MELO3C018975.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C018975.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr07: 14174948 .. 14175331 (+)
Sequence length	384
RNA-Seq Expression	MELO3C018975.jh1.t1
Synteny	MELO3C018975.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCATAAAGTTGAAGGTTCTAGTTCGAGTCAGAGAGTCGAATTAGAAGCATGGAACCCATTCATTGTTAATGGCAAGAAAATACCCATGACAAAGGAAAATATGAAGATCGTGCTCAGATTACTCCTCGAGGAAAAATTGAGGAGAGAGATTGTGGGGATGGTGAGAAAGGAAAGGATGGATAAGGAGGAGAAAGAAAGGAAGTTAAGGAGAGAAGAAGAAGATAAGAAAAGAATAGAAGAGGAAGTAAACGAGGAGGAAGTTAAAGAGGAAATACGTGAGATAGATGTCTCCTCGCTCATTGTGGAAATAGAATTTGCAAGGTGGCCAAGAAATCCTAAGGAAGACAGAGAAAGTTCGAACTGGGATTCTCAAAATTAA

mRNA sequence

ATGACCCATAAAGTTGAAGGTTCTAGTTCGAGTCAGAGAGTCGAATTAGAAGCATGGAACCCATTCATTGTTAATGGCAAGAAAATACCCATGACAAAGGAAAATATGAAGATCGTGCTCAGATTACTCCTCGAGGAAAAATTGAGGAGAGAGATTGTGGGGATGGTGAGAAAGGAAAGGATGGATAAGGAGGAGAAAGAAAGGAAGTTAAGGAGAGAAGAAGAAGATAAGAAAAGAATAGAAGAGGAAGTAAACGAGGAGGAAGTTAAAGAGGAAATACGTGAGATAGATGTCTCCTCGCTCATTGTGGAAATAGAATTTGCAAGGTGGCCAAGAAATCCTAAGGAAGACAGAGAAAGTTCGAACTGGGATTCTCAAAATTAA

Coding sequence (CDS)

ATGACCCATAAAGTTGAAGGTTCTAGTTCGAGTCAGAGAGTCGAATTAGAAGCATGGAACCCATTCATTGTTAATGGCAAGAAAATACCCATGACAAAGGAAAATATGAAGATCGTGCTCAGATTACTCCTCGAGGAAAAATTGAGGAGAGAGATTGTGGGGATGGTGAGAAAGGAAAGGATGGATAAGGAGGAGAAAGAAAGGAAGTTAAGGAGAGAAGAAGAAGATAAGAAAAGAATAGAAGAGGAAGTAAACGAGGAGGAAGTTAAAGAGGAAATACGTGAGATAGATGTCTCCTCGCTCATTGTGGAAATAGAATTTGCAAGGTGGCCAAGAAATCCTAAGGAAGACAGAGAAAGTTCGAACTGGGATTCTCAAAATTAA

Protein sequence

MTHKVEGSSSSQRVELEAWNPFIVNGKKIPMTKENMKIVLRLLLEEKLRREIVGMVRKERMDKEEKERKLRREEEDKKRIEEEVNEEEVKEEIREIDVSSLIVEIEFARWPRNPKEDRESSNWDSQN

Homology

[Close]

BLAST of MELO3C018975.jh1.t1 vs. NCBI nr
Match: KAA0053447.1 (hypothetical protein E6C27_scaffold428G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 228 bits (581), Expect = 7.67e-75
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MTHKVEGSSSSQRVELEAWNPFIVNGKKIPMTKENMKIVLRLLLEEKLRREIVGMVRKER 60
           MTHKVEGSSSSQRVELEAWNPFIVNGKKIPMTKENMKIVLRLLLEEKLRREIVGMVRKER
Sbjct: 1   MTHKVEGSSSSQRVELEAWNPFIVNGKKIPMTKENMKIVLRLLLEEKLRREIVGMVRKER 60

Query: 61  MDKEEKERKLRREEEDKKRIEEEVNEEEVKEEIREIDVSSLIVEIEFARWPRNPKEDRES 120
           MDKEEKERKLRREEEDKKRIEEEVNEEEVKEEIREIDVSSLIVEIEFARWPRNPKEDRES
Sbjct: 61  MDKEEKERKLRREEEDKKRIEEEVNEEEVKEEIREIDVSSLIVEIEFARWPRNPKEDRES 120

Query: 121 SNWDSQN 127
           SNWDSQN
Sbjct: 121 SNWDSQN 127

[Close]

BLAST of MELO3C018975.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UG34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001240 PE=4 SV=1)

HSP 1 Score: 228 bits (581), Expect = 3.71e-75
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MTHKVEGSSSSQRVELEAWNPFIVNGKKIPMTKENMKIVLRLLLEEKLRREIVGMVRKER 60
           MTHKVEGSSSSQRVELEAWNPFIVNGKKIPMTKENMKIVLRLLLEEKLRREIVGMVRKER
Sbjct: 1   MTHKVEGSSSSQRVELEAWNPFIVNGKKIPMTKENMKIVLRLLLEEKLRREIVGMVRKER 60

Query: 61  MDKEEKERKLRREEEDKKRIEEEVNEEEVKEEIREIDVSSLIVEIEFARWPRNPKEDRES 120
           MDKEEKERKLRREEEDKKRIEEEVNEEEVKEEIREIDVSSLIVEIEFARWPRNPKEDRES
Sbjct: 61  MDKEEKERKLRREEEDKKRIEEEVNEEEVKEEIREIDVSSLIVEIEFARWPRNPKEDRES 120

Query: 121 SNWDSQN 127
           SNWDSQN
Sbjct: 121 SNWDSQN 127

The following BLAST results are available for this feature:

BLAST of MELO3C018975.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053447.1	7.67e-75	100.00	hypothetical protein E6C27_scaffold428G001240 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C018975.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018975.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UG34	3.71e-75	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C018975.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C018975.jh1	MELO3C018975.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018975.jh1.t1.exon	MELO3C018975.jh1.t1.exon	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018975.jh1.t1.start_codon	MELO3C018975.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018975.jh1.t1.cds	MELO3C018975.jh1.t1.cds	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C018975.jh1.t1.stop_codon	MELO3C018975.jh1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C018975.jh1.t1	MELO3C018975.jh1.t1-protein	polypeptide