MELO3C009315.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C009315.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S23
Location	chr04: 31700212 .. 31701928 (+)
Sequence length	1115
RNA-Seq Expression	MELO3C009315.1
Synteny	MELO3C009315.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATTATCAAGTTTTCGTTGTTGGCAGTCCTTTCTTGAAGACTAGGGTTTTGGTGCAGCTCCTCCCTCTCAACTTTCGAAGCCCTCGCCGAAACCGTTCTCTCTGCAAACATGGGGTGAGATATTTATCCTAACTTCCACGTAAAGGAAAGGGTAGAAGGAGGGAATGATTCTTAGAATTTTTTCCCTCATTTTAGTTTAACTGTCCTAAGTATTCATCTAGTTTGCAATTACCAATAGATTTCTCTAATGTACTAGTTTTTGGATGGTTTTAGAACTCTGTAATGGTGAATAAGGTTTCTAGATGAATTGGATTGTGGTTTTTTTTAATCTGTTTTTTTTTTTATTGCTTTTGATTGATTAATGGTTGTTGTTATTACTTAATCCAAAACAGGAAAACAAGAGGTATGGGAGCTGGGCGCAAGCTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAAGCTTACAAGAAATCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCCGGTTCTTCTCATGCCAAAGGCATCGTCTTGGAAAAGATGTAAGATTGCAAGCAAACTGTTTTCTCCTTCAGATTTCAAGCTTAGCTTTTGTTATTTCGGATTTTTTTTTTCAATTGGGATTTGCAAGCATAAATTAAAATGTGTAATTTTGTCATAATAAATTAAGTCGAACCATGTATGTGAGTCACCTGATTTATTTTAGTGTTGGTAAATTATGTTTTAGGAGTTATTTTGAAAGGGTTAAGAATAACTTTTTTCAAGTTCAAAAATCACTCTTAAATATGTGGAAATCATGTGAAATCAATTTATTGTTTAATATTAGACTTTCAAGTCATCAAAATTGATTTCGATTGATTATTAACATGTTTCAAAATTATTTTAGCTGTTTTAGTATCACTCTCAAACATGGCTTTACCCAACATTACAAGTAATTGTCACTCAACTTGATTTAATTTTGTTAGTAACTTCAGAATTTATTGAGTTCTAAACTGCATTCTGAGTTTTTCTTTGCCATGTTTGAATGTTTTGTATCTAAATGGGCAATTGCTGATCTGATTTCAGAGGTATTGAGGCTAAGCAGCCAAATTCTGCCATTAGAAAGTGTGCCAGGGTTCAACTCATCAAAAATGGAAAGAAGATTGCCGCATTCGTGCCCAATGATGGTTGCTTGAACTACATTGAAGAAAATGTAAGTTGGCTACCCCCCCCTCCTCTTCTGCAAAATAATACGAGGGAATTTGAAACTGATATGAAAACTATGATTGCAGGACGAAGTGTTGATTGCCGGATTTGGTCGTAAAGGACATGCCGTCGGAGATATTCCTGGTGTTCGATTCAAGGTTGTGAAGGTGTCAGGTGTGTCTCTCCTCGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAAGTTTGCTTGGCAGAGTTTATCATCTTCTTACAGTTTTCTATCGATAATTTTAGAGTATTTTTGAGTTCTTGATTATTGGGTTGTTTTGGACTATATGTAGTTATTGCCTCCCTCCTCGCTGTCTTATTTTTGAAATCGTTTGATCGAGTTCCTTCCATTTTGATCTGAAAACTTTGTCTTGTTTATTAAGAGATATCAACAACCATGTTTTTGAACGAGTTCTTTCATAGTACTTTCATTCCCAGGCTAGAAGTACTCTTTTAAGAAGTTATAATTTGATTTAGGCGGATGCAGAA

