MELO3C030459.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C030459.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr04: 9535935 .. 9536105 (+)
Sequence length	171
RNA-Seq Expression	MELO3C030459.jh1.t1
Synteny	MELO3C030459.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAATGGTGGTCGCGCGACTTGGTTAGACATATCTTGGTAGTTGTAGTCTTCAGAGTTGGAGATTCGTGGATGGTGGTGAAGACTAAGCACGGTGGTGGTGAGGACTGTACAAGAGGACGGTGGTCACGAGGTCTGGACACGATTGGTGTGGCCGCATCTGTTTAA

mRNA sequence

ATGGTGCAATGGTGGTCGCGCGACTTGGTTAGACATATCTTGGTAGTTGTAGTCTTCAGAGTTGGAGATTCGTGGATGGTGGTGAAGACTAAGCACGGTGGTGGTGAGGACTGTACAAGAGGACGGTGGTCACGAGGTCTGGACACGATTGGTGTGGCCGCATCTGTTTAA

Coding sequence (CDS)

ATGGTGCAATGGTGGTCGCGCGACTTGGTTAGACATATCTTGGTAGTTGTAGTCTTCAGAGTTGGAGATTCGTGGATGGTGGTGAAGACTAAGCACGGTGGTGGTGAGGACTGTACAAGAGGACGGTGGTCACGAGGTCTGGACACGATTGGTGTGGCCGCATCTGTTTAA

Protein sequence

MVQWWSRDLVRHILVVVVFRVGDSWMVVKTKHGGGEDCTRGRWSRGLDTIGVAASV

Homology

[Close]

BLAST of MELO3C030459.jh1.t1 vs. NCBI nr
Match: KAA0063488.1 (hypothetical protein E6C27_scaffold977G00790 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 2.62e-32
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MVQWWSRDLVRHILVVVVFRVGDSWMVVKTKHGGGEDCTRGRWSRGLDTIGVAASV 56
           MVQWWSRDLV+HILVVVVFRVGDSWMVVKTKHGGGEDCTRG WSRGLDTIGVAASV
Sbjct: 54  MVQWWSRDLVKHILVVVVFRVGDSWMVVKTKHGGGEDCTRGWWSRGLDTIGVAASV 109

[Close]

BLAST of MELO3C030459.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V7C6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold977G00790 PE=4 SV=1)

HSP 1 Score: 117 bits (292), Expect = 1.27e-32
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MVQWWSRDLVRHILVVVVFRVGDSWMVVKTKHGGGEDCTRGRWSRGLDTIGVAASV 56
           MVQWWSRDLV+HILVVVVFRVGDSWMVVKTKHGGGEDCTRG WSRGLDTIGVAASV
Sbjct: 54  MVQWWSRDLVKHILVVVVFRVGDSWMVVKTKHGGGEDCTRGWWSRGLDTIGVAASV 109

The following BLAST results are available for this feature:

BLAST of MELO3C030459.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063488.1	2.62e-32	96.43	hypothetical protein E6C27_scaffold977G00790 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030459.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030459.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7C6	1.27e-32	96.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C030459.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C030459.jh1	MELO3C030459.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030459.jh1.t1.exon	MELO3C030459.jh1.t1.exon	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030459.jh1.t1.start_codon	MELO3C030459.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030459.jh1.t1.cds	MELO3C030459.jh1.t1.cds	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030459.jh1.t1.stop_codon	MELO3C030459.jh1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C030459.jh1.t1	MELO3C030459.jh1.t1-protein	polypeptide