MELO3C025765.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C025765.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA polymerase epsilon subunit C
Location	chr11: 26083614 .. 26086660 (-)
Sequence length	1076
RNA-Seq Expression	MELO3C025765.1
Synteny	MELO3C025765.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTTTCACAAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGAAATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGGTTTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTGAGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGTTATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGTAAGCCTTTAAACACCATCACTAACGCACGCACGCACGCACGCACCCAAAATTGCTCAATTTCAGCTCTATTGAAGAATTAGGTATTTTTCTTATGAAATTGGGTTTTCTGTGTCCGTTAACTTCTTAATTGTTGCAGGAGATGTTTCTTGTACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATGTAATGTTTCTGTTCTCTATTTTGATGCTCCTGTCTATTTTCCTTTGTTGTTATATGCTCCATGTTCATTTGCATCTCTTGCATGGACTCATACGGTTTTGCCTTTGCTCTTCTTGTCAGTTTTCTATAATGAAAGTTAGACCTGTGAACATATTTTAAAAAGGTTAAAACTTGGATCTGAAAACAGTTGATTGGATTCCAGCTTCACTATCTTTCATGGTCATCATGACGGGGCTTTACCTTTTTATAATCTGAGCTTTTAGCATGATGGTCGTAGTAGTTTAACACGGATTGTGACCTTAGAATTAGGTTACTCCAATTACTTGGTCAAGGGACTTGAATTATGTGAGCATTAATCTATCATACTACAGTGTTGTAGAGGATTGCCGACTTATATTATCATTGCAAAATTCTACAGCAGCTGAATCCAGCCTTTCGATAAATCATATCGTTAAGCTACATTATGTCTAGCTGGATGATTTACTCACCCTAACTATGTCTAGCGATAGGTTTCCAATAAATTCACATGTATGAGGAGGAATAATAAATAAGCAGTGGTAGCAAAGTTGATAAATTTGATACTTGAGATGGGTGTAAGTTGGTTGGGAAGGGGCACTGTAACTGTTATCAGGAGTCTTTCTTTTGGACAACTTCATGTTAGGTGGCAAGGGATAGGAAGATAGAGGATTGGAGAAGTACTTATTTGGGAGTCGAAAAAGGGGAAGGCAGTGTGAATCTATTGTGAAATTTCAATTTGGATCAGGAGAGAAAGAAAAACTCATTGATCTCTGTTAGGCCTCGAGTATTGAAGAAACCTGAGGAAGGGCATATTGGGAAAGGAAGGAAAAACAGTTACATTAATGAGGGGAGGTGGGATCCTGCATGTACTGATGTCAAAAGGCTGGTGCAGAGGGGAATAAGGCATTTGTGAAAAGGGCAGCTGATATTTTGATGGCGTTTATTCACTAGCGTGGAGGAGAAACAGCTCACTCCTGGAGGCCCTGAGTTTTCTTGATTCATTTACGTTGTTTGGCTATCTTTGCTTATCGTTCTATTTGGATTACTAGAGAGAAGGAAAACTTGTGCATCTATTCCTTTGTTTTCTTCTGTTAACCACTAATAGATGGCAAATTCAAATCTCTCTCATCTGGCTAGACAATTTTAACCAGACGATGCTGAAATTTTGATAAGTCTTCCGTTTTACTTATTGTTTCATTGTATCTGCTATTACTGTTAGTTTCAAATGTGAGAATTCAAAGGATACTTCTTTTTTTTTGTTGATTGACCACATTTTGATGGTGGGGAATGTGGGAGGTTGGAAAGGAAAAAAAGAGGTCTTTTCTTCTACCCCGACCAGAGTAACCTATCTAGTTATGAAAATATGAATGTCGGATCTGATAGCTCTGGAACCATAGAGCTCTCTTCTATTAAAATTGGGAGAGGAAAAAGTAAACCCTGGTTCTTCAAGTCCAAAATAACTCGGAATCAAAACATGTATGCATTGAAAATGAAATATTCATTATGAATCTCCATTTTTTGTGTTTCTTTTTTGAGCATCATTGAGTTTCGAGGCATGTACAGTTTTCAAAATGTCAAATCAAGTGTATCCAACAAAACTGTCGTACTGAGGTTAGACCAATGGTAATTGGCATATAATTCCTCCCTTTGAGATTGGAGGTTTAATCTTCCATCCCCTACAATTATTGTACTTAACAAATGAATATACCATAATATTTCCTCCCATAGATCAATGTTTATCCTGCTTGAAATCAAAACTATACAATTTGCTTCCTTGCAATTACCAAACCATTACTTTAGATTTATTTTCTTGGAAGTAATAGTAAGATTCTCCTTTGTTGTTGCAGCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGGTATATACACGTGCCTATTACATAATGCTTAAATACTGCTATTATTAGAATGACGCTTCATCTCTAAACCGAAAGACAGCCTTATAAAACGTCACAAATGTTCTTTTCCATCTCCAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAAGCTTCTCGATATTTTATTTTGAACACTTCATCTTGTTCTATGGATGTGTTATATATTTAGGTATCGTTCTTGTCATGTATTGAATCCTAGGAAGTTAGATACAACATACAACATACATTTTTTTTTAAACTACGTACCTGTAACATTTTTATCGAGATCTTAAATCTAATCTAACATTCATTCTAACACGATTATTCTTCTATGCATTTATTGAACTAAAAGTACTC

