MELO3C021436.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C021436.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	60S acidic ribosomal protein family
Location	chr11: 27127425 .. 27128624 (-)
Sequence length	827
RNA-Seq Expression	MELO3C021436.1
Synteny	MELO3C021436.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACTCTTTGACTGACGGCTCCGATCTCTCCCACTCTTCGTTGCGGCTTCTGTTCCGAACTTTCTCAAGTACTCTTTCATCTCCCAATCTTGGTTTTTTCGATTGATTTTTGCTGTGTAAGTTCTTCTCATTGTAGTGTTTAATATTTGATGTTGTTGAAACAGGAATGAAGGTAGTCGCTGCATATTTGTTGGCCGTTCTAGGTGGCAACACCAGCCCCGGAGTCGATGATGTGAAGGCTATTCTTAATTCAGGTTCTTCTATTGCAAACTATTTGTCTTTTAATCATAGATTTATTTGCTACTCCACTGGTTGTTTTATTGCTTTCCGAGATAGATTTGATGCTCTAGGATTTGAAAATTTGAAGTGATTGGACTTTGTTCGATTCGAAAGTCTAGGTTAGACTGCAGTTTGTTCATGATTTAGTTAGGGAGGAGCTGTAAATTAAGTGAAAATCTTGAATGGGCAGTGTAACTGAATTTGCATTAAGGTGGGGTTTTTAATTTTTATGTTCAGTTGGGGTTGAGATAGATGAAGAGAGGATCACCTTGCTCCTATCGGAAGTTAAAGGAAAGGATGTCACAGAGTTGATAGCCTCAGGACGGGAGAAGTTGGCATCAGTGCCGTCTGGTGGTGGTGCAATCGCCGTCTCCGCCTCTGCCGGCGGTGCCGCTGGTGGTGGTGCAGCACCAGCCCCAGCCGAGCAGAAGAAAGAAGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGTAAGTGTTTAAGCTTCACCCATTTTGATTTGCTTTGATGTGTTCCAATCTGTGAATGACTTGCTCTATGAATTTTATGTTACCTAAATTTTATGTTCCATCTTTCTGCAGGATATGGGTTTCAGCCTCTTTGACTAAGCAACTTATTTGGTGTCGTTATCAGTTAGTGTTTTTAGTTGATTTTCGTTCAAGTTTCCGGGCTTTGGTAGCTTGGTAGGGTTTTTTCTTTTTTACTTGTTTTGGAACTCAAAAATTTTGATAGAGGAAAGTTCATTTGTTCAACTTCAATATTTCAGTAATTACTGTCATTTGACTACTTGTGATTTATACTTCCCACTGTCTCTCGTCTCCCTGTTCATGATTTGTTTTGGCTTATGCTAATTTGCATCACTGATTGTTTTTATATTATGTGTGAGTCTGACAATTACATAGGAAATTTTCATGCTTTTAC

mRNA sequence

CCACTCTTTGACTGACGGCTCCGATCTCTCCCACTCTTCGTTGCGGCTTCTGTTCCGAACTTTCTCAAGTACTCTTTCATCTCCCAATCTTGGTTTTTTCGATTGATTTTTGCTGTGTAAGTTCTTCTCATTGTAGTGTTTAATATTTGATGTTGTTGAAACAGGAATGAAGGTAGTCGCTGCATATTTGTTGGCCGTTCTAGGTGGCAACACCAGCCCCGGAGTCGATGATGTGAAGGCTATTCTTAATTCAGTTGGGGTTGAGATAGATGAAGAGAGGATCACCTTGCTCCTATCGGAAGTTAAAGGAAAGGATGTCACAGAGTTGATAGCCTCAGGACGGGAGAAGTTGGCATCAGTGCCGTCTGGTGGTGGTGCAATCGCCGTCTCCGCCTCTGCCGGCGGTGCCGCTGGTGGTGGTGCAGCACCAGCCCCAGCCGAGCAGAAGAAAGAAGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTAAGCAACTTATTTGGTGTCGTTATCAGTTAGTGTTTTTAGTTGATTTTCGTTCAAGTTTCCGGGCTTTGGTAGCTTGGTAGGGTTTTTTCTTTTTTACTTGTTTTGGAACTCAAAAATTTTGATAGAGGAAAGTTCATTTGTTCAACTTCAATATTTCAGTAATTACTGTCATTTGACTACTTGTGATTTATACTTCCCACTGTCTCTCGTCTCCCTGTTCATGATTTGTTTTGGCTTATGCTAATTTGCATCACTGATTGTTTTTATATTATGTGTGAGTCTGACAATTACATAGGAAATTTTCATGCTTTTAC

