MELO3C025939.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C025939.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein MNN4-like
Location	chr11: 13989123 .. 13989728 (+)
Sequence length	606
RNA-Seq Expression	MELO3C025939.1
Synteny	MELO3C025939.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATACCAAGAAACGTGAGCGAGATAATCTGTGAGCATATCATTGCATGTGTCAAGCATCCTCATGATGCGAGGCCCTTCCCACATTTGATTGAAGAACTTTCTTTGAAGGCATGTATGGCGTTAGAAAAAATCCCTCGGACTGTGGTAAAACATGATATTTGTACAGCAACTAGTCTTCACCACATAATCAATCTCCATAGAAACAAAACAAAAACTAAACGCCTAAAGACGAAGAAAGAAGGAAAAATTAAGATTGTTAATGAAGTGGAGATAGAAGAAGAAGTAGAAGAAGAAGAGAGGGAAAATACACAAGTTCCCTTAAAGCAAAAGAGAAAATGCAAGGAGGAGGCTTCAAGCTCAAAGAAGAAGATAAAATTTGAAGCTAAGGACTCCAGGGACCCATTGTCTCTCGCACTGACCATCTTGCCCCAAGACCAAACGCCTAAAGAAACCATTTCGCCCCCAAAATTCAAAACCACTAAGGCCAAGATCAGAAGCTTACCATCCGGAACTCCACCACCACCACTTTTATCAACTAAAAAACAAACTCCTTCAACATCCAAAACCAAATCGTCTAACCCTTCCTACAAAATCTAA

mRNA sequence

ATGGAGGAGATACCAAGAAACGTGAGCGAGATAATCTGTGAGCATATCATTGCATGTGTCAAGCATCCTCATGATGCGAGGCCCTTCCCACATTTGATTGAAGAACTTTCTTTGAAGGCATGTATGGCGTTAGAAAAAATCCCTCGGACTGTGGTAAAACATGATATTTGTACAGCAACTAGTCTTCACCACATAATCAATCTCCATAGAAACAAAACAAAAACTAAACGCCTAAAGACGAAGAAAGAAGGAAAAATTAAGATTGTTAATGAAGTGGAGATAGAAGAAGAAGTAGAAGAAGAAGAGAGGGAAAATACACAAGTTCCCTTAAAGCAAAAGAGAAAATGCAAGGAGGAGGCTTCAAGCTCAAAGAAGAAGATAAAATTTGAAGCTAAGGACTCCAGGGACCCATTGTCTCTCGCACTGACCATCTTGCCCCAAGACCAAACGCCTAAAGAAACCATTTCGCCCCCAAAATTCAAAACCACTAAGGCCAAGATCAGAAGCTTACCATCCGGAACTCCACCACCACCACTTTTATCAACTAAAAAACAAACTCCTTCAACATCCAAAACCAAATCGTCTAACCCTTCCTACAAAATCTAA

Coding sequence (CDS)

ATGGAGGAGATACCAAGAAACGTGAGCGAGATAATCTGTGAGCATATCATTGCATGTGTCAAGCATCCTCATGATGCGAGGCCCTTCCCACATTTGATTGAAGAACTTTCTTTGAAGGCATGTATGGCGTTAGAAAAAATCCCTCGGACTGTGGTAAAACATGATATTTGTACAGCAACTAGTCTTCACCACATAATCAATCTCCATAGAAACAAAACAAAAACTAAACGCCTAAAGACGAAGAAAGAAGGAAAAATTAAGATTGTTAATGAAGTGGAGATAGAAGAAGAAGTAGAAGAAGAAGAGAGGGAAAATACACAAGTTCCCTTAAAGCAAAAGAGAAAATGCAAGGAGGAGGCTTCAAGCTCAAAGAAGAAGATAAAATTTGAAGCTAAGGACTCCAGGGACCCATTGTCTCTCGCACTGACCATCTTGCCCCAAGACCAAACGCCTAAAGAAACCATTTCGCCCCCAAAATTCAAAACCACTAAGGCCAAGATCAGAAGCTTACCATCCGGAACTCCACCACCACCACTTTTATCAACTAAAAAACAAACTCCTTCAACATCCAAAACCAAATCGTCTAACCCTTCCTACAAAATCTAA

Protein sequence

MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTATSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEASSSKKKIKFEAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSLPSGTPPPPLLSTKKQTPSTSKTKSSNPSYKI

Homology

[Close]

BLAST of MELO3C025939.1 vs. NCBI nr
Match: KAA0067069.1 (hypothetical protein E6C27_scaffold38G001190 [Cucumis melo var. makuwa] >TYK26305.1 hypothetical protein E5676_scaffold14G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 3.3e-45
Identity = 119/167 (71.26%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 36  LSLKACMA-LEKIPRTVVKHDICTATSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEI 95
           L LKAC A LEK P+TVVK DICT  +L  IINLHRNK KTK LKTKKEG+  +V+EVE 
Sbjct: 2   LYLKACPAFLEKFPQTVVKDDICTIPNLPRIINLHRNKEKTKCLKTKKEGQTTVVDEVET 61

Query: 96  EEEVEEEERENTQVPLKQKRKCKEEASSSKKKIKFEAKDSRDPLSLALTILPQDQTPKET 155
           +   EEEERE+ QVPLK+KRK +EE SS K+K++ +AKDSRDPL LALTI+PQDQTPKET
Sbjct: 62  K---EEEEREDKQVPLKRKRKGEEEDSSLKEKMRLKAKDSRDPLYLALTIVPQDQTPKET 121

Query: 156 ISPPKFKTTKAKIRSLPSGTPPPPLLSTKKQTPSTSKTKSSNPSYKI 202
           IS PK KTT AKI S PSGTPPPPL S +KQTPSTSKTKS +PS+KI
Sbjct: 122 ISLPKSKTTMAKIISSPSGTPPPPLPSIQKQTPSTSKTKSPSPSHKI 165

[Close]

BLAST of MELO3C025939.1 vs. NCBI nr
Match: KAA0058409.1 (hypothetical protein E6C27_scaffold409G001210 [Cucumis melo var. makuwa] >TYK04704.1 hypothetical protein E5676_scaffold76994G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-24
Identity = 76/142 (53.52%), Postives = 104/142 (73.24%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           +EEI  NV +IICEHI A V+HPHDARP P+LIE++ LKAC AL+ + +T+VK +ICT T
Sbjct: 21  IEEILVNVGKIICEHIQAWVRHPHDARPLPNLIEQIFLKACFALKNLLKTMVKDEICTIT 80

Query: 61  SLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEA 120
           S+ H+INL++NK + K LKTK+  K+K  +++EI+E  EEE  + T  PL +K K + +A
Sbjct: 81  SVSHMINLNKNKAEDKCLKTKEIEKVKEDDKMEIDE--EEEREDETLSPLIRKMKGENKA 140

Query: 121 -SSSKKKIKFEAKDSRDPLSLA 142
             S K+K K +AKDSRD L LA
Sbjct: 141 FGSRKRKRKPKAKDSRDLLPLA 160

[Close]

BLAST of MELO3C025939.1 vs. NCBI nr
Match: TYJ97737.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 5.2e-22
Identity = 82/200 (41.00%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           MEEIP N+ +II EHI A VK P  ARPFP+LIE+L LKAC AL+K+P+  VK ++ + +
Sbjct: 72  MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 131

Query: 61  SLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEA 120
             HHII +H+NKTK KRLKTK++                                 +EEA
Sbjct: 132 IRHHIIAIHKNKTKLKRLKTKQDD--------------------------------EEEA 191

Query: 121 SSSKKKIKFEAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSLP--SGTPPPP 180
           S SKK    +AKDS++ LS A T +P+ + P    SP K K++KA     P  S TPPPP
Sbjct: 192 SESKKIKTCKAKDSKETLSFASTKIPKKKKPTNLPSPNKSKSSKATSSQTPTKSKTPPPP 239

Query: 181 LLSTKKQTPSTSKTKSSNPS 199
              +K          +S+P+
Sbjct: 252 PEKSKSPILFQEIQNTSSPN 239

[Close]

BLAST of MELO3C025939.1 vs. NCBI nr
Match: KAA0066376.1 (hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 5.7e-21
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           MEE+  N+ EIICEHI+ CVKHP+ AR FPHLIE+L LK C+ALEK+P+  VK  +CT  
Sbjct: 118 MEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTI 177

Query: 61  SLHHIINLHRNKTKTKRLKTKKEG 85
           +L  II +H+NK + KRLKTKKEG
Sbjct: 178 TLPRIIAIHKNKARLKRLKTKKEG 201

[Close]

BLAST of MELO3C025939.1 vs. NCBI nr
Match: TYK00908.1 (hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 112.1 bits (279), Expect = 5.7e-21
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           MEE+  N+ EIICEHI+ CVKHP+ AR FPHLIE+L LK C+ALEK+P+  VK  +CT  
Sbjct: 21  MEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTI 80

Query: 61  SLHHIINLHRNKTKTKRLKTKKEG 85
           +L  II +H+NK + KRLKTKKEG
Sbjct: 81  TLPRIIAIHKNKARLKRLKTKKEG 104

[Close]

BLAST of MELO3C025939.1 vs. ExPASy TrEMBL
Match: A0A5A7VP61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00820 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 119/167 (71.26%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 36  LSLKACMA-LEKIPRTVVKHDICTATSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEI 95
           L LKAC A LEK P+TVVK DICT  +L  IINLHRNK KTK LKTKKEG+  +V+EVE 
Sbjct: 2   LYLKACPAFLEKFPQTVVKDDICTIPNLPRIINLHRNKEKTKCLKTKKEGQTTVVDEVET 61

Query: 96  EEEVEEEERENTQVPLKQKRKCKEEASSSKKKIKFEAKDSRDPLSLALTILPQDQTPKET 155
           +   EEEERE+ QVPLK+KRK +EE SS K+K++ +AKDSRDPL LALTI+PQDQTPKET
Sbjct: 62  K---EEEEREDKQVPLKRKRKGEEEDSSLKEKMRLKAKDSRDPLYLALTIVPQDQTPKET 121

