASLEVDE 55
          M TGWRRKKLWLE EE +VGGGR  GWR K                 GWRRKKASLE +E
Sbjct: 1  MMTGWRRKKLWLEAEEGVVGGGRRRGWRLKKAWLEAEEGVVGGGRRRGWRRKKASLEAEE 60

[Close]

BLAST of MELO3C030710.1 vs. ExPASy TrEMBL
Match: A0A5A7TUB6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00040 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 18 MVGGGRSC--------GWRPKMTTGWRRKKASLEVDEGVVGGGRREKIVKNILERE 66
          MVGGGRSC        GWRPKMTTGWRRKKASLE +EGVVGGG R +  + ++ ++
Sbjct: 1  MVGGGRSCGWRLKMTTGWRPKMTTGWRRKKASLEANEGVVGGGTRRRAEEGVVRKK 56

[Close]

BLAST of MELO3C030710.1 vs. ExPASy TrEMBL
Match: A0A5D3CTI7 (Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00120 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.0e-07
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 1  MTTGWRRKKLWLEVEEFMVGGGRSCGWRPKMTTGWRRKKASLEVDEGVVGGGRREKIVKN 60
          M TGWRRKK  LE EE +VGG        ++   WRRKK  LE +EGVVGGGRR +  + 
Sbjct: 1  MMTGWRRKKASLEAEEGVVGG--------RIRRRWRRKKTFLEAEEGVVGGGRRRRAKEG 60

Query: 61 ILEREKITETNG 73
          +L  E   +  G
Sbjct: 61 VLNVENGKDEEG 64

The following BLAST results are available for this feature:

BLAST of MELO3C030710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025306.1	2.0e-13	69.09	hypothetical protein E6C27_scaffold541G001610 [Cucumis melo var. makuwa]	[more]
TYJ97125.1	9.5e-11	57.35	S-antigen protein-like [Cucumis melo var. makuwa]	[more]
KAA0047052.1	2.3e-09	60.71	hypothetical protein E6C27_scaffold466G00040 [Cucumis melo var. makuwa]	[more]
KAA0063229.1	8.3e-07	47.22	lon protease 2-like [Cucumis melo var. makuwa] >TYK13479.1 lon protease 2-like [...	[more]

BLAST of MELO3C030710.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SHI4	9.9e-14	69.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BFA0	4.6e-11	57.35	S-antigen protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A5A7TUB6	1.1e-09	60.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CTI7	4.0e-07	47.22	Lon protease 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G...	[more]

BLAST of MELO3C030710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C030710	MELO3C030710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030710.1:exon:123026	MELO3C030710.1:exon:123026	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030710.1:cds	MELO3C030710.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C030710.1	MELO3C030710.1-protein	polypeptide