Coding sequence (CDS)

ATGAAGGTAGTCGCTGCATATTTGTTGGCCGTTCTAGGTGGCAACACCAGCCCCGGAGTCGATGATGTGAAGGCTATTCTTAATTCAGTTGGGGTTGAGATAGATGAAGAGAGGATCACCTTGCTCCTATCGGAAGTTAAAGGAAAGGATGTCACAGAGTTGATAGCCTCAGGACGGGAGAAGTTGGCATCAGTGCCGTCTGGTGGTGGTGCAATCGCCGTCTCCGCCTCTGCCGGCGGTGCCGCTGGTGGTGGTGCAGCACCAGCCCCAGCCGAGCAGAAGAAAGAAGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTCAGCCTCTTTGACTAA

Protein sequence

MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGREKLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD

Homology

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BLAST of MELO3C021436.1 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-34
Identity = 85/115 (73.91%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKV+AAYLLAVLGGNTSP  DDVK+IL SVG E DEE++  LL+E+K KD+TE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           +L+SVPSGGGAI + A A   AGGGAAPA  E KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAPA-EEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of MELO3C021436.1 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-33
Identity = 84/115 (73.04%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MK VAAYLLAVL GN SP  DD+ AIL SVG E+D E++ LLLS++ GKD+TELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           K ASVP GGG +AV+A+A   A GGAAPA AE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAA--PAAGGAAPA-AEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of MELO3C021436.1 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 80/116 (68.97%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAA+LLAVL G  SP   D+K IL SVG E ++ +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG +AV+++  G  GGG APA AE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPA-AESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of MELO3C021436.1 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.0e-30
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVG E ++ +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG     ASA    GGG   + AE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of MELO3C021436.1 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.2e-30
Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKV AA+LLAVLGGN +P  D++K I+ +VG ++D E I LLL EV GKD+ ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG   V+ SA  ++GGG A APAE KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGG---VAVSAAPSSGGGGAAAPAE-KKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of MELO3C021436.1 vs. NCBI nr
Match: XP_008458601.1 (PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo] >KAA0033390.1 60S acidic ribosomal protein P2B-like [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 8.2e-49
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. NCBI nr
Match: XP_004145795.1 (60S acidic ribosomal protein P2B [Cucumis sativus] >KGN46936.1 hypothetical protein Csa_020720 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-45
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EIDEERITLLL+EVKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAIAVSA+AGGA GGGAA APAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 100/115 (86.96%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+RI  LLS+VKGKD+TELIASGRE
Sbjct: 70  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 129

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+ ++A AGGAAGGGAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 130 KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 184

[Close]