mRNA sequence

ATATATTATCAAGTTTTCGTTGTTGGCAGTCCTTTCTTGAAGACTAGGGTTTTGGTGCAGCTCCTCCCTCTCAACTTTCGAAGCCCTCGCCGAAACCGTTCTCTCTGCAAACATGGGGTGAGATATTTATCCTAACTTCCACGTAAAGGAAAGGGTAGAAGGAGGGAATGATTCTTAGAATTTTTTCCCTCATTTTAGTTTAACTGTCCTAAGTATTCATCTAGTTTGCAATTACCAATAGATTTCTCTAATGTACTAGTTTTTGGATGGTTTTAGAACTCTGTAATGGTGAATAAGGTTTCTAGATGAATTGGATTGTGGTTTTTTTTAATCTGTTTTTTTTTTTATTGCTTTTGATTGATTAATGGTTGTTGTTATTACTTAATCCAAAACAGGAAAACAAGAGGTATGGGAGCTGGGCGCAAGCTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAAGCTTACAAGAAATCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCCGGTTCTTCTCATGCCAAAGGCATCGTCTTGGAAAAGATAGGTATTGAGGCTAAGCAGCCAAATTCTGCCATTAGAAAGTGTGCCAGGGTTCAACTCATCAAAAATGGAAAGAAGATTGCCGCATTCGTGCCCAATGATGGTTGCTTGAACTACATTGAAGAAAATGACGAAGTGTTGATTGCCGGATTTGGTCGTAAAGGACATGCCGTCGGAGATATTCCTGGTGTTCGATTCAAGGTTGTGAAGGTGTCAGGTGTGTCTCTCCTCGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAAGTTTGCTTGGCAGAGTTTATCATCTTCTTACAGTTTTCTATCGATAATTTTAGAGTATTTTTGAGTTCTTGATTATTGGGTTGTTTTGGACTATATGTAGTTATTGCCTCCCTCCTCGCTGTCTTATTTTTGAAATCGTTTGATCGAGTTCCTTCCATTTTGATCTGAAAACTTTGTCTTGTTTATTAAGAGATATCAACAACCATGTTTTTGAACGAGTTCTTTCATAGTACTTTCATTCCCAGGCTAGAAGTACTCTTTTAAGAAGTTATAATTTGATTTAGGCGGATGCAGAA

Coding sequence (CDS)

ATGGGAGCTGGGCGCAAGCTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAAGCTTACAAGAAATCTCACCTTGGCAATGAATGGAAGAAGCCATTTGCCGGTTCTTCTCATGCCAAAGGCATCGTCTTGGAAAAGATAGGTATTGAGGCTAAGCAGCCAAATTCTGCCATTAGAAAGTGTGCCAGGGTTCAACTCATCAAAAATGGAAAGAAGATTGCCGCATTCGTGCCCAATGATGGTTGCTTGAACTACATTGAAGAAAATGACGAAGTGTTGATTGCCGGATTTGGTCGTAAAGGACATGCCGTCGGAGATATTCCTGGTGTTCGATTCAAGGTTGTGAAGGTGTCAGGTGTGTCTCTCCTCGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA

Protein sequence

MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Homology

[Close]

BLAST of MELO3C009315.1 vs. NCBI nr
Match: KAG6596454.1 (Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 612 MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 671

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 672 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 731

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 732 VSLLALFKEKKEKPRS 747

[Close]

BLAST of MELO3C009315.1 vs. NCBI nr
Match: KAA0035301.1 (Nucleic acid-binding, OB-fold [Cucumis melo var. makuwa] >KZV35083.1 hypothetical protein F511_04388 [Dorcoceras hygrometricum] >CAA3000696.1 40S ribosomal S23 [Olea europaea subsp. europaea] >GFY85390.1 ribosomal protein S12/S23 family protein [Actinidia rufa] >KAA0044033.1 Nucleic acid-binding, OB-fold [Cucumis melo var. makuwa])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 121 VSLLALFKEKKEKPRS 136

[Close]

BLAST of MELO3C009315.1 vs. NCBI nr
Match: XP_004137806.1 (40S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protein S23 [Cucumis sativus] >XP_004149560.1 40S ribosomal protein S23 [Cucumis sativus] >XP_008442648.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463567.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_008463898.1 PREDICTED: 40S ribosomal protein S23 [Cucumis melo] >XP_010244979.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_010253521.1 PREDICTED: 40S ribosomal protein S23 [Nelumbo nucifera] >XP_011077380.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094704.1 40S ribosomal protein S23 [Sesamum indicum] >XP_011094750.1 40S ribosomal protein S23 [Sesamum indicum] >XP_015871640.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_015874365.1 40S ribosomal protein S23 [Ziziphus jujuba] >XP_019159119.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_019199308.1 PREDICTED: 40S ribosomal protein S23 [Ipomoea nil] >XP_022146292.1 40S ribosomal protein S23 [Momordica charantia] >XP_022846964.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022860588.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022868249.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022893103.1 40S ribosomal protein S23 [Olea europaea var. sylvestris] >XP_022923344.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022944535.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022951215.1 40S ribosomal protein S23-like [Cucurbita moschata] >XP_022985542.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_022990481.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023005893.1 40S ribosomal protein S23-like [Cucurbita maxima] >XP_023512024.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_023538819.1 40S ribosomal protein S23-like [Cucurbita pepo subsp. pepo] >XP_028112674.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_028118234.1 40S ribosomal protein S23-like [Camellia sinensis] >XP_031111005.1 40S ribosomal protein S23 [Ipomoea triloba] >XP_038890679.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038900543.1 40S ribosomal protein S23 [Benincasa hispida] >XP_038903484.1 40S ribosomal protein S23 [Benincasa hispida] >KAG6602334.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010604.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG8376519.1 hypothetical protein BUALT_Bualt09G0071800 [Buddleja alternifolia] >PIN05081.1 40S ribosomal protein S23 [Handroanthus impetiginosus] >CAA3000695.1 40S ribosomal S23 [Olea europaea subsp. europaea] >GFZ11112.1 ribosomal protein S12/S23 family protein [Actinidia rufa])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. NCBI nr
Match: KAF5953829.1 (hypothetical protein HYC85_006685 [Camellia sinensis] >THG01484.1 hypothetical protein TEA_010314 [Camellia sinensis var. sinensis])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 17  MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 76

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 77  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 136

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 137 VSLLALFKEKKEKPRS 152

[Close]

BLAST of MELO3C009315.1 vs. NCBI nr
Match: KZV51763.1 (hypothetical protein F511_11451, partial [Dorcoceras hygrometricum] >PSR93034.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis] >PSR98196.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis] >PSS23725.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis] >PSS35002.1 40S ribosomal protein S23, partial [Actinidia chinensis var. chinensis])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 5   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 64

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 65  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 124

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 125 VSLLALFKEKKEKPRS 140

[Close]

BLAST of MELO3C009315.1 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 5.5e-71
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.2e-70
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 131/136 (96.32%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 250.8 bits (639), Expect = 9.1e-66
Identity = 128/136 (94.12%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-59
Identity = 111/133 (83.46%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 5   RKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCA 64
           RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC 
Sbjct: 11  RKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV 70

Query: 65  RVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSL 124
           RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL
Sbjct: 71  RVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSL 130

Query: 125 LALFKEKKEKPRS 137
           LAL+K+KKE+PRS
Sbjct: 131 LALYKQKKERPRS 143

[Close]

BLAST of MELO3C009315.1 vs. ExPASy TrEMBL
Match: A0A6J1JN26 (40S ribosomal protein S23-like OS=Cucurbita maxima OX=3661 GN=LOC111487330 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy TrEMBL
Match: A0A2G9GIG2 (40S ribosomal protein S23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08850 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy TrEMBL
Match: A0A6I9T358 (40S ribosomal protein S23 OS=Sesamum indicum OX=4182 GN=LOC105161405 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy TrEMBL
Match: A0A0A0KCM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496500 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. ExPASy TrEMBL
Match: A0A1S3B6Y1 (40S ribosomal protein S23 OS=Cucumis melo OX=3656 GN=LOC103486454 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-69
Identity = 131/136 (96.32%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 250.8 bits (639), Expect = 6.5e-67
Identity = 128/136 (94.12%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 137
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

[Close]

BLAST of MELO3C009315.1 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 28  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 87
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 88  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 118
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of MELO3C009315.1 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 28  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 87
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 88  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 118
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]

BLAST of MELO3C009315.1 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 28  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 87
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 88  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 118
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:

BLAST of MELO3C009315.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596454.1	1.7e-69	100.00	Interactor of constitutive active ROPs 2, chloroplastic, partial [Cucurbita argy...	[more]
KAA0035301.1	1.7e-69	100.00	Nucleic acid-binding, OB-fold [Cucumis melo var. makuwa] >KZV35083.1 hypothetica...	[more]
XP_004137806.1	1.7e-69	100.00	40S ribosomal protein S23 [Cucumis sativus] >XP_004143809.1 40S ribosomal protei...	[more]
KAF5953829.1	1.7e-69	100.00	hypothetical protein HYC85_006685 [Camellia sinensis] >THG01484.1 hypothetical p...	[more]
KZV51763.1	1.7e-69	100.00	hypothetical protein F511_11451, partial [Dorcoceras hygrometricum] >PSR93034.1 ...	[more]

BLAST of MELO3C009315.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46297	5.5e-71	97.79	40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1	[more]
Q9M5Z9	1.2e-70	97.79	40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1	[more]
P49201	2.0e-68	96.32	40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2	[more]
Q9SF35	9.1e-66	94.12	40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2	[more]
Q9GRJ3	4.8e-59	83.46	40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1	[more]

BLAST of MELO3C009315.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN26	8.3e-70	100.00	40S ribosomal protein S23-like OS=Cucurbita maxima OX=3661 GN=LOC111487330 PE=3 ...	[more]
A0A2G9GIG2	8.3e-70	100.00	40S ribosomal protein S23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08850...	[more]
A0A6I9T358	8.3e-70	100.00	40S ribosomal protein S23 OS=Sesamum indicum OX=4182 GN=LOC105161405 PE=3 SV=1	[more]
A0A0A0KCM2	8.3e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496500 PE=3 SV=1	[more]
A0A1S3B6Y1	8.3e-70	100.00	40S ribosomal protein S23 OS=Cucumis melo OX=3656 GN=LOC103486454 PE=3 SV=1	[more]

BLAST of MELO3C009315.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02960.1	1.4e-69	96.32	Ribosomal protein S12/S23 family protein	[more]
AT3G09680.1	6.5e-67	94.12	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	3.7e-06	36.26	ribosomal protein S12A	[more]
ATCG01230.1	3.7e-06	36.26	ribosomal protein S12B	[more]
ATCG00905.1	3.7e-06	36.26	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 19..136 e-value: 3.3E-47 score: 160.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR11652:SF59	BNACNNG03140D PROTEIN	coord: 1..136
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	TIGRFAM	TIGR00982	TIGR00982	coord: 3..135 e-value: 1.1E-52 score: 175.4
IPR005680	Ribosomal protein S23, eukaryotic/archaeal	CDD	cd03367	Ribosomal_S23	coord: 20..133 e-value: 2.55977E-74 score: 214.826
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 25..135 e-value: 5.7E-50 score: 167.7
IPR006032	Ribosomal protein S12/S23	PIRSF	PIRSF002133	RPS12p_RPS12a_RPS23e_RPS12o	coord: 10..136 e-value: 4.1E-33 score: 111.5
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 1..136
IPR006032	Ribosomal protein S12/S23	PROSITE	PS00055	RIBOSOMAL_S12	coord: 53..60
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 14..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C009315	MELO3C009315	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009315.1:exon:126441	MELO3C009315.1:exon:126441	exon
MELO3C009315.1:exon:126442	MELO3C009315.1:exon:126442	exon
MELO3C009315.1:exon:126443	MELO3C009315.1:exon:126443	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009315.1:five_prime_utr	MELO3C009315.1:five_prime_utr	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009315.1:cds	MELO3C009315.1:cds	CDS
MELO3C009315.1:cds	MELO3C009315.1:cds_2	CDS
MELO3C009315.1:cds	MELO3C009315.1:cds_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C009315.1:three_prime_utr	MELO3C009315.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C009315.1	MELO3C009315.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome