MELO3C025382.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C025382.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr06: 29551466 .. 29551702 (-)
Sequence length	237
RNA-Seq Expression	MELO3C025382.1
Synteny	MELO3C025382.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGTTCAGACCCAGTTACCGGTACAGCTAGTGAGAATGATGCAGAGAAGCTGTCAAGATGTACCATCCAAGGGACCACTACTATTGACTCTCGGATCACGACCCTAAAAAAATGTCCCATACCATATCAAAAATACGGAGCCTCATTCAATGGATTTAGTTGGAACGATGAGGTGAAGTGCATAATCGATAAGAAGGAATTGTTCGACATTTGGGTGAAGGTAGACAATTAA

mRNA sequence

ATGGCACGTTCAGACCCAGTTACCGGTACAGCTAGTGAGAATGATGCAGAGAAGCTGTCAAGATGTACCATCCAAGGGACCACTACTATTGACTCTCGGATCACGACCCTAAAAAAATGTCCCATACCATATCAAAAATACGGAGCCTCATTCAATGGATTTAGTTGGAACGATGAGGTGAAGTGCATAATCGATAAGAAGGAATTGTTCGACATTTGGGTGAAGGTAGACAATTAA

Coding sequence (CDS)

ATGGCACGTTCAGACCCAGTTACCGGTACAGCTAGTGAGAATGATGCAGAGAAGCTGTCAAGATGTACCATCCAAGGGACCACTACTATTGACTCTCGGATCACGACCCTAAAAAAATGTCCCATACCATATCAAAAATACGGAGCCTCATTCAATGGATTTAGTTGGAACGATGAGGTGAAGTGCATAATCGATAAGAAGGAATTGTTCGACATTTGGGTGAAGGTAGACAATTAA

Protein sequence

MARSDPVTGTASENDAEKLSRCTIQGTTTIDSRITTLKKCPIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWVKVDN

Homology

[Close]

BLAST of MELO3C025382.1 vs. NCBI nr
Match: KAA0068155.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 9.6e-09
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKL RC ++ TT ID RI TLK+      +  G S +GF WNDE KCI+ KKELFD WV
Sbjct: 53  AEKLPRCQVRATTVIDCRIKTLKQTFQAITEMRGPSCSGFGWNDEEKCIVAKKELFDNWV 112

Query: 76  KVD 78
           + D
Sbjct: 113 RGD 115

[Close]

BLAST of MELO3C025382.1 vs. NCBI nr
Match: KAA0049675.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12198.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.8e-08
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKL  C I+ TT ID RI TLK+   +  +  G +++GF WNDE KCII +KELFD WV
Sbjct: 53  AEKLPGCQIRATTVIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWV 112

[Close]

BLAST of MELO3C025382.1 vs. NCBI nr
Match: KAA0049911.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKLS C ++ TT ID RI TLK+   +  +  G + +GF WNDE KCII +KELFD WV
Sbjct: 53  AEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWV 112

[Close]

BLAST of MELO3C025382.1 vs. NCBI nr
Match: KAA0046637.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKL  C ++ TT ID RI TLK+      +  G + +GF WNDE KCI+ KKELFD WV
Sbjct: 53  AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAKKELFDNWV 112

Query: 76  KVDN 79
           +V N
Sbjct: 113 RVWN 116

[Close]

BLAST of MELO3C025382.1 vs. NCBI nr
Match: TYK07652.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 4.8e-08
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKLS C ++ TT ID RI TLK+   +  +  G + +GF WNDE KCII +KELFD WV
Sbjct: 53  AEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWV 112

[Close]

BLAST of MELO3C025382.1 vs. ExPASy TrEMBL
Match: A0A5A7VR00 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001230 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.7e-09
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKL RC ++ TT ID RI TLK+      +  G S +GF WNDE KCI+ KKELFD WV
Sbjct: 53  AEKLPRCQVRATTVIDCRIKTLKQTFQAITEMRGPSCSGFGWNDEEKCIVAKKELFDNWV 112

Query: 76  KVD 78
           + D
Sbjct: 113 RGD 115

[Close]

BLAST of MELO3C025382.1 vs. ExPASy TrEMBL
Match: A0A5D3CM34 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001480 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKL  C I+ TT ID RI TLK+   +  +  G +++GF WNDE KCII +KELFD WV
Sbjct: 53  AEKLPGCQIRATTVIDCRIKTLKRIFQVIVEMRGPAYSGFGWNDEEKCIIAEKELFDNWV 112

[Close]

BLAST of MELO3C025382.1 vs. ExPASy TrEMBL
Match: A0A5A7TXH6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23362G00010 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKL  C ++ TT ID RI TLK+      +  G + +GF WNDE KCI+ KKELFD WV
Sbjct: 53  AEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAKKELFDNWV 112

Query: 76  KVDN 79
           +V N
Sbjct: 113 RVWN 116

[Close]

BLAST of MELO3C025382.1 vs. ExPASy TrEMBL
Match: A0A5D3C8P0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00590 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKLS C ++ TT ID RI TLK+   +  +  G + +GF WNDE KCII +KELFD WV
Sbjct: 53  AEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWV 112

[Close]

BLAST of MELO3C025382.1 vs. ExPASy TrEMBL
Match: A0A5A7U8I3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00680 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 16  AEKLSRCTIQGTTTIDSRITTLKKC-PIPYQKYGASFNGFSWNDEVKCIIDKKELFDIWV 75
           AEKLS C ++ TT ID RI TLK+   +  +  G + +GF WNDE KCII +KELFD WV
Sbjct: 53  AEKLSGCQVRATTVIDCRIKTLKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWV 112

The following BLAST results are available for this feature:

BLAST of MELO3C025382.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068155.1	9.6e-09	55.56	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049675.1	2.8e-08	54.10	retrotransposon protein [Cucumis melo var. makuwa] >TYK12198.1 retrotransposon p...	[more]
KAA0049911.1	4.8e-08	54.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046637.1	4.8e-08	53.13	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07652.1	4.8e-08	54.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C025382.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C025382.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VR00	4.7e-09	55.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CM34	1.4e-08	54.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXH6	2.3e-08	53.13	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C8P0	2.3e-08	54.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8I3	2.3e-08	54.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C025382.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025382	MELO3C025382	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025382.1:exon:188731	MELO3C025382.1:exon:188731	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025382.1:cds	MELO3C025382.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025382.1	MELO3C025382.1-protein	polypeptide