MELO3C024515.jh1.t2 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C024515.jh1.t2
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Splicing factor U2af small subunit B-like
Location	chr08: 8526101 .. 8529119 (-)
Sequence length	2274
RNA-Seq Expression	MELO3C024515.jh1.t2
Synteny	MELO3C024515.jh1.t2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAGCACAAGAAAATGGCGGAACACTTGGCTTCAATTTTCGGAACGGAGAAGGATAGGGTTAACTGCCCTTTCTACTTCAAGATTGGCGCCTGTAGACATGGTGATCGGTGCTCTAGGCTTCACACTAAGCCCAGCATCAGCCCTACACTCCTCCTCTCTAATATGTATCAGAGACCTGATATGATCACCCCCGGCGTCGACCCTCAAGGCCAAGCTCTTGACCCTCGCAAGGTTCAGGATCACTTTGAGGTATGAACTCTCTGCTGTTTCTCTTTCTTTTCGTTGATTGGCATTTGTTTCATGGATTTTATAACCTTGAATCTTTTCAACGCTGAAACGGTTTTCTCCCTTTCCTTCTTTTTTGCAATCTGGAATGTAGGACTTTTATGAAGATCTATTTGAGGAGTTGAGCAAATATGGAGATCTTGAAAGTTTAAATATTTGTGATAATCTGGCTGACCATATGGTATGTTTACTCTCGCGTTTTAAATTGAAGGGTATATTTGGATCTGTGTTACTCTGACTAGTTTGGCTTTAAATCCATGGACAGGTGGGCAATGTCTATGTTCAGTTTAGAGAAGAAGAACAAGCTGCAAATGCGCTTCACAATCTTAATGGACGCTTTTATGCAGGTTTGATGTCCGATACTTTTTTTTGTTTATTTTCTTTATCGCTGAGGGTTTTCTTTTTACAATGAAATGAATCTTGTGGGTGCCATAGCAATGAAATGAAGCTTCGTGTACATCAGTGATTGGTTTGTTCAATGCTGATAATGTAGTTGTACTATTACGATTCTGATGTGCAATTTTTAAATCAATAATGACGTTGCCAGTGTTTTTTTGGAGGTTTAATGGAGCTTTCCCAAAGGGAGTTAACTGTAAACTTGGATTAACTGTATCTTTCAAAATTTATATGTTCTGTTCTATTATGATATCAACGGATATACTCTCGATCAATGGTTGCTAATAGAAAAAATATGGTTGCTTTACACTCTTCGTTATTTGTTTGTGTGTAAGATGGCCCAGGTGTATGTAGTTACTAGGTCTTATTTTTCAAAATTTTGATAGGTCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGCAGGCAGTATGAGGAAAATGTATGTAACCGTGGTGGCTATTGTAACTTTATGCATCTGAAGAAGATAAGCAGGTACATTATCAGCATGATTTCTTTGTTTTTCCTGAAAATGTATTAGTTAGCTAATGATCCACCTGCTTATCGTTGTGATTTTCCATGTGATTTTAGAGAGTTGAGAAGGCGCTTATTTGGGAGGAGCAGGCGCAGGCGTAGCCGAAGCCGAAGCCGAAGTCAAAGCCCCCACAAACATCATGGATATGAAGAACGTTCCCATGGTGGTGGTCGTGGACGTGGGTCTAGTAGAAGAGATGGAGAAAAGGACCCTCGGTATCTTGATAGAAGCAGGAGGCCTAGAAGCCGTAGCCCTAGGCATAGAGGGGGACGGAGTAGAAGCCCTGGAGGGAGGAGAAATAGAAGTCCAGTTAGGGAAAGTAGTGCTGAAAGAAGGGCTAAGATTGAACAGTGGAACAGGGACAGGGAAAAGGCAGATAATGGTAGTAATCATCAGGATGTCAAGGATGTTGGTGGAAGCAATGACCTAGTACAAAATGAAGATGAATTTGATCCTTCTAAGCAGTTCTAGAGAAAATGGTGGATGCGGTGCTTGCCTGAGAAAAATTTTCTGGTTTGCTTCTGTCCTTTTATTTGTTCAATGTAGGGGCCATAGTAGAATGCTTTCCCCTTTATTAATAAAACAGCCCATTCTCTAAAAGAAGTAGCTCACTGCCCATTTCCACTGTGCAGGTGGAGGACAGGTTCCCTGTCACGTGTTATTGAATGTGAATTCCAGTTTTGTTAACCTCATCCCTTCACCCTAAAAATGAAAATAAATAGGATAGAAATAATCTTTAGTGAGTAACCCTCTTGGAAAACTCTTCAATATTCCATGCCATTTTGAATTGGTCACAGCCATCCTCATTCTTTTTTCTTTGGTCGTTCATCTTAGTTGGAATGTGTTTCCCCATGTTTATGGGAATTACAGGATGAAATAAAACTTTATATCACCTAAAAGTAGGACTAGTGTATGTAGTGCTTAACCTGCAGAAGTCTTGAGGAAAGGTTTCTTACAAACCATTTTTAGTTTTTCTTTACTTTTTTTTTACTTAAACTTTCTTTTCATCACTTTTACATGAAAAGCAAGACCAAGATTTTAGGACCGGCCTTCATGTTTGCTGATGTTTACGACTTTCTTAATTATACAGGTTAATCTACGGAAAAAAATGTTTAATACGTTTGTCGTTTTATCATAATATTTTCTATGCCTCAAAATTTACTGGATATTTTCTCCAATTGGGTTTCTTGAGTTAACATTTTTAAACTATTATTTTTCTAAAAACTTCTTGTAGACATCCTTACCTAAAGCAGATGTAGAGCTTGTTGTCATCCTAATAGAATGTTATTCCCTTTTCATGCTCTCATCTTTACAGGAAGAAATAGAATTAGTTGCAGTTGTGGTCATGGCTTTTTGTTTTTTATATGCAGATTATGGATATTGAAATTTCCTTTTATGTTTCTTACATATTCTGCGAGTTTTGCAGGTTCAGGTTTTCCTGCTTGCCCAAATACTTCTTAGGCAGCTTACCATCGTATTCATAATACAGGTTTGGCTGTTATCTGGAGGATTTGCAGGATTTGATGTCATGTTTCGTTGGAAACATGAAGGAAGCTTCTCTCCACAACTTCTGCAATGCTGAAAAATGTATGTCCTCGTTAGGTTTGATTTTTCCCCATCTCGTAATGAAACTAAGTTAAAGGATTTCTGAGACATAAGTAGATTTAATCTCGTTTCCTTGTTTGGAATTGTGTTGTATTTCCAAGATTTTATTGACGTTTTCAGAGAGATACTATTGAGAGCTGCCTACGATAATAGTTGAAGTTTCCTTTTGTTGCCTTGA