BLAST of MELO3C021436.1 vs. NCBI nr
Match: KAG7010354.1 (60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-42
Identity = 100/115 (86.96%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+RI  LLS+VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+ ++A AGGAAGGGAAPA AEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. NCBI nr
Match: XP_022152975.1 (60S acidic ribosomal protein P2B-like [Momordica charantia] >XP_022152976.1 60S acidic ribosomal protein P2B-like [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-42
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVGVE+DE+RI  LLS+VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+AV+A AGGAAGGGAAPA AE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. ExPASy TrEMBL
Match: A0A5A7SR49 (60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00400 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.0e-49
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. ExPASy TrEMBL
Match: A0A1S3C8T5 (60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.0e-49
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. ExPASy TrEMBL
Match: A0A0A0KGP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151730 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.2e-45
Identity = 107/115 (93.04%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EIDEERITLLL+EVKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKSILNSVGAEIDEERITLLLAEVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAIAVSA+AGGA GGGAA APAEQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAIAVSAAAGGATGGGAAAAPAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. ExPASy TrEMBL
Match: A0A6J1DJB9 (60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC111020580 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 100/115 (86.96%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPG DDVK ILNSVGVE+DE+RI  LLS+VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+AV+A AGGAAGGGAAPA AE+KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. ExPASy TrEMBL
Match: A0A6J1J9Z4 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111483902 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVLGGNTSPG+DDVK ILNSVG E+DE+RI  LLS+VKGKD+TELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGA+ ++A AGGAAGGGAAPA  EQKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of MELO3C021436.1 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.0 bits (336), Expect = 7.5e-32
Identity = 80/116 (68.97%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAA+LLAVL G  SP   D+K IL SVG E ++ +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPS-GGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPS GGG +AV+++  G  GGG APA AE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPA-AESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of MELO3C021436.1 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-31
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVG E ++ +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG     ASA    GGG   + AE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of MELO3C021436.1 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-31
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVG E ++ +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG     ASA    GGG   + AE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of MELO3C021436.1 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-31
Identity = 78/115 (67.83%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKVVAAYLLAVL G  SP   D+K IL SVG E ++ +I LLL EVKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG     ASA    GGG   + AE KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of MELO3C021436.1 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-31
Identity = 78/115 (67.83%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKVVAAYLLAVLGGNTSPGVDDVKAILNSVGVEIDEERITLLLSEVKGKDVTELIASGRE 60
           MKV AA+LLAVLGGN +P  D++K I+ +VG ++D E I LLL EV GKD+ ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAIAVSASAGGAAGGGAAPAPAEQKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG   V+ SA  ++GGG A APAE KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGG---VAVSAAPSSGGGGAAAPAE-KKEAKKEEKEESDDDMGFSLFE 111

The following BLAST results are available for this feature:

BLAST of MELO3C021436.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	2.7e-34	73.91	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	1.7e-33	73.04	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
P51407	1.1e-30	68.97	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9SLF7	4.0e-30	67.83	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
Q9LXM8	5.2e-30	67.83	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]

BLAST of MELO3C021436.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458601.1	8.2e-49	100.00	PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis melo] >KAA0033390.1 60...	[more]
XP_004145795.1	2.5e-45	93.04	60S acidic ribosomal protein P2B [Cucumis sativus] >KGN46936.1 hypothetical prot...	[more]
KAG6570492.1	1.2e-42	86.96	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7010354.1	1.2e-42	86.96	60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022152975.1	2.6e-42	86.96	60S acidic ribosomal protein P2B-like [Momordica charantia] >XP_022152976.1 60S ...	[more]

BLAST of MELO3C021436.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR49	4.0e-49	100.00	60S acidic ribosomal protein P2B-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C8T5	4.0e-49	100.00	60S acidic ribosomal protein P2B-like OS=Cucumis melo OX=3656 GN=LOC103497955 PE...	[more]
A0A0A0KGP6	1.2e-45	93.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151730 PE=3 SV=1	[more]
A0A6J1DJB9	1.2e-42	86.96	60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A6J1J9Z4	1.6e-42	86.09	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11148390...	[more]

BLAST of MELO3C021436.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27720.1	7.5e-32	68.97	60S acidic ribosomal protein family	[more]
AT2G27710.1	2.8e-31	67.83	60S acidic ribosomal protein family	[more]
AT2G27710.2	2.8e-31	67.83	60S acidic ribosomal protein family	[more]
AT2G27710.3	2.8e-31	67.83	60S acidic ribosomal protein family	[more]
AT3G44590.2	3.7e-31	67.83	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 3.2E-26 score: 93.3
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..114 e-value: 2.2E-25 score: 89.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..115
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..115
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..115
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..115 e-value: 2.4892E-36 score: 117.75
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..115 score: 16.876865

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021436	MELO3C021436	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021436.1:exon:335407	MELO3C021436.1:exon:335407	exon
MELO3C021436.1:exon:335406	MELO3C021436.1:exon:335406	exon
MELO3C021436.1:exon:335405	MELO3C021436.1:exon:335405	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021436.1:three_prime_utr	MELO3C021436.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021436.1:cds	MELO3C021436.1:cds	CDS
MELO3C021436.1:cds	MELO3C021436.1:cds_2	CDS
MELO3C021436.1:cds	MELO3C021436.1:cds_3	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021436.1:five_prime_utr	MELO3C021436.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C021436.1	MELO3C021436.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome