MELO3C021372.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C021372.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 27670930 .. 27671578 (-)
Sequence length	649
RNA-Seq Expression	MELO3C021372.1
Synteny	MELO3C021372.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATCACAACTCAACTAACCCCACCTCCCAAAAACCAAAAGCTAGAAAAAAAAGACCCAATTCTTTTTCTTTGTTTATTCCTTATAATAAACCACCAAAATTGATTTTTATTTATTTATAATAATAATAATCAATATCCCATCATATATGGACCAAATCAAAGATGCTTCTTCATTTTTCCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCATGAATTAGAGTCTGCTGTGGATGATGATGATCAGGAGGATGCTTGCTCCTGCAGTTGCAATAATAATGATTTTTCTATTGATGATTTGAGAGCCCTTGATTTCCAAGACGATGGGGATAATGGTGATAGAGATCTTGATCAAGACATTTGTTTGATTGGTGACGGCGGAAGGCGGCGGAGCGGGGCAGCGCTGAAGTATGGTTACGAAGAAGAGGAGGAGGAAGAAGAAGAAGAGTCGAGTGATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGCTCTTTTGGGACACTTGCATGGCGGGAGGGTACCCCTGAACCTTTAAATTTGTTGTTCTGTCATAAACCCTATATCTCATTTTAGTTACAAAACCACTTTTATGATTATTCTATTTGGATCCATTGAGA

mRNA sequence

ACAATCACAACTCAACTAACCCCACCTCCCAAAAACCAAAAGCTAGAAAAAAAAGACCCAATTCTTTTTCTTTGTTTATTCCTTATAATAAACCACCAAAATTGATTTTTATTTATTTATAATAATAATAATCAATATCCCATCATATATGGACCAAATCAAAGATGCTTCTTCATTTTTCCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCATGAATTAGAGTCTGCTGTGGATGATGATGATCAGGAGGATGCTTGCTCCTGCAGTTGCAATAATAATGATTTTTCTATTGATGATTTGAGAGCCCTTGATTTCCAAGACGATGGGGATAATGGTGATAGAGATCTTGATCAAGACATTTGTTTGATTGGTGACGGCGGAAGGCGGCGGAGCGGGGCAGCGCTGAAGTATGGTTACGAAGAAGAGGAGGAGGAAGAAGAAGAAGAGTCGAGTGATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGCTCTTTTGGGACACTTGCATGGCGGGAGGGTACCCCTGAACCTTTAAATTTGTTGTTCTGTCATAAACCCTATATCTCATTTTAGTTACAAAACCACTTTTATGATTATTCTATTTGGATCCATTGAGA

Coding sequence (CDS)

ATGGACCAAATCAAAGATGCTTCTTCATTTTTCCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAATTATTGTCTCATCCTCATGAATTAGAGTCTGCTGTGGATGATGATGATCAGGAGGATGCTTGCTCCTGCAGTTGCAATAATAATGATTTTTCTATTGATGATTTGAGAGCCCTTGATTTCCAAGACGATGGGGATAATGGTGATAGAGATCTTGATCAAGACATTTGTTTGATTGGTGACGGCGGAAGGCGGCGGAGCGGGGCAGCGCTGAAGTATGGTTACGAAGAAGAGGAGGAGGAAGAAGAAGAAGAGTCGAGTGATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAGCTCTTTTGGGACACTTGCATGGCGGGAGGGTACCCCTGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRALDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNEMEDKLFWDTCMAGGYP

Homology

[Close]

BLAST of MELO3C021372.1 vs. NCBI nr
Match: KAA0033453.1 (hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60

Query: 61  LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNE 120
           LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNE
Sbjct: 61  LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNE 120

Query: 121 MEDKLFWDTCMAGGYP 137
           MEDKLFWDTCMAGGYP
Sbjct: 121 MEDKLFWDTCMAGGYP 136

[Close]

BLAST of MELO3C021372.1 vs. NCBI nr
Match: KAE8646684.1 (hypothetical protein Csa_005604 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 104/126 (82.54%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 16  SADSEVDKLLSH-PHELESAVDD-DDQEDACSCSCNNNDFSIDDLRALDFQD--DGDNGD 75
           SADSEVDKLLSH PH+LESAVDD DDQEDACSCSCNNNDFSID     DFQD  DGDNGD
Sbjct: 31  SADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSID-----DFQDAYDGDNGD 90