mRNA sequence

TCGAGCACAAGAAAATGGCGGAACACTTGGCTTCAATTTTCGGAACGGAGAAGGATAGGGTTAACTGCCCTTTCTACTTCAAGATTGGCGCCTGTAGACATGGTGATCGGTGCTCTAGGCTTCACACTAAGCCCAGCATCAGCCCTACACTCCTCCTCTCTAATATGTATCAGAGACCTGATATGATCACCCCCGGCGTCGACCCTCAAGGCCAAGCTCTTGACCCTCGCAAGGTTCAGGATCACTTTGAGGACTTTTATGAAGATCTATTTGAGGAGTTGAGCAAATATGGAGATCTTGAAAGTTTAAATATTTGTGATAATCTGGCTGACCATATGGTGGGCAATGTCTATGTTCAGTTTAGAGAAGAAGAACAAGCTGCAAATGCGCTTCACAATCTTAATGGACGCTTTTATGCAGGTCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGCAGGCAGTATGAGGAAAATGTATGTAACCGTGGTGGCTATTGTAACTTTATGCATCTGAAGAAGATAAGCAGAGAGTTGAGAAGGCGCTTATTTGGGAGGAGCAGGCGCAGGCGTAGCCGAAGCCGAAGCCGAAGTCAAAGCCCCCACAAACATCATGGATATGAAGAACGTTCCCATGGTGGTGGTCGTGGACGTGGGTCTAGTAGAAGAGATGGAGAAAAGGACCCTCGGTATCTTGATAGAAGCAGGAGGCCTAGAAGCCGTAGCCCTAGGCATAGAGGGGGACGGAGTAGAAGCCCTGGAGGGAGGAGAAATAGAAGTCCAGTTAGGGAAAGTAGTGCTGAAAGAAGGGCTAAGATTGAACAGTGGAACAGGGACAGGGAAAAGGCAGATAATGGTAGTAATCATCAGGATGTCAAGGATGTTGGTGGAAGCAATGACCTAGTACAAAATGAAGATGAATTTGATCCTTCTAAGCAGTTCTAGAGAAAATGGTGGATGCGGTGCTTGCCTGAGAAAAATTTTCTGGTTTGCTTCTGTCCTTTTATTTGTTCAATGTAGGGGCCATAGTAGAATGCTTTCCCCTTTATTAATAAAACAGCCCATTCTCTAAAAGAAGTAGCTCACTGCCCATTTCCACTGTGCAGGTGGAGGACAGGTTCCCTGTCACGTGTTATTGAATGTGAATTCCAGTTTTGTTAACCTCATCCCTTCACCCTAAAAATGAAAATAAATAGGATAGAAATAATCTTTAGTGAGTAACCCTCTTGGAAAACTCTTCAATATTCCATGCCATTTTGAATTGGTCACAGCCATCCTCATTCTTTTTTCTTTGGTCGTTCATCTTAGTTGGAATGTGTTTCCCCATGTTTATGGGAATTACAGGATGAAATAAAACTTTATATCACCTAAAAGTAGGACTAGTGTATGTAGTGCTTAACCTGCAGAAGTCTTGAGGAAAGGTTTCTTACAAACCATTTTTAGTTTTTCTTTACTTTTTTTTTACTTAAACTTTCTTTTCATCACTTTTACATGAAAAGCAAGACCAAGATTTTAGGACCGGCCTTCATGTTTGCTGATGTTTACGACTTTCTTAATTATACAGGTTAATCTACGGAAAAAAATGTTTAATACGTTTGTCGTTTTATCATAATATTTTCTATGCCTCAAAATTTACTGGATATTTTCTCCAATTGGGTTTCTTGAGTTAACATTTTTAAACTATTATTTTTCTAAAAACTTCTTGTAGACATCCTTACCTAAAGCAGATGTAGAGCTTGTTGTCATCCTAATAGAATGTTATTCCCTTTTCATGCTCTCATCTTTACAGGAAGAAATAGAATTAGTTGCAGTTGTGGTCATGGCTTTTTGTTTTTTATATGCAGATTATGGATATTGAAATTTCCTTTTATGTTTCTTACATATTCTGCGAGTTTTGCAGGTTCAGGTTTTCCTGCTTGCCCAAATACTTCTTAGGCAGCTTACCATCGTATTCATAATACAGGTTTGGCTGTTATCTGGAGGATTTGCAGGATTTGATGTCATGTTTCGTTGGAAACATGAAGGAAGCTTCTCTCCACAACTTCTGCAATGCTGAAAAATGTATGTCCTCGTTAGGTTTGATTTTTCCCCATCTCGTAATGAAACTAAGTTAAAGGATTTCTGAGACATAAGTAGATTTAATCTCGTTTCCTTGTTTGGAATTGTGTTGTATTTCCAAGATTTTATTGACGTTTTCAGAGAGATACTATTGAGAGCTGCCTACGATAATAGTTGAAGTTTCCTTTTGTTGCCTTGA

Coding sequence (CDS)

ATGGCGGAACACTTGGCTTCAATTTTCGGAACGGAGAAGGATAGGGTTAACTGCCCTTTCTACTTCAAGATTGGCGCCTGTAGACATGGTGATCGGTGCTCTAGGCTTCACACTAAGCCCAGCATCAGCCCTACACTCCTCCTCTCTAATATGTATCAGAGACCTGATATGATCACCCCCGGCGTCGACCCTCAAGGCCAAGCTCTTGACCCTCGCAAGGTTCAGGATCACTTTGAGGACTTTTATGAAGATCTATTTGAGGAGTTGAGCAAATATGGAGATCTTGAAAGTTTAAATATTTGTGATAATCTGGCTGACCATATGGTGGGCAATGTCTATGTTCAGTTTAGAGAAGAAGAACAAGCTGCAAATGCGCTTCACAATCTTAATGGACGCTTTTATGCAGGTCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGCAGGCAGTATGAGGAAAATGTATGTAACCGTGGTGGCTATTGTAACTTTATGCATCTGAAGAAGATAAGCAGAGAGTTGAGAAGGCGCTTATTTGGGAGGAGCAGGCGCAGGCGTAGCCGAAGCCGAAGCCGAAGTCAAAGCCCCCACAAACATCATGGATATGAAGAACGTTCCCATGGTGGTGGTCGTGGACGTGGGTCTAGTAGAAGAGATGGAGAAAAGGACCCTCGGTATCTTGATAGAAGCAGGAGGCCTAGAAGCCGTAGCCCTAGGCATAGAGGGGGACGGAGTAGAAGCCCTGGAGGGAGGAGAAATAGAAGTCCAGTTAGGGAAAGTAGTGCTGAAAGAAGGGCTAAGATTGAACAGTGGAACAGGGACAGGGAAAAGGCAGATAATGGTAGTAATCATCAGGATGTCAAGGATGTTGGTGGAAGCAATGACCTAGTACAAAATGAAGATGAATTTGATCCTTCTAAGCAGTTCTAG

