MELO3C009464.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C009464.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr04: 30723564 .. 30723908 (-)
Sequence length	345
RNA-Seq Expression	MELO3C009464.1
Synteny	MELO3C009464.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAGGCGTAGTACCTCCGGTGGAAATCGAAGAAGACGATGACCTCTTCGAGATCGATCTCGAGGCCGTCAACAGCATTACTTCACCGCCAAATTTCTCTGATGATCCTTGCGGTTTCTTCACAACTGCCGGTGGTGCCACGCTCCTCGCCAATTGTCTGTTGCCGATCACCGACGTGTCTAATGCCGTTCCGATAGGTGATTCCAACGAAGGCGAGATATTTTTGTTCGCGATGCCATCGGAGCCGACACACCTAGAGAAGGCTCTTCGGTTACCGTTGGGTTTGGGGCTTCATCGAGCTTTGATTGATTGTTTGGAGATGAAGATAACTAGCCGATGA

mRNA sequence

ATGGCCTCAGGCGTAGTACCTCCGGTGGAAATCGAAGAAGACGATGACCTCTTCGAGATCGATCTCGAGGCCGTCAACAGCATTACTTCACCGCCAAATTTCTCTGATGATCCTTGCGGTTTCTTCACAACTGCCGGTGGTGCCACGCTCCTCGCCAATTGTCTGTTGCCGATCACCGACGTGTCTAATGCCGTTCCGATAGGTGATTCCAACGAAGGCGAGATATTTTTGTTCGCGATGCCATCGGAGCCGACACACCTAGAGAAGGCTCTTCGGTTACCGTTGGGTTTGGGGCTTCATCGAGCTTTGATTGATTGTTTGGAGATGAAGATAACTAGCCGATGA

Coding sequence (CDS)

ATGGCCTCAGGCGTAGTACCTCCGGTGGAAATCGAAGAAGACGATGACCTCTTCGAGATCGATCTCGAGGCCGTCAACAGCATTACTTCACCGCCAAATTTCTCTGATGATCCTTGCGGTTTCTTCACAACTGCCGGTGGTGCCACGCTCCTCGCCAATTGTCTGTTGCCGATCACCGACGTGTCTAATGCCGTTCCGATAGGTGATTCCAACGAAGGCGAGATATTTTTGTTCGCGATGCCATCGGAGCCGACACACCTAGAGAAGGCTCTTCGGTTACCGTTGGGTTTGGGGCTTCATCGAGCTTTGATTGATTGTTTGGAGATGAAGATAACTAGCCGATGA

Protein sequence

MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITDVSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR

Homology

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BLAST of MELO3C009464.1 vs. NCBI nr
Match: XP_008442832.1 (PREDICTED: uncharacterized protein LOC103486601 [Cucumis melo] >KAA0043891.1 uncharacterized protein E6C27_scaffold236G002270 [Cucumis melo var. makuwa] >TYK25246.1 uncharacterized protein E5676_scaffold352G003790 [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 1.6e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 115
           VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 114

[Close]

BLAST of MELO3C009464.1 vs. NCBI nr
Match: KGN59122.1 (hypothetical protein Csa_001117 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MASG + P+EIEEDDDLFEIDLEAVNSI SPPNFSDD CGFFTTAG  TLLANCLLPITD
Sbjct: 1   MASG-IDPLEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGDTTLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 115
           VS+AVP+GDSNE EIFLFAMPSEPTHLEKAL+LPLG  LHRALIDCLEMKITS+
Sbjct: 61  VSSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFELHRALIDCLEMKITSQ 113

[Close]

BLAST of MELO3C009464.1 vs. NCBI nr
Match: XP_038906322.1 (uncharacterized protein LOC120092165 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 2.0e-34
Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDL+ VN+I SP + SDD  GFF  AGG TLLANCLLPITD
Sbjct: 1   MASAGV-PVEIEEDDELFEIDLDTVNNIISPSHSSDDTYGFFRAAGGTTLLANCLLPITD 60

Query: 61  VSNAVPIGDSNE-GEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKIT 113
           VSNA+P+GDSN+  E+ LFAMP +PTHLE  L+L LG GL RALIDCLEMKIT
Sbjct: 61  VSNAIPMGDSNKCSEMSLFAMPPKPTHLETVLQLLLGFGLRRALIDCLEMKIT 112

[Close]

BLAST of MELO3C009464.1 vs. NCBI nr
Match: XP_022935370.1 (uncharacterized protein LOC111442274 [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 9.1e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSI SP +F +D  GFFT  GGA LLANCLLPI+D
Sbjct: 16  MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 75

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA +LPLG GL +ALI+  EMK++S
Sbjct: 76  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 127

[Close]

BLAST of MELO3C009464.1 vs. NCBI nr
Match: XP_023529132.1 (uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 hypothetical protein SDJN03_20692, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017447.1 hypothetical protein SDJN02_19312, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 9.1e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSI SP +F +D  GFFT  GGA LLANCLLPI+D
Sbjct: 1   MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA +LPLG GL +ALI+  EMK++S
Sbjct: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 112

[Close]

BLAST of MELO3C009464.1 vs. ExPASy TrEMBL
Match: A0A5A7TQP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003790 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.9e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 115
           VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 114

[Close]

BLAST of MELO3C009464.1 vs. ExPASy TrEMBL
Match: A0A1S3B7E8 (uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.9e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 115
           VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 114

[Close]

BLAST of MELO3C009464.1 vs. ExPASy TrEMBL
Match: A0A0A0LEJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MASG + P+EIEEDDDLFEIDLEAVNSI SPPNFSDD CGFFTTAG  TLLANCLLPITD
Sbjct: 1   MASG-IDPLEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGDTTLLANCLLPITD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITSR 115
           VS+AVP+GDSNE EIFLFAMPSEPTHLEKAL+LPLG  LHRALIDCLEMKITS+
Sbjct: 61  VSSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFELHRALIDCLEMKITSQ 113

[Close]

BLAST of MELO3C009464.1 vs. ExPASy TrEMBL
Match: A0A6J1FAF9 (uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC111442274 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.4e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSI SP +F +D  GFFT  GGA LLANCLLPI+D
Sbjct: 16  MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 75

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA +LPLG GL +ALI+  EMK++S
Sbjct: 76  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 127

[Close]

BLAST of MELO3C009464.1 vs. ExPASy TrEMBL
Match: A0A6J1IYI1 (uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.3e-31
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSI SP +FS+D   FFT  GGA LLANCLLPI+D
Sbjct: 1   MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFSEDTYCFFTATGGAALLANCLLPISD 60

Query: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITS 114
           +SNAVP+ DS + E+F FA P EPT LEKA +LPLG GL +ALI+  EMK++S
Sbjct: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 112

[Close]

BLAST of MELO3C009464.1 vs. TAIR 10
Match: AT2G36295.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 4.8e-07
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 10 EIEEDDDLFEIDLEAV-NSITSPPNFSDDPCGFFTTAGGATLLANCLLPITDVSNAVP 67
          E + +DDLFEI+LEAV ++ TSPP      C       G+ LLANCLLP  ++SNAVP
Sbjct: 32 EEDGEDDLFEINLEAVSDTATSPPY----DCQRLPARTGSVLLANCLLPAAEISNAVP 85

The following BLAST results are available for this feature:

BLAST of MELO3C009464.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442832.1	1.6e-57	100.00	PREDICTED: uncharacterized protein LOC103486601 [Cucumis melo] >KAA0043891.1 unc...	[more]
KGN59122.1	2.6e-47	86.84	hypothetical protein Csa_001117 [Cucumis sativus]	[more]
XP_038906322.1	2.0e-34	72.57	uncharacterized protein LOC120092165 [Benincasa hispida]	[more]
XP_022935370.1	9.1e-32	68.14	uncharacterized protein LOC111442274 [Cucurbita moschata]	[more]
XP_023529132.1	9.1e-32	68.14	uncharacterized protein LOC111791865 [Cucurbita pepo subsp. pepo] >KAG6580690.1 ...	[more]

BLAST of MELO3C009464.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C009464.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQP6	7.9e-58	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7E8	7.9e-58	100.00	uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=...	[more]
A0A0A0LEJ9	1.3e-47	86.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1	[more]
A0A6J1FAF9	4.4e-32	68.14	uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A6J1IYI1	1.3e-31	68.14	uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795...	[more]

BLAST of MELO3C009464.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36295.1	4.8e-07	51.72	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C009464	MELO3C009464	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009464.1:exon:125498	MELO3C009464.1:exon:125498	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009464.1:cds	MELO3C009464.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C009464.1	MELO3C009464.1-protein	polypeptide