MELO3C030546.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C030546.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cyclic nucleotide-gated ion channel 1-like isoform X3
Location	chr02: 18787624 .. 18788251 (+)
Sequence length	550
RNA-Seq Expression	MELO3C030546.1
Synteny	MELO3C030546.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAATGTTGAAATAGATTTCTGGATAGATTATTATAAATTCCAAAAGAAGAAGGAAATCCATGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTAAATTTAAAAACACTACTCGACGTGTTTCCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACTTTGTTGGGATATCCTAAAGAGGGTGAGTTTTGTTGCGTACATTTGTGAAGTAACATGGTATAATAGAAACAAACAACCTTGATCAATGTTTCATTGGTAGGTTTCAATGCTTAAAGAATTTGAAGAGATGATGAAGGATATGAAGCTAATGGTTTTTGCAGAGCAGAGCTATATTATTTGAGAGGGGGAGCCTGTTGAGCAGATGCTATTATTCACAAAAGGTTTGGGATTGACATTTAGCAAGAGCACTGGAACTAGAACAACGATTAACACTTTTAGAAAAGATGATTTGTTTGGGGAGCAATTATTGAATTAGGTAGCAGAAAATCTTCCTGTATTTGAAATTCCTTTGTTCAAAGGTACTCTCAAGACACAGACACAAAGGGAAACCTTCGCTCTCAAGGCTATCAATCCACAATATCATACCAAGTGGGACACAAATACATATAGGTTAAGTTAA

mRNA sequence

AAAAAAAAATGTTGAAATAGATTTCTGGATAGATTATTATAAATTCCAAAAGAAGAAGGAAATCCATGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTAAATTTAAAAACACTACTCGACGTGTTTCCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACTTTGTTGGGATATCCTAAAGAGGGTTTCAATGCTTAAAGAATTTGAAGAGATGATGAAGGATATGAAGCTAATGGTTTTTGCAGAGCAGAGCTATATTATTTGAGAGGGGGAGCCTGTTGAGCAGATGCTATTATTCACAAAAGGTTTGGGATTGACATTTAGCAAGAGCACTGGAACTAGAACAACGATTAACACTTTTAGAAAAGATGATTTGTTTGGGGAGCAATTATTGAATTAGGTAGCAGAAAATCTTCCTGTATTTGAAATTCCTTTGTTCAAAGGTACTCTCAAGACACAGACACAAAGGGAAACCTTCGCTCTCAAGGCTATCAATCCACAATATCATACCAAGTGGGACACAAATACATATAGGTTAAGTTAA

Coding sequence (CDS)

AAAAAAAATGTTGAAATAGATTTCTGGATAGATTATTATAAATTCCAAAAGAAGAAGGAAATCCATGAGTTTGTGAGAGACAAGTTTGAGTGGAAAAATGATGTAAATTTAAAAACACTACTCGACGTGTTTCCGTCTCCATTCGTTGAGGAGATAAAGAAAGAACTTTGTTGGGATATCCTAAAGAGGGTTTCAATGCTTAAAGAATTTGAAGAGATGATGAAGGATATGAAGCTAATGGTTTTTGCAGAGCAGAGCTATATTATTTGA

Protein sequence

KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDILKRVSMLKEFEEMMKDMKLMVFAEQSYII

Homology

[Close]

BLAST of MELO3C030546.1 vs. NCBI nr
Match: TYK31713.1 (cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 3.1e-35
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK VEIDFWIDYYKFQKKKEI EFV DKFEW+NDVNLKTLLDVFPSPFVEEIKKELCWDI
Sbjct: 311 KKGVEIDFWIDYYKFQKKKEIKEFVIDKFEWQNDVNLKTLLDVFPSPFVEEIKKELCWDI 370

Query: 61  LKRVSMLKEFEE-----MMKDMKLMVFAEQSYII 90
           LKRV MLKEFEE     MMKDMK MVF EQSYII
Sbjct: 371 LKRVPMLKEFEEEKLTKMMKDMKPMVFGEQSYII 404

[Close]

BLAST of MELO3C030546.1 vs. NCBI nr
Match: XP_016900693.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo] >TYK21168.1 cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK+VEID WIDYY FQKKKEI EFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKELCWDI
Sbjct: 348 KKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCWDI 407

Query: 61  LKRVSMLKEFE-----EMMKDMKLMVFAEQSYII 90
           LKRV MLKEFE     EMMKDMK MVF EQSYII
Sbjct: 408 LKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYII 441

[Close]

BLAST of MELO3C030546.1 vs. NCBI nr
Match: XP_008449547.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK+VEID WIDYY FQKKKEI EFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKELCWDI
Sbjct: 352 KKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCWDI 411

Query: 61  LKRVSMLKEFE-----EMMKDMKLMVFAEQSYII 90
           LKRV MLKEFE     EMMKDMK MVF EQSYII
Sbjct: 412 LKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYII 445

[Close]

BLAST of MELO3C030546.1 vs. NCBI nr
Match: XP_016900694.1 (PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] >XP_016900695.1 PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK+VEID WIDYY FQKKKEI EFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKELCWDI
Sbjct: 245 KKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCWDI 304

Query: 61  LKRVSMLKEFE-----EMMKDMKLMVFAEQSYII 90
           LKRV MLKEFE     EMMKDMK MVF EQSYII
Sbjct: 305 LKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYII 338

[Close]

