MELO3C014515.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C014515.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Aspartyl/glutamyl-tRNA (Asn/Gln) amidotransferase subunit B
Location	chr05: 1806061 .. 1808337 (+)
Sequence length	649
RNA-Seq Expression	MELO3C014515.1
Synteny	MELO3C014515.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATATATCATAAGGAAGCAAAGGTGAAATGGTCTTTTCGCGTTTCCCGTTTATTTCCAATTCGAACAGATAAAATTGCCACCGTGCGACGTCCGTTCACGTCACTTCGATACCGCCAATCCGGCTGCGAGCTACGACGAAGGTGAGTACAAAGTTATCTTTCTTTTTTCCGGCCGTCCTCCTCGGTTTGTTCTTTGGTTTTACTGTTTTATGGGTGTGCCCCAGTTTGTCGATTCTCTCTTTTCTTGTTGTCGTGAATATTCAGAATGGCGAAGAAAAGAATCCATACGCCCATTTACAAGTAACCACTGTTTGTGCTGTCTGCCAGAAAAATTCAAGTATTCAGTACCATTCTCTTTTTGGGTTCTGTTTTCTTTCTCATTCCAGTGAGAATCCAGCGTTTTCTTGGAGAATTTTACTCTATTCAACTGTTTTCTCGTGCTTTGTTTCTTCTATCTGGAAATTTAGCTGTTGTTTCAATTAATTAGATTCGGAAGGAATTTGATATGAATGGATTCAGAATTGTGTGCCAATTATAGTTCATATACATGTAGTGATGAGAATTTTGGCATTGGGTTAGGGTTTTTGAAAGTTAGATTTTTGTCGGTTGCCTTTGGGTCTGTGGTGTATGCTTGTAGGCTGTATGAATTCAAGTTATTTGTATCCTGTTTCTGTTTGGTTAATCACTCCCCTCCAACACACTTTTGTATTCTGAATCATCTGCCTTTTGTTGTGGTTCATAATTCATATCTGTCAAGTTATGGAATGGAAGGCAAGCTAGTTTTGAGGACTCCATCTGACTAGTTACATGTTTGTTTGACAATTGTTGAAATGTATTGCAGGCGTTGTCCTTTTCTTGATAATTGGCTATTTTCCATCTGAACATCTCTTGAATTGAGATGTACTTCAGTCTGCACACTTCATGAGTTTGTGTTATTTCTGTACTCCATTGTTTATGATTGCCTTTGTATGTTGGTAAAATTTTATTTTTACTTTTAGTCCAATCTTGTGAACATTAAATATCTTGCTGATGTAGTTGGTTTTGCTCTTAGTCTGCTATTTAATATTTTGCTCTTTCCAAAATCACCAACTTCAAATGTCAAGTCAAGTGTCAGGCCTGGGCTGATGTGAATTCTTCTTTTTCTTTATACACATACGTGCAAGCCTTTCATGTTATTTTGTTGTCATGCTACTAGTTGCTATTACTATGAATGACTGGCAAGAGAGTTTGGTTCCGTGCCTTGGCTTGAATGTTCGTCCATGCCAGTGCATGGATATATCATATATGTATGTGATAACTTCACGATTCTTTGCTCTTTCAGATGCGTGGTGTCATTTTTAAAGTAATTTTATTCTAACCATCATTAGTGTGCACAGCTTATCAAATTATTGAGAACCTTCATCATACGAATATGTAAAGAAACAATAATCATGAGTTGGCGTTATGGTAAATAGGGAATATGACATTGATAAAGGGCTAAAAAAGGTCATGGATTCAATTCATGGTGGCTAACTACCTATCTAGGATTTAATATCCTACAAATTTTGTTGACGTCCAAATGTTATAGGTTCAAGTGGATAGTCTCACGAGATTAATCGAGGCATGTGTAAGTTGGCATGGACATTCATGGTTCTTAAAAGATTGAAACATGTAAAAAAACCTTTGTTTTGAGAATCTATCGTCTTTGCTATAGGCTAATCTTTTACCTCATCTGTTATTTCCTAATTGTTTGCAGAGACTTTGCTTTGATATGAGTTTTGTGTTTTCAGCTTCTTTGGCTAACCCTACATGGGAAACAAACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCTGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAGCCATGTCTTACAAACTCGAAAGTGTATCATTGTGGACATCTATCCTCTATCTTCTTATAATGTTAGTTCAAAGACTCTCCAACTGTCATTTGTAGGTAATCCTGTTTATGTCAACCAGTTGTCCATTAGCAATTTCTGTTAACAGGAATTGTGGAATAAAATTCTATGGTGTTGCCAAACCATCACCTCAATTCGATATTTGTAATGTCATTATTACTTCACTTTAGTTGAAATTTACCATTTTCTTTTTTTA

mRNA sequence

AAAATATATCATAAGGAAGCAAAGGTGAAATGGTCTTTTCGCGTTTCCCGTTTATTTCCAATTCGAACAGATAAAATTGCCACCGTGCGACGTCCGTTCACGTCACTTCGATACCGCCAATCCGGCTGCGAGCTACGACGAAGCTTCTTTGGCTAACCCTACATGGGAAACAAACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCTGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAGCCATGTCTTACAAACTCGAAAGTGTATCATTGTGGACATCTATCCTCTATCTTCTTATAATGTTAGTTCAAAGACTCTCCAACTGTCATTTGTAGGTAATCCTGTTTATGTCAACCAGTTGTCCATTAGCAATTTCTGTTAACAGGAATTGTGGAATAAAATTCTATGGTGTTGCCAAACCATCACCTCAATTCGATATTTGTAATGTCATTATTACTTCACTTTAGTTGAAATTTACCATTTTCTTTTTTTA

Coding sequence (CDS)

ATGGGAAACAAACCCGTGAAGCAACCACAGGAAGAAGTTTTCTTGAAGATAGTACCTCCTTTGGACCAAACATATGTTAGATGGCTAGCTCGTGATCTCGAGAGGATTCATGGCTTCACCCTGAGAAATCCTCGTGCCGTGAAGCCTCCCGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGCTTAGATGATCCAGATCTCGCACGTTTACTCAAATAG

Protein sequence

MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLARLLK

Homology

[Close]

BLAST of MELO3C014515.1 vs. NCBI nr
Match: XP_016900705.1 (PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >XP_016900706.1 PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >TYJ96066.1 uncharacterized protein E5676_scaffold182G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 4.4e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515.1 vs. NCBI nr
Match: KAA0061729.1 (uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 163.7 bits (413), Expect = 6.3e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGN+PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFT RNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515.1 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MGNKPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVKQ +   EE+FLKIVPPLDQ YVRWLARDLERIHGFT RNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNGWLDVSLDDPDLA L K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]

BLAST of MELO3C014515.1 vs. NCBI nr
Match: CBI28268.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1   MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
           MGNKPVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFT +NPRAVKPPDHYIE+MRLN
Sbjct: 105 MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 164

Query: 61  GWLDVSLDDPDLARLLK 78
           GWLDV+LDDPDLA L K
Sbjct: 165 GWLDVNLDDPDLAHLFK 181

[Close]

BLAST of MELO3C014515.1 vs. NCBI nr
Match: XP_038901668.1 (uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901671.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901672.1 uncharacterized protein LOC120088440 [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MGNKPVKQPQE---EVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGN+ VKQPQE   E+FLKIVPPLDQ Y+RWLARDLERIHGFT RNPRAVKPPDHYIEFM
Sbjct: 1  MGNRAVKQPQEQRGEIFLKIVPPLDQAYLRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNGWLDVSLDDPDLA L K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]

