MELO3C006017.jh1.t1 (mRNA) Melon (Harukei-3) v1.41
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDSstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.TAACCCGAGTTCAAATCTCGGTGGAACCTTCTTTTTCATTTTTCGCCCGTACAGATAATTTCGTCAACCGCCGTGGCCGTCCAAAGCCGAAGCCAATGGAATTTCCTCTACAAATTAAAACACTTCCGATCGGAGACGGCTATTCACAAACTGATTGTTCTTCACCAAGAGACGCCCGGCGGCGTTCCCCTTCCAAGTTCTTCTTTTCTGATACTTTCAGTTTTGTTTCTTAGAAAGATGAACGACGAGACCCGACGGAAAATCGAGGAAAACGTGATTGAGGTACTGAAGCAATCGAACATTGAAGACACGACGGAGTTTAAAGTTAGAAGCCAGGTCGAAGAACGGATTGGAATCGATCTTTCTAATAAACAATGCAAGTTGCTGGTGAGGAACGTGGTAGAGAGCTTTTTACTTTCAATGTCGGAGCGGGTGTGTATGGGGAAAGAGGATGAGCCTGGACCTAGTGTTCGTTACGAGAATAGAGCGGTGGAGCAGAAGATAATCCCGAAGAAGGAGTTCAACGATGATGGCGACCTTCTGATTTGCCGGGTAAAGTAAAATCATACCCTTCTTGATTCTTATGGTGTAGTGATTTTGAAAGAAATGAGAAAGATTAGGGTTTTGTGAACTTAGTTCTATGAAATATGTGGTTTTATAGAAAGCTTCCGAATTAGGTTCTTCTGTTGCTAAGCAATTGAAAAGTTCTTTATTTTTCTGTGGTTAGATTGTTGTGTATTCTTTGTTCATAGATCATTCTGTACCAAAAAAGATTGTTATGTTTATCTGTTGTTTTCTATCTGTTGTTTATGTTTCTATGGCGATTGTGTACCAAAATGTTAGATTGTAGAAGAAATTCAGGTGAGCATTCTCTGTCATTAATCATTTGTGTTTTATGAGTGTAGAAATTGATCGTTTAGATAAGAACTCAACAACCTTGCTCTTCCTGCTCTCACCCGGACACACATAACACTTCTGCTGTTAAAGTTGTTAATCCCTTTATACTCTATCAGTAATTCTTTTCACTTATTAGTTAAGGATTTTTTTGGTTTGTTTCAGCTATCTAACAACAGGAGTGTGACAATTCATAAATTTAAAGGGGAACGTATGGTATCAATTAGGCAGTATTATGCAAAAGATGGAAAACAGCTTCCAACTCTAAAAGGTGGGCATTATTCATTGGTCTCTTCCTTTTCTCTTATGGTGAATCTTTTCTTTTATTATGTCAGTTCTGTTAACTCCACACCTTCCCCCCTCCCCTTCCCCCTTTTTTCTTGTTTTCACCTTATTTTTAGCCACAACGGTTGGGAGTTTCTTTTGCTTGGATCTGAACAAGCAACAGAATAGGACTATTTTAATTATGAAAATTTTCTCTTTTAGGAATCAGCATGCCAACTGAGCAATGGTCAGTCTTTAAGAGTAATATTCCTGCTATAGCGGAAGCTATTTTGCAGATGAAAAGAAATAAAAGGTGAGGGAAGCATGATGATACTGTTGTTTCTTAACTTTCGAGTTACAGTTCATCAAATTTATTTTATTGAAAAGTCTGAAGTTCTATGCTAGGTTTTCAGGTGTTAGTATCCAGTCTAGATCCCAAGTAGAATCTGTGTCTAATATTTTTTGTTTTTAAGGTTAGGTTGATACCATTTTGTATGTTTTTAGTTTTTGGTTTATGAAAACTGTGCTTCTTTTCTCTCCGGTTTGCATTTTTTTTAAGGAAACATTTGAATTTTTAGTCTAAATCTAATAACAAAAACAAAATTTTAAAAACTACTTAAAAAACTCAGCTTGGATTTTGAAAATATTTGTAAGATTTAGATAACAACTTAAAGAAATTTCGTGTTTATAAACTTAATTTTCAAAAAGCAATTGGTTTTCGAACAAGCTATTTGTTTTGTTTGGTTGTAGCATTTAAAATCTGGACCATAGTTGTATAGTTGAACTATTTGATTGTATTATATCATGTAGATCTGAACATGATGCTGACAAAATTGGTGCCATCTCGAATCCAACTAGAGTAACTTATCCAAAATTTCCAATCGAAACTATTCGATTTGATGGAAAAAACTACCATGCGTGGGCACATCAGATGGAGCTTTTGCTGCAGGACTTAAAGATTGCTTATGTTCTTTCTAATCAATGTCCTACTGCCGTGCTTGGGGCAGAATCAAGCTCTGGAAATGCTGCTCAATCCAAGGTTGCTGAACAGAAATGGATGAGTGATGACCACATGTGTCACCGCAACATTCTGAACTCCCTCTCCGACAGGCTTTTCAATGAATATTCAAAAAAACCAATGAGTGCTAGTGAACTTTGGAAGGAGCTAAAATTGCTTTATTTTTTGGAGGAGTTTGGCACCAAGAGGTCTCAAGTCAAAAAGTATCTAGAATTCAAAATGGTCGAGGAGAAGTCAATATTGGAGCAAGTTGAAGAACTTAATCACATTGCTGATTCTATTGGTTCTGCTGGAACAATTATCGATGAGGATTTTCATGTTAGTGCGATTATCTCAAAGCTTCCACTTTCTTGGAAGAATGTCTGGATGAGCTTAATGCAGGAGCATTATCTTCCCCTTTCGAAGTTGACAGATCGTTTGAGAATTGAAGAACAATTACGTACACAAAAAAATTCACGTCTCTCAAGAGTATCTATCGGTCCTAATACAAGAGGCCAACATCATGCTGCGAATCACCCATCAAAGATGGGAGACCCGATGCCTGTAACCGTACCACTGAGGAAAAAGGAATGCCAAAAGGAGGTCAAAACTTTACTCTGCTTGGATTGCGGCAAGGAAGGGCACACATCTCCAAATTGCCCGACTAAGAAAGTCGACAATTAAGTACCTCGGCAAAGAACATAGCAGATTCTTATCCAGGTAAATAGATCTGACTTCTGAAGGTGAAAATAATAAATTCACCATTTAGATGTCACAGTTCTTGATTCATACGTCCTTTCAAAATATGGAATTCAATAGTCATTTTGAAATTTTGAATGATCTCGAAGGGCTCGGAAACTATCAAAAAGCATAGTTGAGGCTCTATTCCATGTCTGTGCATAACTGATATTCTTGCCGAGTGTAACTCAATTCCTTAGAATAATATATGTTCTCATACTCCTTGAAGCTCAAGTGAATTGTAACGTGTTCAGTACCTTCCTGTATGATTTTAATCGAATCTAGGTTGATAGCTTACTGGTGGATTGTATTACGAGGATATGAAAAGCTTCTTGAACTTGTTAATTTATACCACAGTGATATGCATATCAATGTTGTTAGCAGGGTTTTGGGGATTTATTAGCCATTAGCTAAGCTGTGGAGTTTCTCGATAGAAGAGGGTACTAAAAAACTTGTGGTTGTTGGAAGGGAGGTAGTGTTCAATT TAACCCGAGTTCAAATCTCGGTGGAACCTTCTTTTTCATTTTTCGCCCGTACAGATAATTTCGTCAACCGCCGTGGCCGTCCAAAGCCGAAGCCAATGGAATTTCCTCTACAAATTAAAACACTTCCGATCGGAGACGGCTATTCACAAACTGATTGTTCTTCACCAAGAGACGCCCGGCGGCGTTCCCCTTCCAAGTTCTTCTTTTCTGATACTTTCAGTTTTGTTTCTTAGAAAGATGAACGACGAGACCCGACGGAAAATCGAGGAAAACGTGATTGAGGTACTGAAGCAATCGAACATTGAAGACACGACGGAGTTTAAAGTTAGAAGCCAGGTCGAAGAACGGATTGGAATCGATCTTTCTAATAAACAATGCAAGTTGCTGGTGAGGAACGTGGTAGAGAGCTTTTTACTTTCAATGTCGGAGCGGGTGTGTATGGGGAAAGAGGATGAGCCTGGACCTAGTGTTCGTTACGAGAATAGAGCGGTGGAGCAGAAGATAATCCCGAAGAAGGAGTTCAACGATGATGGCGACCTTCTGATTTGCCGGCTATCTAACAACAGGAGTGTGACAATTCATAAATTTAAAGGGGAACGTATGGTATCAATTAGGCAGTATTATGCAAAAGATGGAAAACAGCTTCCAACTCTAAAAGGAATCAGCATGCCAACTGAGCAATGGTCAGTCTTTAAGAGTAATATTCCTGCTATAGCGGAAGCTATTTTGCAGATGAAAAGAAATAAAAGATCTGAACATGATGCTGACAAAATTGGTGCCATCTCGAATCCAACTAGAGTAACTTATCCAAAATTTCCAATCGAAACTATTCGATTTGATGGAAAAAACTACCATGCGTGGGCACATCAGATGGAGCTTTTGCTGCAGGACTTAAAGATTGCTTATGTTCTTTCTAATCAATGTCCTACTGCCGTGCTTGGGGCAGAATCAAGCTCTGGAAATGCTGCTCAATCCAAGGTTGCTGAACAGAAATGGATGAGTGATGACCACATGTGTCACCGCAACATTCTGAACTCCCTCTCCGACAGGCTTTTCAATGAATATTCAAAAAAACCAATGAGTGCTAGTGAACTTTGGAAGGAGCTAAAATTGCTTTATTTTTTGGAGGAGTTTGGCACCAAGAGGTCTCAAGTCAAAAAGTATCTAGAATTCAAAATGGTCGAGGAGAAGTCAATATTGGAGCAAGTTGAAGAACTTAATCACATTGCTGATTCTATTGGTTCTGCTGGAACAATTATCGATGAGGATTTTCATGTTAGTGCGATTATCTCAAAGCTTCCACTTTCTTGGAAGAATGTCTGGATGAGCTTAATGCAGGAGCATTATCTTCCCCTTTCGAAGTTGACAGATCGTTTGAGAATTGAAGAACAATTACGTACACAAAAAAATTCACGTCTCTCAAGAGTATCTATCGGTCCTAATACAAGAGGCCAACATCATGCTGCGAATCACCCATCAAAGATGGGAGACCCGATGCCTGTAACCGTACCACTGAGGAAAAAGGAATGCCAAAAGGAGGTCAAAACTTTACTCTGCTTGGATTGCGGCAAGGAAGGGCACACATCTCCAAATTGCCCGACTAAGAAAGTCGACAATTAAGTACCTCGGCAAAGAACATAGCAGATTCTTATCCAGGTAAATAGATCTGACTTCTGAAGGTGAAAATAATAAATTCACCATTTAGATGTCACAGTTCTTGATTCATACGTCCTTTCAAAATATGGAATTCAATAGTCATTTTGAAATTTTGAATGATCTCGAAGGGCTCGGAAACTATCAAAAAGCATAGTTGAGGCTCTATTCCATGTCTGTGCATAACTGATATTCTTGCCGAGTGTAACTCAATTCCTTAGAATAATATATGTTCTCATACTCCTTGAAGCTCAAGTGAATTGTAACGTGTTCAGTACCTTCCTGTATGATTTTAATCGAATCTAGGTTGATAGCTTACTGGTGGATTGTATTACGAGGATATGAAAAGCTTCTTGAACTTGTTAATTTATACCACAGTGATATGCATATCAATGTTGTTAGCAGGGTTTTGGGGATTTATTAGCCATTAGCTAAGCTGTGGAGTTTCTCGATAGAAGAGGGTACTAAAAAACTTGTGGTTGTTGGAAGGGAGGTAGTGTTCAATT ATGAACGACGAGACCCGACGGAAAATCGAGGAAAACGTGATTGAGGTACTGAAGCAATCGAACATTGAAGACACGACGGAGTTTAAAGTTAGAAGCCAGGTCGAAGAACGGATTGGAATCGATCTTTCTAATAAACAATGCAAGTTGCTGGTGAGGAACGTGGTAGAGAGCTTTTTACTTTCAATGTCGGAGCGGGTGTGTATGGGGAAAGAGGATGAGCCTGGACCTAGTGTTCGTTACGAGAATAGAGCGGTGGAGCAGAAGATAATCCCGAAGAAGGAGTTCAACGATGATGGCGACCTTCTGATTTGCCGGCTATCTAACAACAGGAGTGTGACAATTCATAAATTTAAAGGGGAACGTATGGTATCAATTAGGCAGTATTATGCAAAAGATGGAAAACAGCTTCCAACTCTAAAAGGAATCAGCATGCCAACTGAGCAATGGTCAGTCTTTAAGAGTAATATTCCTGCTATAGCGGAAGCTATTTTGCAGATGAAAAGAAATAAAAGATCTGAACATGATGCTGACAAAATTGGTGCCATCTCGAATCCAACTAGAGTAACTTATCCAAAATTTCCAATCGAAACTATTCGATTTGATGGAAAAAACTACCATGCGTGGGCACATCAGATGGAGCTTTTGCTGCAGGACTTAAAGATTGCTTATGTTCTTTCTAATCAATGTCCTACTGCCGTGCTTGGGGCAGAATCAAGCTCTGGAAATGCTGCTCAATCCAAGGTTGCTGAACAGAAATGGATGAGTGATGACCACATGTGTCACCGCAACATTCTGAACTCCCTCTCCGACAGGCTTTTCAATGAATATTCAAAAAAACCAATGAGTGCTAGTGAACTTTGGAAGGAGCTAAAATTGCTTTATTTTTTGGAGGAGTTTGGCACCAAGAGGTCTCAAGTCAAAAAGTATCTAGAATTCAAAATGGTCGAGGAGAAGTCAATATTGGAGCAAGTTGAAGAACTTAATCACATTGCTGATTCTATTGGTTCTGCTGGAACAATTATCGATGAGGATTTTCATGTTAGTGCGATTATCTCAAAGCTTCCACTTTCTTGGAAGAATGTCTGGATGAGCTTAATGCAGGAGCATTATCTTCCCCTTTCGAAGTTGACAGATCGTTTGAGAATTGAAGAACAATTACGTACACAAAAAAATTCACGTCTCTCAAGAGTATCTATCGGTCCTAATACAAGAGGCCAACATCATGCTGCGAATCACCCATCAAAGATGGGAGACCCGATGCCTGTAACCGTACCACTGAGGAAAAAGGAATGCCAAAAGGAGGTCAAAACTTTACTCTGCTTGGATTGCGGCAAGGAAGGGCACACATCTCCAAATTGCCCGACTAAGAAAGTCGACAATTAA MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLLSMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGERMVSIRQYYAKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDADKIGAISNPTRVTYPKFPIETIRFDGKNYHAWAHQMELLLQDLKIAYVLSNQCPTAVLGAESSSGNAAQSKVAEQKWMSDDHMCHRNILNSLSDRLFNEYSKKPMSASELWKELKLLYFLEEFGTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSAGTIIDEDFHVSAIISKLPLSWKNVWMSLMQEHYLPLSKLTDRLRIEEQLRTQKNSRLSRVSIGPNTRGQHHAANHPSKMGDPMPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVDN Homology