Query: 76  RDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESS-DDVGVIRNMNEMEDKLFWDTC 135
              DQDI LIGDGGRRRSGA    GYEEEEEEEEEESS +DVG IRNMNEMEDK+FWDTC
Sbjct: 91  G--DQDIGLIGDGGRRRSGA----GYEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTC 145

Query: 136 MAGGYP 137
           MAGGYP
Sbjct: 151 MAGGYP 145

[Close]

BLAST of MELO3C021372.1 vs. NCBI nr
Match: KAG6575041.1 (hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-29
Identity = 85/140 (60.71%), Postives = 99/140 (70.71%), Query Frame = 0


Query: 4   IKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRALDF 63
           + +ASS FLWED+ADSEVD+LLSHPH+LESAV  DD EDA SCSC   D    D  A+D 
Sbjct: 1   MNNASSLFLWEDTADSEVDRLLSHPHQLESAV--DDPEDARSCSC---DDYATDRSAVDL 60

Query: 64  QDDGDNGDRDLDQDICLIGDGGR-------RRSGAALKYGYEEEEEEEEEESSDDVGVIR 123
           QDDGD    D D+ +   GD  R       R SGA L+Y   EE+EEEEEES+++VG IR
Sbjct: 61  QDDGDG---DEDRAVGSTGDDARSSHLDETRPSGATLEYS-SEEDEEEEEESNNNVGAIR 120

Query: 124 NMNEMEDKLFWDTCMAGGYP 137
           +MNEMEDKLFWDTCM GGYP
Sbjct: 121 DMNEMEDKLFWDTCMEGGYP 131

[Close]

BLAST of MELO3C021372.1 vs. NCBI nr
Match: KDO74975.1 (hypothetical protein CISIN_1g032474mg [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-09
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSID------DLR 65
           D SSF L E+SADSEVD L       ++ +   D++DA SCSC+  +   +      +L+
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67

Query: 66  ALDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNM- 125
             +F DDGD    D  + I            ++ K  + +  ++EEE SS D+G+  N+ 
Sbjct: 68  NEEFDDDGDGSSTDQHRQI---------NWSSSCKIWWADGADDEEEYSSWDIGINNNIS 127

Query: 126 ----NEMEDKLFWDTCMAGGYP 137
               +EMED+LFW+TCMA GYP
Sbjct: 128 RKVKDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of MELO3C021372.1 vs. NCBI nr
Match: GAY36063.1 (hypothetical protein CUMW_020050 [Citrus unshiu])

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-09
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRALDFQD 65
           D SSF L E+SADSEVD L       ++ +   D++DA SCSC+  +   +    LD+  
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAE---GLDYDH 67

Query: 66  DGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNM-----NE 125
           D  N + + D D        +   G + K  + +  ++EEE SS D+G+  N+     +E
Sbjct: 68  DHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISRKVKDE 127

Query: 126 MEDKLFWDTCMAGGYP 137
           MED+LFW+TCMA GYP
Sbjct: 128 MEDRLFWETCMAFGYP 140

[Close]

BLAST of MELO3C021372.1 vs. ExPASy TrEMBL
Match: A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60
           MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60

Query: 61  LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNE 120
           LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNE
Sbjct: 61  LDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNE 120

Query: 121 MEDKLFWDTCMAGGYP 137
           MEDKLFWDTCMAGGYP
Sbjct: 121 MEDKLFWDTCMAGGYP 136

[Close]

BLAST of MELO3C021372.1 vs. ExPASy TrEMBL
Match: A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.0e-49
Identity = 119/141 (84.40%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MDQIKDASSFFLWEDSADSEVDKLLSH-PHELESAVDD-DDQEDACSCSCNNNDFSIDDL 60
           MDQIKDASSFFLWEDSADSEVDKLLSH PH+LESAVDD DDQEDACSCSCNNNDFSID  
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSID-- 60

Query: 61  RALDFQD--DGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESS-DDVGVI 120
              DFQD  DGDNGD   DQDI LIGDGGRRRSGA    GYEEEEEEEEEESS +DVG I
Sbjct: 61  ---DFQDAYDGDNGDG--DQDIGLIGDGGRRRSGA----GYEEEEEEEEEESSNNDVGAI 120

