MELO3C024459.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C024459.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription factor, TCP
Location	chr08: 9353286 .. 9354143 (+)
Sequence length	858
RNA-Seq Expression	MELO3C024459.1
Synteny	MELO3C024459.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTCTCTCTATTCATTCCTCAGCTGTCAGCTCTCAGCTCTCATCTCAAACCCTAAAATCTTCCTCCGATCAAAACCCTCGAAACTACCTTCTCTTCTCCCCTTTCACTCCTTCCTCAACACAGTTGTTTCAACTATGGGATCGGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCGTCTCCGGCCACCATCTCGCGCCAATCCCTCCTCCCTCGCAAGTCAAACACCTCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCCGCCCTCTGTGCTGCCCGCATCTTTCAGTTAACGCGCGAGCTCGGACATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCAATCTCCACCGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGATTCAGCCAGTGACGGTGGGCGGCAGTGGGCAGGGGATGTTCTCTATGCCACCACCGAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTATCGCCACATGCCGTTCACGGCGCTGTTGTTGCAGCCGTCGACGGGGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTCAGAGAATAATGGAAAATTGGAAGGATTAAACCGACACAGATAGGAGTCTAAAATTGCAGTATGGAGACTTTTTTTTACCCTTTTTTCAGCTCTTCTTCTTTCTCCTTC

mRNA sequence

CCCTCTCTCTATTCATTCCTCAGCTGTCAGCTCTCAGCTCTCATCTCAAACCCTAAAATCTTCCTCCGATCAAAACCCTCGAAACTACCTTCTCTTCTCCCCTTTCACTCCTTCCTCAACACAGTTGTTTCAACTATGGGATCGGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCGTCTCCGGCCACCATCTCGCGCCAATCCCTCCTCCCTCGCAAGTCAAACACCTCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCCGCCCTCTGTGCTGCCCGCATCTTTCAGTTAACGCGCGAGCTCGGACATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCAATCTCCACCGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGATTCAGCCAGTGACGGTGGGCGGCAGTGGGCAGGGGATGTTCTCTATGCCACCACCGAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTATCGCCACATGCCGTTCACGGCGCTGTTGTTGCAGCCGTCGACGGGGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTCAGAGAATAATGGAAAATTGGAAGGATTAAACCGACACAGATAGGAGTCTAAAATTGCAGTATGGAGACTTTTTTTTACCCTTTTTTCAGCTCTTCTTCTTTCTCCTTC

Coding sequence (CDS)

CCCTCTCTCTATTCATTCCTCAGCTGTCAGCTCTCAGCTCTCATCTCAAACCCTAAAATCTTCCTCCGATCAAAACCCTCGAAACTACCTTCTCTTCTCCCCTTTCACTCCTTCCTCAACACAGTTGTTTCAACTATGGGATCGGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCGTCTCCGGCCACCATCTCGCGCCAATCCCTCCTCCCTCGCAAGTCAAACACCTCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCCGCCCTCTGTGCTGCCCGCATCTTTCAGTTAACGCGCGAGCTCGGACATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCAATCTCCACCGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGATTCAGCCAGTGACGGTGGGCGGCAGTGGGCAGGGGATGTTCTCTATGCCACCACCGAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTATCGCCACATGCCGTTCACGGCGCTGTTGTTGCAGCCGTCGACGGGGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTCAGAGAATAA

Protein sequence

PSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEETEERQEEEVFRE

Homology

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BLAST of MELO3C024459.1 vs. NCBI nr
Match: XP_008462463.1 (PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo])

HSP 1 Score: 485.0 bits (1247), Expect = 4.1e-133
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   PSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSD 60
           PSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSD
Sbjct: 71  PSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSD 130

Query: 61  PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 120
           PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL
Sbjct: 131 PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 190

Query: 121 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 180
           CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV
Sbjct: 191 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 250

Query: 181 SCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEE 240
           SCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEE
Sbjct: 251 SCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEE 310