BLAST of MELO3C030546.1 vs. NCBI nr
Match: KAA0061693.1 (cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.0e-34
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK+VEID WIDYY FQKKKEI EFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKELCWDI
Sbjct: 353 KKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCWDI 412

Query: 61  LKRVSMLKEFE-----EMMKDMKLMVFAEQSYII 90
           LKRV MLKEFE     EMMKDMK MVF EQSYII
Sbjct: 413 LKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYII 446

[Close]

BLAST of MELO3C030546.1 vs. ExPASy TrEMBL
Match: A0A5D3E6K4 (Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold788G00140 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 82/94 (87.23%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK VEIDFWIDYYKFQKKKEI EFV DKFEW+NDVNLKTLLDVFPSPFVEEIKKELCWDI
Sbjct: 311 KKGVEIDFWIDYYKFQKKKEIKEFVIDKFEWQNDVNLKTLLDVFPSPFVEEIKKELCWDI 370

Query: 61  LKRVSMLKEFEE-----MMKDMKLMVFAEQSYII 90
           LKRV MLKEFEE     MMKDMK MVF EQSYII
Sbjct: 371 LKRVPMLKEFEEEKLTKMMKDMKPMVFGEQSYII 404

[Close]

BLAST of MELO3C030546.1 vs. ExPASy TrEMBL
Match: A0A1S4DYA3 (cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491398 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.6e-35
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK+VEID WIDYY FQKKKEI EFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKELCWDI
Sbjct: 245 KKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCWDI 304

Query: 61  LKRVSMLKEFE-----EMMKDMKLMVFAEQSYII 90
           LKRV MLKEFE     EMMKDMK MVF EQSYII
Sbjct: 305 LKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYII 338

[Close]

BLAST of MELO3C030546.1 vs. ExPASy TrEMBL
Match: A0A5A7V0L3 (Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00660 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.6e-35
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK+VEID WIDYY FQKKKEI EFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKELCWDI
Sbjct: 353 KKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCWDI 412

Query: 61  LKRVSMLKEFE-----EMMKDMKLMVFAEQSYII 90
           LKRV MLKEFE     EMMKDMK MVF EQSYII
Sbjct: 413 LKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYII 446

[Close]

BLAST of MELO3C030546.1 vs. ExPASy TrEMBL
Match: A0A5D3DCD7 (Cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00390 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.6e-35
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK+VEID WIDYY FQKKKEI EFVRDKFEWKNDVNLKTLLDVF SPFVEEIKKELCWDI
Sbjct: 348 KKDVEIDLWIDYYNFQKKKEIKEFVRDKFEWKNDVNLKTLLDVFSSPFVEEIKKELCWDI 407

Query: 61  LKRVSMLKEFE-----EMMKDMKLMVFAEQSYII 90
           LKRV MLKEFE     EMMKDMK MVF EQSYII
Sbjct: 408 LKRVLMLKEFEEEKLKEMMKDMKPMVFGEQSYII 441

[Close]

BLAST of MELO3C030546.1 vs. ExPASy TrEMBL
Match: A0A5A7SIY4 (Cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2405G00090 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 9.6e-35
Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   KKNVEIDFWIDYYKFQKKKEIHEFVRDKFEWKNDVNLKTLLDVFPSPFVEEIKKELCWDI 60
           KK VEIDFWIDYYKFQKKKEI EFV DKFEW+NDVNLKTLLDVFPSPFVEEIKKELCWDI
Sbjct: 182 KKGVEIDFWIDYYKFQKKKEIKEFVIDKFEWQNDVNLKTLLDVFPSPFVEEIKKELCWDI 241

Query: 61  LKRVSMLKEFEE-----MMKDMKLMVFAEQSYII 90
           LK V MLKEFEE     MMKDMK MVF EQSYII
Sbjct: 242 LKGVPMLKEFEEEKLKKMMKDMKPMVFGEQSYII 275

The following BLAST results are available for this feature:

BLAST of MELO3C030546.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31713.1	3.1e-35	87.23	cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_016900693.1	2.0e-34	86.17	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X2 [Cucumis melo] ...	[more]
XP_008449547.1	2.0e-34	86.17	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo]	[more]
XP_016900694.1	2.0e-34	86.17	PREDICTED: cyclic nucleotide-gated ion channel 1-like isoform X3 [Cucumis melo] ...	[more]
KAA0061693.1	2.0e-34	86.17	cyclic nucleotide-gated ion channel 1-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030546.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030546.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E6K4	1.5e-35	87.23	Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A1S4DYA3	9.6e-35	86.17	cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7V0L3	9.6e-35	86.17	Cyclic nucleotide-gated ion channel 1-like isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A5D3DCD7	9.6e-35	86.17	Cyclic nucleotide-gated ion channel 1-like isoform X2 OS=Cucumis melo var. makuw...	[more]
A0A5A7SIY4	9.6e-35	86.17	Cyclic nucleotide-gated ion channel 1-like isoform X3 OS=Cucumis melo var. makuw...	[more]

BLAST of MELO3C030546.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C030546	MELO3C030546	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030546.1:exon:56352	MELO3C030546.1:exon:56352	exon
MELO3C030546.1:exon:56353	MELO3C030546.1:exon:56353	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030546.1:five_prime_utr	MELO3C030546.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030546.1:cds	MELO3C030546.1:cds	CDS
MELO3C030546.1:cds	MELO3C030546.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030546.1:three_prime_utr	MELO3C030546.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C030546.1	MELO3C030546.1-protein	polypeptide