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MELO3C018021.jh1.t2 (mRNA) Melon (Harukei-3) v1.41
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.GGGCCATCAATTTAGGCGCCAATATAACCACCATTTTCCCGCCGGTAACTTCACCGACGTCAACATCTCTTCTTCCTCTCCCACTTAACCGTCACAAGCGGAACGCAGTCATTCGTTCGGAGAAAACAATGGCCAACCCCGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTCAAGACGGAGCCGGCAGAGTGGTCATGGGCGGACCAAGCCGCCAACGACGGACGATCAAAGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCGGGCGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAGTGGTACTCATCGGTGGAGGATGAAGTTGTCGTGGACGTGGAGGCAGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGGGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCGAGGCTGTCGGTCGTGCCGGTTGCGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGATTTGAAGGAGATGGAACTGAGGGCGGGCATGGGAGTGATTGAATTTGAATGCTCTCAAGGTGTTTGTGAATATTCTCAGGAGAATTTTAAGGGAATTGAATGCATAAACCGTATCTGTTTTGGAAATGTGGGAAGAAGAAGATCTAGAAAGGGAAAGGCTCAGTCAGGTATATATATATATCTATACATATTGTTTTTGTTGTCTGTTTAATGGTGGCTTATGAATTCTTGGGGAATCAAATTTTTGATCATCTAGTTTCTTTAGTTCTTCAACAATGGCTGAACCACATAGAGGTTTACATTTACTTCCCGATCTTTCTTTTGTATTTGTATATATTTCTTCTAATTGAACACAACTCAACTAGCATGCAATGTATTAGCAATCAGTTTCAAGTTCAAA GGGCCATCAATTTAGGCGCCAATATAACCACCATTTTCCCGCCGGTAACTTCACCGACGTCAACATCTCTTCTTCCTCTCCCACTTAACCGTCACAAGCGGAACGCAGTCATTCGTTCGGAGAAAACAATGGCCAACCCCGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTCAAGACGGAGCCGGCAGAGTGGTCATGGGCGGACCAAGCCGCCAACGACGGACGATCAAAGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCGGGCGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAGTGGTACTCATCGGTGGAGGATGAAGTTGTCGTGGACGTGGAGGCAGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGGGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCGAGGCTGTCGGTCGTGCCGGTTGCGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGATTTGAAGGAGATGGAACTGAGGGCGGGCATGGGAGTGATTGAATTTGAATGCTCTCAAGGTGTTTGTGAATATTCTCAGGAGAATTTTAAGGGAATTGAATGCATAAACCGTATCTGTTTTGGAAATGTGGGAAGAAGAAGATCTAGAAAGGGAAAGGCTCAGTCAGGTATATATATATATCTATACATATTGTTTTTGTTGTCTGTTTAATGGTGGCTTATGAATTCTTGGGGAATCAAATTTTTGATCATCTAGTTTCTTTAGTTCTTCAACAATGGCTGAACCACATAGAGGTTTACATTTACTTCCCGATCTTTCTTTTGTATTTGTATATATTTCTTCTAATTGAACACAACTCAACTAGCATGCAATGTATTAGCAATCAGTTTCAAGTTCAAA ATGGCCAACCCCGTCGCCGGAGACAAAAGGCAGTATTGGCTTCTCAAGACGGAGCCGGCAGAGTGGTCATGGGCGGACCAAGCCGCCAACGACGGACGATCAAAGTGGGACGGCGTTAAGAACAAGCAAGCTCAGAAGCATCTTAAGTCCATGAAACTCGGCGACCGCTGTTTCTTCTACCACTCGGGCGCCAAGGCCCGCCGTGTCGTGGGCGTGGTCGCGGTCGCAAGGGAGTGGTACTCATCGGTGGAGGATGAAGTTGTCGTGGACGTGGAGGCAGTTGGAGAGATGAGGGAACCGGTGGATTTGAAAGAGATGAAGAAGGGGATGGAAGGGATGAAGAATTTCGCTCTGTTTAGGCAACCGAGGCTGTCGGTCGTGCCGGTTGCGAAGGAGATTTGGGATAAAATCTGCGAATTGGGAGGCGGATTTGAAGGAGATGGAACTGAGGGCGGGCATGGGAGTGATTGA MANPVAGDKRQYWLLKTEPAEWSWADQAANDGRSKWDGVKNKQAQKHLKSMKLGDRCFFYHSGAKARRVVGVVAVAREWYSSVEDEVVVDVEAVGEMREPVDLKEMKKGMEGMKNFALFRQPRLSVVPVAKEIWDKICELGGGFEGDGTEGGHGSD Homology
BLAST of MELO3C018021.jh1.t2 vs. NCBI nr
Match: KAA0044320.1 (thymocyte nuclear protein 1 [Cucumis melo var. makuwa] >TYK29448.1 thymocyte nuclear protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 321 bits (823), Expect = 8.29e-111 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. NCBI nr
Match: XP_016901490.1 (PREDICTED: thymocyte nuclear protein 1 [Cucumis melo] >ADN33814.1 hypothetical protein [Cucumis melo subsp. melo]) HSP 1 Score: 321 bits (823), Expect = 3.98e-110 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. NCBI nr