mRNA sequence

CTAATTTTCACAAACAACCAAACATTAACAATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGAAATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGGTTTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTGAGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGTTATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTTGTACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATGTAATGAGAGAAAGAAAAACTCATTGATCTCTGTTAGGCCTCGAGTATTGAAGAAACCTGAGGAAGGGCATATTGGGAAAGGAAGGAAAAACAGTTACATTAATGAGGGGAGGTGGGATCCTGCATTAAGATTCTCCTTTGTTGTTGCAGCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAAGCTTCTCGATATTTTATTTTGAACACTTCATCTTGTTCTATGGATGTGTTATATATTTAGGTATCGTTCTTGTCATGTATTGAATCCTAGGAAGTTAGATACAACATACAACATACATTTTTTTTTAAACTACGTACCTGTAACATTTTTATCGAGATCTTAAATCTAATCTAACATTCATTCTAACACGATTATTCTTCTATGCATTTATTGAACTAAAAGTACTC

Coding sequence (CDS)

ATGGCATCATCCAAAAAATCAAGTACCGAAGCGAAGGGCAAAGAAGCGGGAACCTCAAAGCCAGCCCCCAAAGCCAAGACCCACAACAATGCCAGAAATTCCGACAAGGAAATCTCAAAGAAGAAGAAGAAGAAGAAGAAGATTAGCATTAGCACCAACAATGGCTCCGTCAAGGACAATGAGGTTTTAGCTGTTTCTCCTCCAGGAGGCTCAGCCTCTGAGGACGACGATGCCGCCGATGAAGACAAAGCCGAAACCACAAGTAGAAAACATAAGACCTCCAAATCGAAGAAAGTTAAACGGAACCATGCCAAGGAAGAAGATAATGGTTATGCCGAAGAAGAAGAAGAAGAAGCCGAGGAGAAGATTTATAAATTCCCTATGCATCGGATCAAGAAAATCATGAGGGATGAAAATTCTGATTTGCGTATTAATCAGGAAGCTTTGTTTCTCGTCAACAAAGCTTCGGAGATGTTTCTTGTACAATTTTGCAAAGATGCATATGCATGCTGTGCTCAGGATCGCAAAAAGTCTCTTGCTTACAAGCATCTATGTAATGAGAGAAAGAAAAACTCATTGATCTCTGTTAGGCCTCGAGTATTGAAGAAACCTGAGGAAGGGCATATTGGGAAAGGAAGGAAAAACAGTTACATTAATGAGGGGAGGTGGGATCCTGCATTAAGATTCTCCTTTGTTGTTGCAGCATCAGTAGTTTCCAAAAGGAAGAGATACGACTTTCTTTCAGATTTTGTTCCAGAGAAGTTAAAATTCGAAGACGCCTTAAAGGAAAGAAGCATGGCAGAATCAGGAAAGGACTAA

Protein sequence

MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAYKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFSFVVAASVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD

Homology

[Close]

BLAST of MELO3C025765.1 vs. ExPASy Swiss-Prot
Match: A6QQ14 (DNA polymerase epsilon subunit 4 OS=Bos taurus OX=9913 GN=POLE4 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.2e-04
Identity = 20/65 (30.77%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 122 KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAY 181
           ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  
Sbjct: 36  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 95