Query: 241 TEERQEEEVFRE 253
           TEERQEEEVFRE
Sbjct: 311 TEERQEEEVFRE 322

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BLAST of MELO3C024459.1 vs. NCBI nr
Match: TYK07305.1 (transcription factor TCP11-like [Cucumis melo var. makuwa])

HSP 1 Score: 396.7 bits (1018), Expect = 1.5e-106
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 105
           MGSDIVLH FPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 106 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 165
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 166 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 225
           ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFS+PPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 226 MPFTALLLQPSTGEETEERQEEEVFRE 253
           MPFTALLLQPSTGEETEERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVFRE 207

[Close]

BLAST of MELO3C024459.1 vs. NCBI nr
Match: XP_004143267.1 (transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein Csa_003031 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 6.1e-105
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 105
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 106 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 165
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 166 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 225
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF+MPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 226 MPFTALLLQPSTGEETEERQEEEVFRE 253
           MPFTALLLQPST EETEERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTAEETEERQEEEVFRE 207

[Close]

BLAST of MELO3C024459.1 vs. NCBI nr
Match: XP_038882900.1 (transcription factor TCP11 [Benincasa hispida])

HSP 1 Score: 335.9 bits (860), Expect = 3.0e-88
Identity = 174/207 (84.06%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 105
           MGS+IVLHKFPS+SD H+  PTASHSVVGSNSS A I+ Q+++PRKS TSL   SS+DRH
Sbjct: 1   MGSEIVLHKFPSTSD-HNSQPTASHSVVGSNSSLANITPQAVVPRKSTTSL---SSRDRH 60

Query: 106 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 165
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120

Query: 166 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 225
           IST+S AMASS RS+SCR+QP+TVGG GQGMF+MPPPSCRLDLCQPVGMEYSA GNDYRH
Sbjct: 121 ISTLSPAMASSARSISCRVQPLTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAVGNDYRH 180

Query: 226 MPFTALLLQPSTGEETEERQEEEVFRE 253
           MPFTALLLQPST EE EERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTAEEAEERQEEEVFRE 203

[Close]

BLAST of MELO3C024459.1 vs. NCBI nr
Match: XP_023543697.1 (transcription factor TCP11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329.3 bits (843), Expect = 2.8e-86
Identity = 170/208 (81.73%), Postives = 186/208 (89.42%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSL-SSSSSKDR 105
           MGS+I LHKFPSSSD HSQP  ASHSVV SN+SP  +++QS++PRKS  SL SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 106 HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 165
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 166 PISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYR 225
           PIST+S AMASSG SVSCR+Q V V    QGMF+MPPPSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTISPAMASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 226 HMPFTALLLQPSTGEETEERQEEEVFRE 253
           HMPFTALLLQPST +E EERQEEEVFRE
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVFRE 208

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BLAST of MELO3C024459.1 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.5e-34
Identity = 89/153 (58.17%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 98  SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 157
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 158 TGTVPSGPISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYS 217
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 218 AAGNDYRHMPFTALLLQP--STGEETEERQEEE 249
              N Y HMPFTA+LL+P  +T E   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of MELO3C024459.1 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 61  PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 120
           P S PP  S     S+++ AT +++              S+KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKR--------------STKDRHTKVDGRGRRIRMPAL 93

Query: 121 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 180
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 181 S 182
           S
Sbjct: 154 S 139

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BLAST of MELO3C024459.1 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 56  PSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRV 115
           P S    SQP T    ++ +    A ++ +          L  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAK-------KPPLKRASTKDRHTKVDGRGRRI 138

Query: 116 RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 175
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 176 SGRSVS 182
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]

BLAST of MELO3C024459.1 vs. ExPASy Swiss-Prot
Match: Q9LQF0 (Transcription factor TCP23 OS=Arabidopsis thaliana OX=3702 GN=TCP23 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-25
Identity = 64/120 (53.33%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 68  ASHSVVGSNSSPATISRQSLLPRKSNTSLSSSS------SKDRHIKVNGRGRRVRMPALC 127
           ++H V        ++S  +  P  + T+++++       SKDRHIKV+GRGRR+RMPA+C
Sbjct: 16  SAHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAKRPSKDRHIKVDGRGRRIRMPAIC 75

Query: 128 AARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 182
           AAR+FQLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 76  AARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]

BLAST of MELO3C024459.1 vs. ExPASy Swiss-Prot
Match: Q53PH2 (Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.5e-25
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 101 SKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGT 160
           +KDRH KV GRGRR+RMPALCAAR+FQLTRELGH+++GETIEWLL+QAEP+I+AATGTGT
Sbjct: 152 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 211

Query: 161 VPSGPISTVSSAMASSGRSVSCRIQP 187
           +P+   S   S  +++  S S R  P
Sbjct: 212 IPANFSSLAVSLRSAASHSSSPRAAP 237

[Close]

BLAST of MELO3C024459.1 vs. ExPASy TrEMBL
Match: A0A1S3CGZ3 (uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.0e-133
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0


Query: 1   PSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSD 60
           PSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSD
Sbjct: 71  PSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSD 130

Query: 61  PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 120
           PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL
Sbjct: 131 PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 190

Query: 121 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 180
           CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV
Sbjct: 191 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 250

Query: 181 SCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEE 240
           SCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEE
Sbjct: 251 SCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEE 310

Query: 241 TEERQEEEVFRE 253
           TEERQEEEVFRE
Sbjct: 311 TEERQEEEVFRE 322

[Close]

BLAST of MELO3C024459.1 vs. ExPASy TrEMBL
Match: A0A5D3C791 (Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00190 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 7.0e-107
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 105
           MGSDIVLH FPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 106 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 165
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 166 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 225
           ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFS+PPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 226 MPFTALLLQPSTGEETEERQEEEVFRE 253
           MPFTALLLQPSTGEETEERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVFRE 207

[Close]

BLAST of MELO3C024459.1 vs. ExPASy TrEMBL
Match: A0A0A0KH86 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 5.6e-104
Identity = 198/205 (96.59%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 105
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 106 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 165
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 166 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 225
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF+MPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 226 MPFTALLLQPSTGEETEERQEEEVF 251
           MPFTALLLQPST EETEERQEEE+F
Sbjct: 181 MPFTALLLQPSTAEETEERQEEELF 205

[Close]

BLAST of MELO3C024459.1 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 6.8e-86
Identity = 169/208 (81.25%), Postives = 185/208 (88.94%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSL-SSSSSKDR 105
           MGS+I LHKFPSSSD HSQP  ASHSVV SN+SP  +++QS++PRKS  SL SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 106 HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 165
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 166 PISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYR 225
           PIST+S AMASS  SVSCR+Q V V    QGMF+MPPPSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTISPAMASSALSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 226 HMPFTALLLQPSTGEETEERQEEEVFRE 253
           HMPFTALLLQPST +E EERQEEEVFRE
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVFRE 208

[Close]

BLAST of MELO3C024459.1 vs. ExPASy TrEMBL
Match: A0A6J1IR93 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 8.7e-81
Identity = 164/208 (78.85%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 46  MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSL-SSSSSKDR 105
           MGS+I LHKFPSSSD HSQ   ASHSVV +NSSP  +++QS++PRKS  SL SSSSS+DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQSTAASHSVVRNNSSPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 106 HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 165
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 166 PISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYR 225
           PIST++ AMASS  SVSCR+Q V V    QGMF+M  PSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTITPAMASSAPSVSCRVQSVGVAADEQGMFAM--PSCRLDLCQPVGLDYSAAGNDYR 180

Query: 226 HMPFTALLLQPSTGEETEERQEEEVFRE 253
           HMPFTALLLQPST +E EERQE EVFRE
Sbjct: 181 HMPFTALLLQPSTADEAEERQEGEVFRE 206

[Close]