Protein sequence

MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEEQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRELRRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSNDLVQNEDEFDPSKQF

Homology

[Close]

BLAST of MELO3C024515.jh1.t2 vs. NCBI nr
Match: XP_008462532.1 (PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_008462533.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo])

HSP 1 Score: 622 bits (1603), Expect = 2.02e-224
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN
Sbjct: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300

Query: 301 DLVQNEDEFDPSKQF 315
           DLVQNEDEFDPSKQF
Sbjct: 301 DLVQNEDEFDPSKQF 315

[Close]

BLAST of MELO3C024515.jh1.t2 vs. NCBI nr
Match: KAA0025291.1 (splicing factor U2af small subunit B-like [Cucumis melo var. makuwa])

HSP 1 Score: 622 bits (1603), Expect = 5.12e-224
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 26  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 85

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 86  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 145

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 146 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 205

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR
Sbjct: 206 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 265

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN
Sbjct: 266 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 325

Query: 301 DLVQNEDEFDPSKQF 315
           DLVQNEDEFDPSKQF
Sbjct: 326 DLVQNEDEFDPSKQF 340

[Close]

BLAST of MELO3C024515.jh1.t2 vs. NCBI nr
Match: XP_004143302.1 (splicing factor U2af small subunit B [Cucumis sativus] >XP_011657685.1 splicing factor U2af small subunit B [Cucumis sativus] >KGN48233.1 hypothetical protein Csa_003140 [Cucumis sativus])

HSP 1 Score: 610 bits (1573), Expect = 8.14e-220
Identity = 312/317 (98.42%), Postives = 312/317 (98.42%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGG--RGRGSSRRDGEKDPRYLDRSRR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGG  RGRG SRRDGEKDPRY DRSRR
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEKDPRYHDRSRR 240

Query: 241 PRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGG 300
           PRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREK DNGSNHQDVKDVGG
Sbjct: 241 PRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKEDNGSNHQDVKDVGG 300

Query: 301 SNDLVQNEDEFDPSKQF 315
           SNDLVQNEDEFDPSKQF
Sbjct: 301 SNDLVQNEDEFDPSKQF 317

[Close]

BLAST of MELO3C024515.jh1.t2 vs. NCBI nr
Match: TYK07378.1 (enolase [Cucumis melo var. makuwa])

HSP 1 Score: 622 bits (1603), Expect = 2.06e-217
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 460 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 519

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 520 GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 579

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 580 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 639

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR
Sbjct: 640 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 699

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN
Sbjct: 700 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 759

Query: 301 DLVQNEDEFDPSKQF 315
           DLVQNEDEFDPSKQF
Sbjct: 760 DLVQNEDEFDPSKQF 774

[Close]

BLAST of MELO3C024515.jh1.t2 vs. NCBI nr
Match: XP_038882602.1 (splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038882603.1 splicing factor U2af small subunit B-like [Benincasa hispida])

HSP 1 Score: 604 bits (1557), Expect = 2.08e-217
Identity = 304/315 (96.51%), Postives = 311/315 (98.73%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRSRS+S+SPHKHHGYE+R HGGGRGRG SRR+G+KDPRY +RSRRPR
Sbjct: 181 RRRLFGRSRRRRSRSRSQSRSPHKHHGYEDRPHGGGRGRGPSRREGDKDPRYHERSRRPR 240

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN
Sbjct: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300

Query: 301 DLVQNEDEFDPSKQF 315
           DL QNEDEFDPSKQ+
Sbjct: 301 DLAQNEDEFDPSKQY 315

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9FMY5 (Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 9.4e-106
Identity = 207/289 (71.63%), Postives = 233/289 (80.62%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQ LDP K+QDHFEDFYED+FEEL+K+G++ESLN+CDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
            AA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRRLFGRSR---RRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSR-RDGEKDPRYLDRS 240
           RR+LFGR R   RR SRSRSRS SP +     +R H   R RG  R RD   + +   RS
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRR-----KREHSRERERGDVRDRDRHGNGK---RS 240

Query: 241 RRPRSRSPRHRGGRSRSPGGRRNRSP--VRESSAERRAKIEQWNRDREK 284
                R  R  GGR R    +R+RSP  VRE S ERRA+IEQWNR+R++
Sbjct: 241 SDRSERHDRDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9S709 (Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 4.6e-105
Identity = 210/305 (68.85%), Postives = 235/305 (77.05%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVD QGQ LDPRK+Q+HFEDF+EDLFEEL K+G++ESLNICDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRRLFGRSRR-----RRSRSRSRSQSP------------HKHHGYEERSHGGGRGRGSSR 240
           RR+LFGR RR      RSRSRSRS SP            H+   + +R     R  GS +
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYR-HGSGK 240

Query: 241 RDGEKDPRY-LDRSRRPRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDRE 288
           R  E+  R   D SR  R  SP+ RGG   SPGG       RE S ERRA+IEQWNR+RE
Sbjct: 241 RSSERSERQERDGSRGRRQASPK-RGG---SPGGG------REGSEERRARIEQWNRERE 294

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9ZQW8 (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 2.2e-102
Identity = 201/292 (68.84%), Postives = 224/292 (76.71%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           G+D QG  +DP K+Q  FEDFYED+FEELSKYG++ESL++CDN ADHM+GNVYVQFREE+
Sbjct: 61  GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAA AL  L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CNRGGYCNFMH+K+I R+L
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180

Query: 181 RRRLFG---RSRRRRSRSRSRSQSP-HKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRS 240
           R+RLFG   RSRR  S  RSRS SP H    Y+ RS    R      R G  D  Y   S
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHD-YYRGGS 240

Query: 241 RRPRSRSPRHRGG----RSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKA 285
           RR    S RHR       SR     R RSPVR+ S ERRA+IEQWNR+RE A
Sbjct: 241 RR---SSERHRSSYDSDGSRRRHRSRTRSPVRDGSEERRAQIEQWNREREAA 288

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q6AUG0 (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 8.2e-102
Identity = 199/303 (65.68%), Postives = 230/303 (75.91%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVD QGQ +DP K+Q+HFEDFYED++EELSK+G++E+LN+CDNLADHM+GNVYVQFREEE
Sbjct: 61  GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QA  A + L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CNRGGYCNFMH+K+I REL
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSH-----------------GGGRGRGSSR 240
           RR+L+G  R RRS  RSRS SP    G  +R                   GGG G G   
Sbjct: 181 RRKLYG-GRSRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDGY 240

Query: 241 RDGEKDPRYLDRSRR-PRSRSPRHRGGRSRSPGG--RRNRSPVRESSAERRAKIEQWNRD 284
           R G+         RR   SR  R+  G  R  G   RR RSPVRESS ERRAKIEQWNR+
Sbjct: 241 RGGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPRRARSPVRESSEERRAKIEQWNRE 300

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy Swiss-Prot
Match: A1A4K8 (Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 7.0e-69
Identity = 132/239 (55.23%), Postives = 170/239 (71.13%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   + 
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEEL-SKYGDLESLNICDNLADHMVGNVYVQFREE 120
             D    A+   ++Q+H+++F+E++F E+  KYG++E +N+CDNL DH+VGNVYV+FR E
Sbjct: 61  SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120

Query: 121 EQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRE 180
           E A  A+ +LN R++ G+PI  + SPVTDFREA CRQYE   C RGG+CNFMHLK ISRE
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180

Query: 181 LRRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRR 239
           LRR L+G   RRR + RSRS+S  +     +R  GGG G G  R    +  R  +RS R
Sbjct: 181 LRRELYG---RRRKKHRSRSRSRERRSRSRDRGRGGGGGGGGGRERDRRRSRDRERSGR 236

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy TrEMBL
Match: A0A1S3CH52 (splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC103500870 PE=4 SV=1)