Query: 182 KHLCN 187
           + L N
Sbjct: 96  RDLDN 100

[Close]

BLAST of MELO3C025765.1 vs. ExPASy Swiss-Prot
Match: Q9NR33 (DNA polymerase epsilon subunit 4 OS=Homo sapiens OX=9606 GN=POLE4 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 5.2e-04
Identity = 20/65 (30.77%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 122 KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAY 181
           ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  
Sbjct: 37  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 96

Query: 182 KHLCN 187
           + L N
Sbjct: 97  RDLDN 101

[Close]

BLAST of MELO3C025765.1 vs. ExPASy Swiss-Prot
Match: Q9CQ36 (DNA polymerase epsilon subunit 4 OS=Mus musculus OX=10090 GN=Pole4 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.2e-04
Identity = 20/65 (30.77%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 122 KIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLAY 181
           ++ + P+ R+K +++ +       QEA+F++ +A+E+F+    KDAY C  Q ++K+L  
Sbjct: 38  RLSRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQR 97

Query: 182 KHLCN 187
           + L N
Sbjct: 98  RDLDN 102

[Close]

BLAST of MELO3C025765.1 vs. NCBI nr
Match: KAA0035335.1 (DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA polymerase epsilon subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 391.0 bits (1003), Expect = 8.6e-105
Identity = 221/251 (88.05%), Postives = 221/251 (88.05%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLCN------------------------------ERKKNSLISVRPRVLKKPEEGHIG 222
           YKHLCN                              ERKKNSLISVRPRVLKKPEEGHIG
Sbjct: 181 YKHLCNVSVLYFDAPVYFPLLLYAPCSFASLAWTHTERKKNSLISVRPRVLKKPEEGHIG 240

[Close]

BLAST of MELO3C025765.1 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 378.6 bits (971), Expect = 4.4e-101
Identity = 221/272 (81.25%), Postives = 222/272 (81.62%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFSFVVAASVVSK 240
           YKHL                                                  +SVVSK
Sbjct: 181 YKHL--------------------------------------------------SSVVSK 222

Query: 241 RKRYDFLSDFVPEKLKFEDALKERSMAESGKD 273
           RKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 241 RKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of MELO3C025765.1 vs. NCBI nr
Match: XP_004149539.2 (chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 337.0 bits (863), Expect = 1.5e-88
Identity = 206/274 (75.18%), Postives = 209/274 (76.28%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120
           DN  LAVS PG SASED DAADEDKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFSFVVAASVV 240
           LAYKHL                                                  +SVV
Sbjct: 181 LAYKHL--------------------------------------------------SSVV 222

Query: 241 SKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 273
           SKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 241 SKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of MELO3C025765.1 vs. NCBI nr
Match: XP_038902902.1 (DNA polymerase epsilon subunit C [Benincasa hispida])

HSP 1 Score: 312.8 bits (800), Expect = 3.0e-81
Identity = 189/272 (69.49%), Postives = 201/272 (73.90%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAK KEAGTSKP PK KTHNNAR SDK+ S KKKKKKK  IST NGSVKDN
Sbjct: 44  MASSKKSSTEAKSKEAGTSKPTPKTKTHNNARKSDKDDSNKKKKKKK-KISTINGSVKDN 103

Query: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           E LA SPPG +++ ++  ADED+AETTS K  TSKSKKV+RNH K+E+NGYA EEEEEAE
Sbjct: 104 EALATSPPGSASASEEVDADEDRAETTSGKPNTSKSKKVQRNHVKKEENGYAAEEEEEAE 163

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 164 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 223

Query: 181 YKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFSFVVAASVVSK 240
           YKHL                                                  +SVV K
Sbjct: 224 YKHL--------------------------------------------------SSVVCK 264

Query: 241 RKRYDFLSDFVPEKLKFEDALKERSMAESGKD 273
           RKRYDFLSDFVPEKLKFEDALKER+MAESGKD
Sbjct: 284 RKRYDFLSDFVPEKLKFEDALKERNMAESGKD 264

[Close]

BLAST of MELO3C025765.1 vs. NCBI nr
Match: XP_031743864.1 (DNA polymerase epsilon subunit 4 isoform X2 [Cucumis sativus] >KAE8647059.1 hypothetical protein Csa_023035 [Cucumis sativus])

HSP 1 Score: 290.4 bits (742), Expect = 1.6e-74
Identity = 169/186 (90.86%), Postives = 171/186 (91.94%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120
           DN  LAVS PG SASED DAADEDKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHL 185
           LAYKHL
Sbjct: 181 LAYKHL 184

[Close]

BLAST of MELO3C025765.1 vs. ExPASy TrEMBL
Match: A0A5A7T1L3 (DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00250 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 4.2e-105
Identity = 221/251 (88.05%), Postives = 221/251 (88.05%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLCN------------------------------ERKKNSLISVRPRVLKKPEEGHIG 222
           YKHLCN                              ERKKNSLISVRPRVLKKPEEGHIG
Sbjct: 181 YKHLCNVSVLYFDAPVYFPLLLYAPCSFASLAWTHTERKKNSLISVRPRVLKKPEEGHIG 240

[Close]

BLAST of MELO3C025765.1 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.1e-101
Identity = 221/272 (81.25%), Postives = 222/272 (81.62%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60
           MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKKISISTNNGSVKDN 60

Query: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120
           EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE
Sbjct: 61  EVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEEAE 120

Query: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180
           EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA
Sbjct: 121 EKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKSLA 180

Query: 181 YKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFSFVVAASVVSK 240
           YKHL                                                  +SVVSK
Sbjct: 181 YKHL--------------------------------------------------SSVVSK 222

Query: 241 RKRYDFLSDFVPEKLKFEDALKERSMAESGKD 273
           RKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 241 RKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of MELO3C025765.1 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 7.1e-89
Identity = 206/274 (75.18%), Postives = 209/274 (76.28%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNARNSDKEISKKKKKKKK--ISISTNNGSVK 60
           MASSKKSSTEAK KE GTSKP+PKAKTHNNARNSDK+ISKKKKKKKK  ISISTNNGSVK
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPSPKAKTHNNARNSDKDISKKKKKKKKISISISTNNGSVK 60

Query: 61  DNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEEEE 120
           DN  LAVS PG SASED DAADEDKAETTSRK  TSKSKKVKRNHAKEEDN YA   EEE
Sbjct: 61  DNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA--AEEE 120

Query: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180
           AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS
Sbjct: 121 AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRKKS 180

Query: 181 LAYKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFSFVVAASVV 240
           LAYKHL                                                  +SVV
Sbjct: 181 LAYKHL--------------------------------------------------SSVV 222

Query: 241 SKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 273
           SKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 241 SKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 222

[Close]

BLAST of MELO3C025765.1 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 6.7e-71
Identity = 179/286 (62.59%), Postives = 192/286 (67.13%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTH-------NNARNSDKEISKKKKKKKKISISTN 60
           MASSKKSS+EAK KEAGTSKPAPK KTH       NNAR  DK  SKKKK     +  T+
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKKKKVSSNNNKHTS 60

Query: 61  NGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAE 120
           NGSVK+NEVL +S PG         A+ED+ ETTS+   TSKSKKVKRNH K+E+NGYAE
Sbjct: 61  NGSVKENEVLPISAPGD--------AEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAE 120

Query: 121 EE-------EEEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKD 180
           EE       EEEAEEKIYKFPM+RIKKIMRDENSDLRINQEALFLVNKA+EMFLVQFCKD
Sbjct: 121 EEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKD 180

Query: 181 AYACCAQDRKKSLAYKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPA 240
           AYACCAQDRKKSLAYKHL                                          
Sbjct: 181 AYACCAQDRKKSLAYKHL------------------------------------------ 228

Query: 241 LRFSFVVAASVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 273
                   +SVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGKD
Sbjct: 241 --------SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKD 228

[Close]

BLAST of MELO3C025765.1 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.8e-69
Identity = 176/281 (62.63%), Postives = 191/281 (67.97%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNARNSDKEISKKKKKKKKISIS--T 60
           MASSKKSSTEAK KEAGTSK A       K KT +NA  SDK++SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYA 120
           NNGS ++N+V  +S P  ++ EDD  ADED+ ETTSRK  +SKSKKVKRNH K+E+NGY 
Sbjct: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120

Query: 121 EEEEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180
           EEEEEE   EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFS 240
           CAQDRKKSLAYKHL                                              
Sbjct: 181 CAQDRKKSLAYKHL---------------------------------------------- 229

Query: 241 FVVAASVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 272
               +SVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 241 ----SSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 229

[Close]

BLAST of MELO3C025765.1 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 72.0 bits (175), Expect = 8.2e-13
Identity = 83/276 (30.07%), Postives = 131/276 (47.46%), Query Frame = 0


Query: 1   MASSKKSSTEAKGKEAGTSKPAPKAKTHNNAR----NSDKEISKKKKKKKKISISTNNGS 60
           M SSKK   +    +   +K + ++K  + +R    ++   I KKK +  +IS S+++ S
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDS 60

Query: 61  VKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYAEEEE 120
           V++             +   D A +     + R +  S     K +  +EED+G AE+ +
Sbjct: 61  VEE-------------AIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDDGGAEDAK 120

Query: 121 EEAEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYACCAQDRK 180
                   KFPM+RI++IMR +NS  +I Q+A+FLVNKA+EMF+ +F ++AY    +D+K
Sbjct: 121 -------IKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKK 180

Query: 181 KSLAYKHLCNERKKNSLISVRPRVLKKPEEGHIGKGRKNSYINEGRWDPALRFSFVVAAS 240
           K + YKHL                                                  +S
Sbjct: 181 KFIHYKHL--------------------------------------------------SS 206

Query: 241 VVSKRKRYDFLSDFVPEKLKFEDALK--ERSMAESG 271
           VVS  +RY+FL+D VPEKLK E AL+  ER M ++G
Sbjct: 241 VVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

The following BLAST results are available for this feature:

BLAST of MELO3C025765.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6QQ14	5.2e-04	30.77	DNA polymerase epsilon subunit 4 OS=Bos taurus OX=9913 GN=POLE4 PE=3 SV=1	[more]
Q9NR33	5.2e-04	30.77	DNA polymerase epsilon subunit 4 OS=Homo sapiens OX=9606 GN=POLE4 PE=1 SV=2	[more]
Q9CQ36	5.2e-04	30.77	DNA polymerase epsilon subunit 4 OS=Mus musculus OX=10090 GN=Pole4 PE=1 SV=1	[more]

BLAST of MELO3C025765.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035335.1	8.6e-105	88.05	DNA polymerase epsilon subunit C [Cucumis melo var. makuwa] >TYK14302.1 DNA poly...	[more]
XP_008463933.1	4.4e-101	81.25	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_004149539.2	1.5e-88	75.18	chromatin accessibility complex protein 1 isoform X1 [Cucumis sativus]	[more]
XP_038902902.1	3.0e-81	69.49	DNA polymerase epsilon subunit C [Benincasa hispida]	[more]
XP_031743864.1	1.6e-74	90.86	DNA polymerase epsilon subunit 4 isoform X2 [Cucumis sativus] >KAE8647059.1 hypo...	[more]

BLAST of MELO3C025765.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1L3	4.2e-105	88.05	DNA polymerase epsilon subunit C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CKU7	2.1e-101	81.25	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A0A0KCQ2	7.1e-89	75.18	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]
A0A6J1JF10	6.7e-71	62.59	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CGZ0	2.8e-69	62.63	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]

BLAST of MELO3C025765.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	8.2e-13	30.07	nuclear factor Y, subunit C10	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 102..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..119
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 235..269 coord: 17..191
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 235..269 coord: 17..191
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 110..253 e-value: 3.6E-19 score: 71.0
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 85..184
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 125..185 e-value: 3.6E-15 score: 56.0

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025765	MELO3C025765	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025765.1:exon:334383	MELO3C025765.1:exon:334383	exon
MELO3C025765.1:exon:334382	MELO3C025765.1:exon:334382	exon
MELO3C025765.1:exon:334381	MELO3C025765.1:exon:334381	exon
MELO3C025765.1:exon:334380	MELO3C025765.1:exon:334380	exon
MELO3C025765.1:exon:334379	MELO3C025765.1:exon:334379	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025765.1:three_prime_utr	MELO3C025765.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025765.1:cds	MELO3C025765.1:cds	CDS
MELO3C025765.1:cds	MELO3C025765.1:cds_2	CDS
MELO3C025765.1:cds	MELO3C025765.1:cds_3	CDS
MELO3C025765.1:cds	MELO3C025765.1:cds_4	CDS
MELO3C025765.1:cds	MELO3C025765.1:cds_5	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025765.1:five_prime_utr	MELO3C025765.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025765.1	MELO3C025765.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046982	protein heterodimerization activity