Match: XP_004150262.2 (thymocyte nuclear protein 1 [Cucumis sativus] >KGN52742.1 hypothetical protein Csa_014551 [Cucumis sativus]) HSP 1 Score: 304 bits (778), Expect = 3.08e-103 Identity = 148/156 (94.87%), Postives = 151/156 (96.79%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. NCBI nr
Match: XP_038905606.1 (thymocyte nuclear protein 1 [Benincasa hispida]) HSP 1 Score: 302 bits (773), Expect = 3.63e-103 Identity = 145/156 (92.95%), Postives = 152/156 (97.44%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. NCBI nr
Match: XP_023530564.1 (thymocyte nuclear protein 1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 272 bits (696), Expect = 2.07e-91 Identity = 132/157 (84.08%), Postives = 144/157 (91.72%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q91YJ3 (Thymocyte nuclear protein 1 OS=Mus musculus OX=10090 GN=Thyn1 PE=1 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13 Identity = 57/164 (34.76%), Postives = 85/164 (51.83%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q9P016 (Thymocyte nuclear protein 1 OS=Homo sapiens OX=9606 GN=THYN1 PE=1 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12 Identity = 54/164 (32.93%), Postives = 83/164 (50.61%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q6P3E0 (Thymocyte nuclear protein 1 OS=Rattus norvegicus OX=10116 GN=Thyn1 PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12 Identity = 58/164 (35.37%), Postives = 82/164 (50.00%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q90679 (Thymocyte nuclear protein 1 OS=Gallus gallus OX=9031 GN=THYN1 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.1e-11 Identity = 54/164 (32.93%), Postives = 82/164 (50.00%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy Swiss-Prot
Match: Q6PFL8 (Thymocyte nuclear protein 1 OS=Danio rerio OX=7955 GN=thyn1 PE=2 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08 Identity = 48/163 (29.45%), Postives = 80/163 (49.08%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy TrEMBL
Match: A0A5D3E131 (Thymocyte nuclear protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00410 PE=4 SV=1) HSP 1 Score: 321 bits (823), Expect = 4.02e-111 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy TrEMBL
Match: E5GBH2 (EVE domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 321 bits (823), Expect = 1.93e-110 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy TrEMBL
Match: A0A1S4E0I6 (thymocyte nuclear protein 1 OS=Cucumis melo OX=3656 GN=LOC103494826 PE=4 SV=1) HSP 1 Score: 321 bits (823), Expect = 1.93e-110 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy TrEMBL
Match: A0A0A0KWC0 (EVE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000630 PE=4 SV=1) HSP 1 Score: 304 bits (778), Expect = 1.49e-103 Identity = 148/156 (94.87%), Postives = 151/156 (96.79%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. ExPASy TrEMBL
Match: A0A6J1JS35 (thymocyte nuclear protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111489276 PE=4 SV=1) HSP 1 Score: 269 bits (688), Expect = 1.66e-90 Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 0
BLAST of MELO3C018021.jh1.t2 vs. TAIR 10
Match: AT2G14660.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); Has 2761 Blast hits to 2761 proteins in 686 species: Archae - 5; Bacteria - 1143; Metazoa - 73; Fungi - 78; Plants - 42; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI BLink). ) HSP 1 Score: 200.7 bits (509), Expect = 8.8e-52 Identity = 104/156 (66.67%), Postives = 121/156 (77.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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