BLAST of MELO3C014515.1 vs. ExPASy TrEMBL
Match: A0A1S4DYB2 (uncharacterized protein LOC103491432 OS=Cucumis melo OX=3656 GN=LOC103491432 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515.1 vs. ExPASy TrEMBL
Match: A0A5D3BAZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00250 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.1e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515.1 vs. ExPASy TrEMBL
Match: A0A5A7V7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001040 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-37
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGN+PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFT RNPRAVKPPDHYIEFMRLN
Sbjct: 1  MGNRPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDVSLDDPDLARLLK
Sbjct: 61 GWLDVSLDDPDLARLLK 77

[Close]

BLAST of MELO3C014515.1 vs. ExPASy TrEMBL
Match: A0A6J1DJ99 (uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020571 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.0e-33
Identity = 70/80 (87.50%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MGNKPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVKQ +   EE+FLKIVPPLDQ YVRWLARDLERIHGFT RNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNGWLDVSLDDPDLA L K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]

BLAST of MELO3C014515.1 vs. ExPASy TrEMBL
Match: A0A438DCX1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_085320 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  MGNKPVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLN 60
          MGNKPVK+ +EE+FLKIVPPLD+ YVRWLARDLERIHGFT +NPRAVKPPDHYIE+MRLN
Sbjct: 1  MGNKPVKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYMRLN 60

Query: 61 GWLDVSLDDPDLARLLK 78
          GWLDV+LDDPDLA L K
Sbjct: 61 GWLDVNLDDPDLAHLFK 77

[Close]

BLAST of MELO3C014515.1 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-25
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MGNK--PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLR-NPRAVKPPDHYIEFM 60
          MGNK   VK+ +EE+ LKIVPPLD+ ++RWLARDL+R+HGF  + N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

[Close]

BLAST of MELO3C014515.1 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-25
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1  MGNK--PVKQPQEEVFLKIVPPLDQTYVRWLARDLERIHGFTLR-NPRAVKPPDHYIEFM 60
          MGNK   VK+ +EE+ LKIVPPLD+ ++RWLARDL+R+HGF  + N RA+ PPD YIEFM
Sbjct: 1  MGNKATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEFM 60

Query: 61 RLNGWLDVSLDDPDLARLLK 78
          RLNG LDV LDDPDLA L K
Sbjct: 61 RLNGSLDVDLDDPDLAHLFK 80

The following BLAST results are available for this feature:

BLAST of MELO3C014515.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900705.1	4.4e-38	100.00	PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >XP_016900706.1 P...	[more]
KAA0061729.1	6.3e-37	97.40	uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa]	[more]
XP_022152955.1	1.2e-32	87.50	uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha...	[more]
CBI28268.3	2.7e-32	84.42	unnamed protein product, partial [Vitis vinifera]	[more]
XP_038901668.1	2.7e-32	86.25	uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 unchara...	[more]

BLAST of MELO3C014515.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C014515.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DYB2	2.1e-38	100.00	uncharacterized protein LOC103491432 OS=Cucumis melo OX=3656 GN=LOC103491432 PE=...	[more]
A0A5D3BAZ5	2.1e-38	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V7T4	3.1e-37	97.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1DJ99	6.0e-33	87.50	uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A438DCX1	1.3e-32	84.42	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_085320 PE=4 SV=1	[more]

BLAST of MELO3C014515.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22210.1	1.6e-25	67.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G22210.2	1.6e-25	67.50	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C014515	MELO3C014515	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C014515.1:exon:130076	MELO3C014515.1:exon:130076	exon
MELO3C014515.1:exon:130077	MELO3C014515.1:exon:130077	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C014515.1:five_prime_utr	MELO3C014515.1:five_prime_utr	five_prime_UTR
MELO3C014515.1:five_prime_utr	MELO3C014515.1:five_prime_utr_2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C014515.1:cds	MELO3C014515.1:cds	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C014515.1:three_prime_utr	MELO3C014515.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C014515.1	MELO3C014515.1-protein	polypeptide