Query: 156 ISPPKFKTTKAKIRSLPSGTPPPPLLSTKKQTPSTSKTKSSNPSYKI 202
           IS PK KTT AKI S PSGTPPPPL S +KQTPSTSKTKS +PS+KI
Sbjct: 122 ISLPKSKTTMAKIISSPSGTPPPPLPSIQKQTPSTSKTKSPSPSHKI 165

[Close]

BLAST of MELO3C025939.1 vs. ExPASy TrEMBL
Match: A0A5D3C0C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76994G00060 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 76/142 (53.52%), Postives = 104/142 (73.24%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           +EEI  NV +IICEHI A V+HPHDARP P+LIE++ LKAC AL+ + +T+VK +ICT T
Sbjct: 21  IEEILVNVGKIICEHIQAWVRHPHDARPLPNLIEQIFLKACFALKNLLKTMVKDEICTIT 80

Query: 61  SLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEA 120
           S+ H+INL++NK + K LKTK+  K+K  +++EI+E  EEE  + T  PL +K K + +A
Sbjct: 81  SVSHMINLNKNKAEDKCLKTKEIEKVKEDDKMEIDE--EEEREDETLSPLIRKMKGENKA 140

Query: 121 -SSSKKKIKFEAKDSRDPLSLA 142
             S K+K K +AKDSRD L LA
Sbjct: 141 FGSRKRKRKPKAKDSRDLLPLA 160

[Close]

BLAST of MELO3C025939.1 vs. ExPASy TrEMBL
Match: A0A5D3BF32 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00380 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 82/200 (41.00%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           MEEIP N+ +II EHI A VK P  ARPFP+LIE+L LKAC AL+K+P+  VK ++ + +
Sbjct: 72  MEEIPVNIDKIISEHITAWVKLPRRARPFPYLIEKLCLKACPALDKLPQVEVKDEVWSNS 131

Query: 61  SLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEA 120
             HHII +H+NKTK KRLKTK++                                 +EEA
Sbjct: 132 IRHHIIAIHKNKTKLKRLKTKQDD--------------------------------EEEA 191

Query: 121 SSSKKKIKFEAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSLP--SGTPPPP 180
           S SKK    +AKDS++ LS A T +P+ + P    SP K K++KA     P  S TPPPP
Sbjct: 192 SESKKIKTCKAKDSKETLSFASTKIPKKKKPTNLPSPNKSKSSKATSSQTPTKSKTPPPP 239

Query: 181 LLSTKKQTPSTSKTKSSNPS 199
              +K          +S+P+
Sbjct: 252 PEKSKSPILFQEIQNTSSPN 239

[Close]

BLAST of MELO3C025939.1 vs. ExPASy TrEMBL
Match: A0A5A7VJ48 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004490 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           MEE+  N+ EIICEHI+ CVKHP+ AR FPHLIE+L LK C+ALEK+P+  VK  +CT  
Sbjct: 118 MEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTI 177

Query: 61  SLHHIINLHRNKTKTKRLKTKKEG 85
           +L  II +H+NK + KRLKTKKEG
Sbjct: 178 TLPRIIAIHKNKARLKRLKTKKEG 201

[Close]

BLAST of MELO3C025939.1 vs. ExPASy TrEMBL
Match: A0A5D3BPB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00710 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-21
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           MEE+  N+ EIICEHI+ CVKHP+ AR FPHLIE+L LK C+ALEK+P+  VK  +CT  
Sbjct: 21  MEELQVNLGEIICEHILECVKHPYGARSFPHLIEKLCLKTCLALEKLPQVEVKDGMCTTI 80

Query: 61  SLHHIINLHRNKTKTKRLKTKKEG 85
           +L  II +H+NK + KRLKTKKEG
Sbjct: 81  TLPRIIAIHKNKARLKRLKTKKEG 104

The following BLAST results are available for this feature:

BLAST of MELO3C025939.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C025939.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067069.1	3.3e-45	71.26	hypothetical protein E6C27_scaffold38G001190 [Cucumis melo var. makuwa] >TYK2630...	[more]
KAA0058409.1	3.2e-24	53.52	hypothetical protein E6C27_scaffold409G001210 [Cucumis melo var. makuwa] >TYK047...	[more]
TYJ97737.1	5.2e-22	41.00	protein MNN4-like [Cucumis melo var. makuwa]	[more]
KAA0066376.1	5.7e-21	61.90	hypothetical protein E6C27_scaffold21G004490 [Cucumis melo var. makuwa]	[more]
TYK00908.1	5.7e-21	61.90	hypothetical protein E5676_scaffold602G00710 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C025939.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VP61	1.6e-45	71.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C0C3	1.6e-24	53.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BF32	2.5e-22	41.00	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G0...	[more]
A0A5A7VJ48	2.8e-21	61.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BPB1	2.8e-21	61.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C025939.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..201

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025939	MELO3C025939	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025939.1:exon:321374	MELO3C025939.1:exon:321374	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025939.1:cds	MELO3C025939.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025939.1	MELO3C025939.1-protein	polypeptide