BLAST of MELO3C006017.jh1.t1 vs. NCBI nr
Match: XP_008437880.1 (PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo] >KAA0048883.1 Zinc knuckle family protein, putative isoform 2 [Cucumis melo var. makuwa]) HSP 1 Score: 918 bits (2372), Expect = 0.0 Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. NCBI nr
Match: TYK20834.1 (Zinc knuckle family protein, putative isoform 2 [Cucumis melo var. makuwa]) HSP 1 Score: 916 bits (2367), Expect = 0.0 Identity = 459/460 (99.78%), Postives = 459/460 (99.78%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. NCBI nr
Match: XP_004134299.1 (uncharacterized protein LOC101205072 [Cucumis sativus] >KGN56418.1 hypothetical protein Csa_011632 [Cucumis sativus]) HSP 1 Score: 846 bits (2186), Expect = 3.07e-308 Identity = 424/461 (91.97%), Postives = 440/461 (95.44%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. NCBI nr
Match: XP_038878142.1 (uncharacterized protein LOC120070296 [Benincasa hispida]) HSP 1 Score: 708 bits (1828), Expect = 7.01e-254 Identity = 363/459 (79.08%), Postives = 402/459 (87.58%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. NCBI nr
Match: XP_022945450.1 (uncharacterized protein LOC111449676 [Cucurbita moschata]) HSP 1 Score: 568 bits (1465), Expect = 8.09e-199 Identity = 296/458 (64.63%), Postives = 362/458 (79.04%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 2.3e-36 Identity = 85/171 (49.71%), Postives = 112/171 (65.50%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.7e-10 Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy Swiss-Prot
Match: P87294 (Putative RNA polymerase II transcriptional coactivator OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16A10.02 PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 2.7e-05 Identity = 27/86 (31.40%), Postives = 44/86 (51.16%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q63396 (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus OX=10116 GN=Sub1 PE=1 SV=3) HSP 1 Score: 50.8 bits (120), Expect = 4.7e-05 Identity = 29/98 (29.59%), Postives = 51/98 (52.04%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q94045 (Putative RNA polymerase II transcriptional coactivator OS=Caenorhabditis elegans OX=6239 GN=T13F2.2 PE=3 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 1.0e-04 Identity = 34/102 (33.33%), Postives = 48/102 (47.06%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TZ44 (Zinc knuckle family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G00980 PE=3 SV=1) HSP 1 Score: 918 bits (2372), Expect = 0.0 Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy TrEMBL
Match: A0A1S3AV18 (uncharacterized protein LOC103483179 OS=Cucumis melo OX=3656 GN=LOC103483179 PE=3 SV=1) HSP 1 Score: 918 bits (2372), Expect = 0.0 Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DBA1 (Zinc knuckle family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00970 PE=3 SV=1) HSP 1 Score: 916 bits (2367), Expect = 0.0 Identity = 459/460 (99.78%), Postives = 459/460 (99.78%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy TrEMBL
Match: A0A0A0L3U5 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119510 PE=3 SV=1) HSP 1 Score: 846 bits (2186), Expect = 1.49e-308 Identity = 424/461 (91.97%), Postives = 440/461 (95.44%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1G0Z2 (uncharacterized protein LOC111449676 OS=Cucurbita moschata OX=3662 GN=LOC111449676 PE=3 SV=1) HSP 1 Score: 568 bits (1465), Expect = 3.91e-199 Identity = 296/458 (64.63%), Postives = 362/458 (79.04%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein ) HSP 1 Score: 270.8 bits (691), Expect = 2.0e-72 Identity = 171/460 (37.17%), Postives = 259/460 (56.30%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. TAIR 10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP) ) HSP 1 Score: 154.8 bits (390), Expect = 1.6e-37 Identity = 85/171 (49.71%), Postives = 112/171 (65.50%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. TAIR 10
Match: AT4G10920.2 (transcriptional coactivator p15 (PC4) family protein (KELP) ) HSP 1 Score: 154.8 bits (390), Expect = 1.6e-37 Identity = 85/171 (49.71%), Postives = 112/171 (65.50%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator ) HSP 1 Score: 68.9 bits (167), Expect = 1.2e-11 Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 0
BLAST of MELO3C006017.jh1.t1 vs. TAIR 10
Match: AT5G09250.2 (ssDNA-binding transcriptional regulator ) HSP 1 Score: 53.5 bits (127), Expect = 5.1e-07 Identity = 27/81 (33.33%), Postives = 42/81 (51.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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