BLAST of MELO3C024459.1 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 146.4 bits (368), Expect = 3.2e-35
Identity = 89/153 (58.17%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 98  SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 157
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 158 TGTVPSGPISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYS 217
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 218 AAGNDYRHMPFTALLLQP--STGEETEERQEEE 249
              N Y HMPFTA+LL+P  +T E   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of MELO3C024459.1 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 121.7 bits (304), Expect = 8.4e-28
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 61  PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 120
           P S PP  S     S+++ AT +++              S+KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKR--------------STKDRHTKVDGRGRRIRMPAL 93

Query: 121 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 180
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 181 S 182
           S
Sbjct: 154 S 139

[Close]

BLAST of MELO3C024459.1 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 56  PSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRV 115
           P S    SQP T    ++ +    A ++ +          L  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAK-------KPPLKRASTKDRHTKVDGRGRRI 138

Query: 116 RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 175
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 176 SGRSVS 182
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]

BLAST of MELO3C024459.1 vs. TAIR 10
Match: AT1G35560.1 (TCP family transcription factor )

HSP 1 Score: 118.2 bits (295), Expect = 9.3e-27
Identity = 64/120 (53.33%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 68  ASHSVVGSNSSPATISRQSLLPRKSNTSLSSSS------SKDRHIKVNGRGRRVRMPALC 127
           ++H V        ++S  +  P  + T+++++       SKDRHIKV+GRGRR+RMPA+C
Sbjct: 16  SAHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAKRPSKDRHIKVDGRGRRIRMPAIC 75

Query: 128 AARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 182
           AAR+FQLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 76  AARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]

BLAST of MELO3C024459.1 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-25
Identity = 55/83 (66.27%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 99  SSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGT 158
           +S+KDRH KV GRGRR+RMPA+CAAR+FQLTRELGH+S+GETIEWLL+QAEP++IAATGT
Sbjct: 50  TSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGT 109

Query: 159 GTVPSGPISTVSSAMASSGRSVS 182
           GT+P+   ++++ ++ SS  S+S
Sbjct: 110 GTIPAN-FTSLNISLRSSRSSLS 131

The following BLAST results are available for this feature:

BLAST of MELO3C024459.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462463.1	4.1e-133	100.00	PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo]	[more]
TYK07305.1	1.5e-106	99.03	transcription factor TCP11-like [Cucumis melo var. makuwa]	[more]
XP_004143267.1	6.1e-105	97.10	transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein ...	[more]
XP_038882900.1	3.0e-88	84.06	transcription factor TCP11 [Benincasa hispida]	[more]
XP_023543697.1	2.8e-86	81.73	transcription factor TCP11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C024459.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK7	4.5e-34	58.17	Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1	[more]
Q9C518	1.2e-26	55.37	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]
Q93Z00	2.0e-26	52.38	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q9LQF0	1.3e-25	53.33	Transcription factor TCP23 OS=Arabidopsis thaliana OX=3702 GN=TCP23 PE=1 SV=1	[more]
Q53PH2	8.5e-25	65.12	Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 ...	[more]

BLAST of MELO3C024459.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGZ3	2.0e-133	100.00	uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=...	[more]
A0A5D3C791	7.0e-107	99.03	Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0KH86	5.6e-104	96.59	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV...	[more]
A0A6J1EK07	6.8e-86	81.25	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE...	[more]
A0A6J1IR93	8.7e-81	78.85	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4...	[more]

BLAST of MELO3C024459.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37000.1	3.2e-35	58.17	TCP family transcription factor	[more]
AT1G58100.1	8.4e-28	55.37	TCP family transcription factor	[more]
AT3G47620.1	1.4e-27	52.38	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT1G35560.1	9.3e-27	53.33	TCP family transcription factor	[more]
AT1G69690.1	1.3e-25	66.27	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 100..196 e-value: 1.4E-28 score: 100.4
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 101..155 score: 26.536804
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..103
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 82..179
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 82..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C024459	MELO3C024459	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024459.1:exon:231016	MELO3C024459.1:exon:231016	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024459.1:cds	MELO3C024459.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024459.1:three_prime_utr	MELO3C024459.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C024459.1	MELO3C024459.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity