MELO3C017710.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C017710.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr07: 24171431 .. 24172010 (-)
Sequence length	580
RNA-Seq Expression	MELO3C017710.1
Synteny	MELO3C017710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAATTATACACAGCAGCTCCACAAATATCAAATGCCTCAATGTTCTATCTCAACAACCCATCAAAAGTTACAAGAAATGAAGAAAAGATTGAAATTCCAAGACATAAAACTACCGGAGAAGGTTTTGTCGACATTTCCCACCCCACCACAGACGCACATTGCCCAAGAGAAGTGAGAATAAAGTTCAAAAAGAGACAAAATTGGATAACATTCCGCAAAATTGGGCATAGTAAAGCGAGACCTGATGACGAATTGGACCCCAAAACGTACTTCTACAAGAGCGTTACGAACATGGGGAGACCATTTAACGTTGGCAGAAATCAAGGCATTGTGGAGAGAAACAAACAAAACAATGAGAGGAGAATCAGTGAAGTCACTCACCAGGAAACAGAGAAGGGGGGAAAGGAAAGAAACCCTAGAACAGAAAGTGCATGATGGACGAATGAGTGAGGAAATCTTGAAGCTTTGCGGCCGTGGAGGCCGGAGGTTGATGGGGTAAGAAGATCGCCGGAGGAAGCAGTTGATTGAACGGCGGGAAGAAGGGAAAGGTGAGAGTGAATGAGTGGTTCTGTTC

mRNA sequence

ATGAATGAATTATACACAGCAGCTCCACAAATATCAAATGCCTCAATGTTCTATCTCAACAACCCATCAAAAGTTACAAGAAATGAAGAAAAGATTGAAATTCCAAGACATAAAACTACCGGAGAAGGTTTTGTCGACATTTCCCACCCCACCACAGACGCACATTGCCCAAGAGAAGTGAGAATAAAGTTCAAAAAGAGACAAAATTGGATAACATTCCGCAAAATTGGGCATAGTAAAGCGAGACCTGATGACGAATTGGACCCCAAAACGTACTTCTACAAGAGCGTTACGAACATGGGGAGACCATTTAACGTTGGCAGAAATCAAGGCATTGTGGAGAGAAACAAACAAAACAATGAGAGGAGAATCAGTGAAGTCACTCACCAGGAAACAGAGAAGGGGGGAAAGGAAAGAAACCCTAGAACAGAAAGTGCATGATGGACGAATGAGTGAGGAAATCTTGAAGCTTTGCGGCCGTGGAGGCCGGAGGTTGATGGGGTAAGAAGATCGCCGGAGGAAGCAGTTGATTGAACGGCGGGAAGAAGGGAAAGGTGAGAGTGAATGAGTGGTTCTGTTC

Coding sequence (CDS)

ATGAATGAATTATACACAGCAGCTCCACAAATATCAAATGCCTCAATGTTCTATCTCAACAACCCATCAAAAGTTACAAGAAATGAAGAAAAGATTGAAATTCCAAGACATAAAACTACCGGAGAAGGTTTTGTCGACATTTCCCACCCCACCACAGACGCACATTGCCCAAGAGAAGTGAGAATAAAGTTCAAAAAGAGACAAAATTGGATAACATTCCGCAAAATTGGGCATAGTAAAGCGAGACCTGATGACGAATTGGACCCCAAAACGTACTTCTACAAGAGCGTTACGAACATGGGGAGACCATTTAACGTTGGCAGAAATCAAGGCATTGTGGAGAGAAACAAACAAAACAATGAGAGGAGAATCAGTGAAGTCACTCACCAGGAAACAGAGAAGGGGGGAAAGGAAAGAAACCCTAGAACAGAAAGTGCATGA

Protein sequence

MNELYTAAPQISNASMFYLNNPSKVTRNEEKIEIPRHKTTGEGFVDISHPTTDAHCPREVRIKFKKRQNWITFRKIGHSKARPDDELDPKTYFYKSVTNMGRPFNVGRNQGIVERNKQNNERRISEVTHQETEKGGKERNPRTESA

Homology

[Close]

BLAST of MELO3C017710.1 vs. NCBI nr
Match: KAA0044602.1 (hypothetical protein E6C27_scaffold46G003530 [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 8.3e-54
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 29  EEKIEIPRHKTTGEGFVDISHPTTDAHCPREVRIKFKKRQNWITFRKIGHSKARPDDELD 88
           +++++    K  GEGFVDISHPTTDAHCPREVRIKFKKRQNWITFRKIGHSKARPDDELD
Sbjct: 2   KKRLKFQDIKLPGEGFVDISHPTTDAHCPREVRIKFKKRQNWITFRKIGHSKARPDDELD 61

Query: 89  PKTYFYKSVTNMGRPFNVGRNQGIVERNKQNNERRISEVTHQETEKGGKERNPRTESA 147
           PKTYFYKSVTNMGRPFNVGRNQGIVERNKQNNERRISEVTHQETEKGGKERNPRTESA
Sbjct: 62  PKTYFYKSVTNMGRPFNVGRNQGIVERNKQNNERRISEVTHQETEKGGKERNPRTESA 119

[Close]

BLAST of MELO3C017710.1 vs. NCBI nr
Match: KGN53083.1 (hypothetical protein Csa_014843 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-16
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 16 MFYLNNPSKVTRNEEKIEIPRHKTTGEGFVD--ISHPTTDAHCPREVRIKFKKRQNWITF 75
          MFYLNNPSKVTRNEEKIEIPRHKTTG  F     SH         E +IK + + + I F
Sbjct: 1  MFYLNNPSKVTRNEEKIEIPRHKTTGRRFYQHFPSHNRRTLPKRNENKIKKETKLDNIPF 60

Query: 76 RKIGHSKARPDDELDPKT 92
          RKIGHSKARPD+ELDPKT
Sbjct: 61 RKIGHSKARPDNELDPKT 78

[Close]

BLAST of MELO3C017710.1 vs. ExPASy TrEMBL
Match: A0A5A7TMR9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003530 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.0e-54
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 29  EEKIEIPRHKTTGEGFVDISHPTTDAHCPREVRIKFKKRQNWITFRKIGHSKARPDDELD 88
           +++++    K  GEGFVDISHPTTDAHCPREVRIKFKKRQNWITFRKIGHSKARPDDELD
Sbjct: 2   KKRLKFQDIKLPGEGFVDISHPTTDAHCPREVRIKFKKRQNWITFRKIGHSKARPDDELD 61

Query: 89  PKTYFYKSVTNMGRPFNVGRNQGIVERNKQNNERRISEVTHQETEKGGKERNPRTESA 147
           PKTYFYKSVTNMGRPFNVGRNQGIVERNKQNNERRISEVTHQETEKGGKERNPRTESA
Sbjct: 62  PKTYFYKSVTNMGRPFNVGRNQGIVERNKQNNERRISEVTHQETEKGGKERNPRTESA 119

[Close]

BLAST of MELO3C017710.1 vs. ExPASy TrEMBL
Match: A0A0A0KU78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015730 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.3e-16
Identity = 51/78 (65.38%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 16 MFYLNNPSKVTRNEEKIEIPRHKTTGEGFVD--ISHPTTDAHCPREVRIKFKKRQNWITF 75
          MFYLNNPSKVTRNEEKIEIPRHKTTG  F     SH         E +IK + + + I F
Sbjct: 1  MFYLNNPSKVTRNEEKIEIPRHKTTGRRFYQHFPSHNRRTLPKRNENKIKKETKLDNIPF 60

Query: 76 RKIGHSKARPDDELDPKT 92
          RKIGHSKARPD+ELDPKT
Sbjct: 61 RKIGHSKARPDNELDPKT 78

The following BLAST results are available for this feature:

BLAST of MELO3C017710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044602.1	8.3e-54	90.68	hypothetical protein E6C27_scaffold46G003530 [Cucumis melo var. makuwa]	[more]
KGN53083.1	6.8e-16	65.38	hypothetical protein Csa_014843 [Cucumis sativus]	[more]

BLAST of MELO3C017710.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C017710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TMR9	4.0e-54	90.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KU78	3.3e-16	65.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015730 PE=4 SV=1	[more]

BLAST of MELO3C017710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..146

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C017710	MELO3C017710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C017710.1:exon:220198	MELO3C017710.1:exon:220198	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C017710.1:three_prime_utr	MELO3C017710.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C017710.1:cds	MELO3C017710.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C017710.1	MELO3C017710.1-protein	polypeptide