Query: 121 RNMNEMEDKLFWDTCMAGGYP 137
           RNMNEMEDK+FWDTCMAGGYP
Sbjct: 121 RNMNEMEDKVFWDTCMAGGYP 130

[Close]

BLAST of MELO3C021372.1 vs. ExPASy TrEMBL
Match: A0A067G8N3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032474mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSID------DLR 65
           D SSF L E+SADSEVD L       ++ +   D++DA SCSC+  +   +      +L+
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDYDHELK 67

Query: 66  ALDFQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNM- 125
             +F DDGD    D  + I            ++ K  + +  ++EEE SS D+G+  N+ 
Sbjct: 68  NEEFDDDGDGSSTDQHRQI---------NWSSSCKIWWADGADDEEEYSSWDIGINNNIS 127

Query: 126 ----NEMEDKLFWDTCMAGGYP 137
               +EMED+LFW+TCMA GYP
Sbjct: 128 RKVKDEMEDRLFWETCMAFGYP 140

[Close]

BLAST of MELO3C021372.1 vs. ExPASy TrEMBL
Match: A0A2H5N748 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   DASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRALDFQD 65
           D SSF L E+SADSEVD L       ++ +   D++DA SCSC+  +   +    LD+  
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAE---GLDYDH 67

Query: 66  DGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNM-----NE 125
           D  N + + D D        +   G + K  + +  ++EEE SS D+G+  N+     +E
Sbjct: 68  DHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISRKVKDE 127

Query: 126 MEDKLFWDTCMAGGYP 137
           MED+LFW+TCMA GYP
Sbjct: 128 MEDRLFWETCMAFGYP 140

[Close]

BLAST of MELO3C021372.1 vs. ExPASy TrEMBL
Match: A0A7J7CXK2 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01570 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 53/134 (39.55%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 3   QIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRALD 62
           ++ D SSF L E SADSE+D    +     +  DDDD +DA SCSC        D   LD
Sbjct: 10  RVLDISSFLLVEGSADSEMDD--GYLDTFIAGDDDDDDDDAESCSC--------DSPVLD 69

Query: 63  FQDDGDNGDRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNEME 122
           F D  D+   ++  D     +     S   ++    EE EEEEE S D     +  +EME
Sbjct: 70  FSD--DDRHMNVHGDYHCWNNCNMWWSDLGIEGMAPEEGEEEEEVSLDLHKTRQAKDEME 129

Query: 123 DKLFWDTCMAGGYP 137
           DKLFW+TCM  GYP
Sbjct: 130 DKLFWETCMELGYP 131

The following BLAST results are available for this feature:

BLAST of MELO3C021372.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C021372.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033453.1	1.3e-69	100.00	hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa]	[more]
KAE8646684.1	2.4e-39	82.54	hypothetical protein Csa_005604 [Cucumis sativus]	[more]
KAG6575041.1	1.3e-29	60.71	hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KDO74975.1	2.6e-09	36.62	hypothetical protein CISIN_1g032474mg [Citrus sinensis]	[more]
GAY36063.1	3.4e-09	37.50	hypothetical protein CUMW_020050 [Citrus unshiu]	[more]

BLAST of MELO3C021372.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSL9	6.3e-70	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KBF3	8.0e-49	84.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1	[more]
A0A067G8N3	1.3e-09	36.62	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032474mg PE=4 SV=1	[more]
A0A2H5N748	1.6e-09	37.50	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_020050 PE=4 SV=1	[more]
A0A7J7CXK2	2.9e-06	39.55	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01570 ...	[more]

BLAST of MELO3C021372.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114
None	No IPR available	PANTHER	PTHR35726:SF5	SUBFAMILY NOT NAMED	coord: 2..136
None	No IPR available	PANTHER	PTHR35726	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 2..136

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021372	MELO3C021372	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021372.1:exon:335806	MELO3C021372.1:exon:335806	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021372.1:three_prime_utr	MELO3C021372.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021372.1:cds	MELO3C021372.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021372.1:five_prime_utr	MELO3C021372.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C021372.1	MELO3C021372.1-protein	polypeptide