HSP 1 Score: 622 bits (1603), Expect = 9.77e-225
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN
Sbjct: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300

Query: 301 DLVQNEDEFDPSKQF 315
           DLVQNEDEFDPSKQF
Sbjct: 301 DLVQNEDEFDPSKQF 315

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy TrEMBL
Match: A0A5A7SM18 (Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G001450 PE=4 SV=1)

HSP 1 Score: 622 bits (1603), Expect = 2.48e-224
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 26  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 85

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 86  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 145

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 146 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 205

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR
Sbjct: 206 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 265

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN
Sbjct: 266 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 325

Query: 301 DLVQNEDEFDPSKQF 315
           DLVQNEDEFDPSKQF
Sbjct: 326 DLVQNEDEFDPSKQF 340

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy TrEMBL
Match: A0A0A0KF96 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450380 PE=4 SV=1)

HSP 1 Score: 610 bits (1573), Expect = 3.94e-220
Identity = 312/317 (98.42%), Postives = 312/317 (98.42%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGG--RGRGSSRRDGEKDPRYLDRSRR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGG  RGRG SRRDGEKDPRY DRSRR
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEKDPRYHDRSRR 240

Query: 241 PRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGG 300
           PRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREK DNGSNHQDVKDVGG
Sbjct: 241 PRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKEDNGSNHQDVKDVGG 300

Query: 301 SNDLVQNEDEFDPSKQF 315
           SNDLVQNEDEFDPSKQF
Sbjct: 301 SNDLVQNEDEFDPSKQF 317

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy TrEMBL
Match: A0A5D3C894 (Phosphopyruvate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00980 PE=3 SV=1)

HSP 1 Score: 622 bits (1603), Expect = 9.99e-218
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 460 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 519

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 520 GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 579

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 580 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 639

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR
Sbjct: 640 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 699

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN
Sbjct: 700 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 759

Query: 301 DLVQNEDEFDPSKQF 315
           DLVQNEDEFDPSKQF
Sbjct: 760 DLVQNEDEFDPSKQF 774

[Close]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1EGF6 (splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111433144 PE=4 SV=1)

HSP 1 Score: 583 bits (1503), Expect = 1.65e-209
Identity = 297/315 (94.29%), Postives = 306/315 (97.14%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAANAL NLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL
Sbjct: 121 QAANALQNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSRRDGEKDPRYLDRSRRPR 240
           RRRLFGRSRRRRSRS+S+S+SPH+HHG+++R HGG RGRG SRRDG+KDPRY DRSRRPR
Sbjct: 181 RRRLFGRSRRRRSRSQSQSRSPHRHHGHDDRPHGG-RGRGPSRRDGDKDPRYHDRSRRPR 240

Query: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDREKADNGSNHQDVKDVGGSN 300
           SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDRE ADNGS HQDVKD GGSN
Sbjct: 241 SRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDRETADNGSGHQDVKDDGGSN 300

Query: 301 DLVQNEDEFDPSKQF 315
            LVQNEDEFDPSKQ+
Sbjct: 301 GLVQNEDEFDPSKQY 314

[Close]

BLAST of MELO3C024515.jh1.t2 vs. TAIR 10
Match: AT5G42820.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 384.8 bits (987), Expect = 6.6e-107
Identity = 207/289 (71.63%), Postives = 233/289 (80.62%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQ LDP K+QDHFEDFYED+FEEL+K+G++ESLN+CDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
            AA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRRLFGRSR---RRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSR-RDGEKDPRYLDRS 240
           RR+LFGR R   RR SRSRSRS SP +     +R H   R RG  R RD   + +   RS
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRR-----KREHSRERERGDVRDRDRHGNGK---RS 240

Query: 241 RRPRSRSPRHRGGRSRSPGGRRNRSP--VRESSAERRAKIEQWNRDREK 284
                R  R  GGR R    +R+RSP  VRE S ERRA+IEQWNR+R++
Sbjct: 241 SDRSERHDRDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of MELO3C024515.jh1.t2 vs. TAIR 10
Match: AT5G42820.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 384.8 bits (987), Expect = 6.6e-107
Identity = 207/289 (71.63%), Postives = 233/289 (80.62%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVDPQGQ LDP K+QDHFEDFYED+FEEL+K+G++ESLN+CDNLADHM+GNVYV F+EE+
Sbjct: 61  GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
            AA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K+ISREL
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180

Query: 181 RRRLFGRSR---RRRSRSRSRSQSPHKHHGYEERSHGGGRGRGSSR-RDGEKDPRYLDRS 240
           RR+LFGR R   RR SRSRSRS SP +     +R H   R RG  R RD   + +   RS
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRR-----KREHSRERERGDVRDRDRHGNGK---RS 240

Query: 241 RRPRSRSPRHRGGRSRSPGGRRNRSP--VRESSAERRAKIEQWNRDREK 284
                R  R  GGR R    +R+RSP  VRE S ERRA+IEQWNR+R++
Sbjct: 241 SDRSERHDRDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281

[Close]

BLAST of MELO3C024515.jh1.t2 vs. TAIR 10
Match: AT1G27650.1 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 382.5 bits (981), Expect = 3.3e-106
Identity = 210/305 (68.85%), Postives = 235/305 (77.05%), Query Frame = 0


Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60

Query: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120
           GVD QGQ LDPRK+Q+HFEDF+EDLFEEL K+G++ESLNICDNLADHM+GNVYVQF+EE+
Sbjct: 61  GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120

Query: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180
           QAA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMH+K +SREL
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180

Query: 181 RRRLFGRSRR-----RRSRSRSRSQSP------------HKHHGYEERSHGGGRGRGSSR 240
           RR+LFGR RR      RSRSRSRS SP            H+   + +R     R  GS +
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYR-HGSGK 240

Query: 241 RDGEKDPRY-LDRSRRPRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRAKIEQWNRDRE 288
           R  E+  R   D SR  R  SP+ RGG   SPGG       RE S ERRA+IEQWNR+RE
Sbjct: 241 RSSERSERQERDGSRGRRQASPK-RGG---SPGGG------REGSEERRARIEQWNRERE 294

[Close]

BLAST of MELO3C024515.jh1.t2 vs. TAIR 10
Match: AT1G27650.2 (U2 snRNP auxiliary factor small subunit, putative )

HSP 1 Score: 278.9 bits (712), Expect = 5.1e-75
Identity = 163/255 (63.92%), Postives = 186/255 (72.94%), Query Frame = 0


Query: 51  MYQRPDMITPGVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVG 110
           MYQRPDMITPGVD QGQ LDPRK+Q+HFEDF+EDLFEEL K+G++ESLNICDNLADHM+G
Sbjct: 1   MYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIG 60

Query: 111 NVYVQFREEEQAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNF 170
           NVYVQF+EE+QAA AL  L GRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNF
Sbjct: 61  NVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNF 120

Query: 171 MHLKKISRELRRRLFGRSRR-----RRSRSRSRSQSP------------HKHHGYEERSH 230
           MH+K +SRELRR+LFGR RR      RSRSRSRS SP            H+   + +R  
Sbjct: 121 MHVKLVSRELRRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDR 180

Query: 231 GGGRGRGSSRRDGEKDPRY-LDRSRRPRSRSPRHRGGRSRSPGGRRNRSPVRESSAERRA 288
              R  GS +R  E+  R   D SR  R  SP+ RGG   SPGG       RE S ERRA
Sbjct: 181 EFYR-HGSGKRSSERSERQERDGSRGRRQASPK-RGG---SPGGG------REGSEERRA 240

[Close]

BLAST of MELO3C024515.jh1.t2 vs. TAIR 10
Match: AT1G10320.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 145.2 bits (365), Expect = 8.9e-35
Identity = 67/167 (40.12%), Postives = 103/167 (61.68%), Query Frame = 0


Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA 68
           FGTE+D+ +CPF+ K GACR G RCSR+H  P+ S TLL+ NMY  P +       +G  
Sbjct: 237 FGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWE--QDEGLE 296

Query: 69  LDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEEQAANALHN 128
               + +  +E+FYED+  E  KYG+L +  +C N + H+ GNVYV +R  E A  A  +
Sbjct: 297 YTDEEAELCYEEFYEDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQS 356

Query: 129 LNGRFYAGRPIIVDFSPVTDFREATCRQYEEN---VCNRGGYCNFMH 173
           +NGR++AG+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H
Sbjct: 357 INGRYFAGKQVNCEFVNISRWKVAICGEYMKSRLKTCSRGSACNFIH 401

The following BLAST results are available for this feature:

BLAST of MELO3C024515.jh1.t2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462532.1	2.02e-224	100.00	PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo] >XP_00846253...	[more]
KAA0025291.1	5.12e-224	100.00	splicing factor U2af small subunit B-like [Cucumis melo var. makuwa]	[more]
XP_004143302.1	8.14e-220	98.42	splicing factor U2af small subunit B [Cucumis sativus] >XP_011657685.1 splicing ...	[more]
TYK07378.1	2.06e-217	100.00	enolase [Cucumis melo var. makuwa]	[more]
XP_038882602.1	2.08e-217	96.51	splicing factor U2af small subunit B-like [Benincasa hispida] >XP_038882603.1 sp...	[more]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMY5	9.4e-106	71.63	Splicing factor U2af small subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF35B ...	[more]
Q9S709	4.6e-105	68.85	Splicing factor U2af small subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF35A ...	[more]
Q9ZQW8	2.2e-102	68.84	Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q6AUG0	8.2e-102	65.68	Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
A1A4K8	7.0e-69	55.23	Splicing factor U2AF 35 kDa subunit OS=Bos taurus OX=9913 GN=U2AF1 PE=2 SV=1	[more]

BLAST of MELO3C024515.jh1.t2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH52	9.77e-225	100.00	splicing factor U2af small subunit B-like OS=Cucumis melo OX=3656 GN=LOC10350087...	[more]
A0A5A7SM18	2.48e-224	100.00	Splicing factor U2af small subunit B-like OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KF96	3.94e-220	98.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450380 PE=4 SV=1	[more]
A0A5D3C894	9.99e-218	100.00	Phosphopyruvate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1EGF6	1.65e-209	94.29	splicing factor U2af small subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of MELO3C024515.jh1.t2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42820.2	6.6e-107	71.63	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G42820.1	6.6e-107	71.63	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G27650.1	3.3e-106	68.85	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G27650.2	5.1e-75	63.92	U2 snRNP auxiliary factor small subunit, putative	[more]
AT1G10320.1	8.9e-35	40.12	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 75..90 score: 55.97 coord: 165..177 score: 65.73 coord: 18..37 score: 85.68 coord: 103..125 score: 65.42 coord: 130..154 score: 64.0 coord: 37..57 score: 57.14
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 1..300
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 67..142 e-value: 4.4E-7 score: 39.5
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 148..174 e-value: 0.41 score: 19.4 coord: 13..39 e-value: 0.0065 score: 25.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 150..173 e-value: 3.1E-4 score: 20.6 coord: 14..37 e-value: 5.0E-7 score: 29.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 12..40 score: 13.112443
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 148..175 score: 10.464717
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 45..142 e-value: 2.2E-4 score: 30.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..139 e-value: 5.3E-7 score: 29.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 44..146 score: 11.622288
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..145 e-value: 1.5E-30 score: 107.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 238..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..237
None	No IPR available	PANTHER	PTHR12620:SF43	RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED	coord: 1..300
None	No IPR available	CDD	cd12539	RRM_U2AF35B	coord: 44..145 e-value: 6.67857E-66 score: 200.283
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C024515.jh1	MELO3C024515.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024515.jh1.t2.exon	MELO3C024515.jh1.t2.exon	exon
MELO3C024515.jh1.t2.exon	MELO3C024515.jh1.t2.exon_2	exon
MELO3C024515.jh1.t2.exon	MELO3C024515.jh1.t2.exon_3	exon
MELO3C024515.jh1.t2.exon	MELO3C024515.jh1.t2.exon_4	exon
MELO3C024515.jh1.t2.exon	MELO3C024515.jh1.t2.exon_5	exon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024515.jh1.t2.stop_codon	MELO3C024515.jh1.t2.stop_codon	stop_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024515.jh1.t2.cds	MELO3C024515.jh1.t2.cds	CDS
MELO3C024515.jh1.t2.cds	MELO3C024515.jh1.t2.cds_2	CDS
MELO3C024515.jh1.t2.cds	MELO3C024515.jh1.t2.cds_3	CDS
MELO3C024515.jh1.t2.cds	MELO3C024515.jh1.t2.cds_4	CDS
MELO3C024515.jh1.t2.cds	MELO3C024515.jh1.t2.cds_5	CDS

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024515.jh1.t2.start_codon	MELO3C024515.jh1.t2.start_codon	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C024515.jh1.t2	MELO3C024515.jh1.t2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0089701	U2AF complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding