MELO3C004981.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C004981.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RING-CH-type domain-containing protein
Location	chr12: 5006358 .. 5007302 (-)
Sequence length	836
RNA-Seq Expression	MELO3C004981.1
Synteny	MELO3C004981.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGGAGACGAAACATCGACATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGTCCAAATGAACCTGAGACAATTGCTGCATCCCCTTCGAGACCTCGAGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTATGTGCGTGAGAATGAGGAGAATAGCAAGAGGCATGGAGAGGAAATGCTAGAGAGCTCACAGCCAGAGAGTCGTCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAACATGAGTCGATAACTTCAGATCTCATACACCTCGGATGTAGCTGCAAAGATGAGCTTGGAATATCCCATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGGTAAAGTTTCTATGACAATCTTCATCCTCTCCTCTCTTCACCGTTTCCAATAACAGATATGGTGCTCTTAATATAACTCCAATTCAATACCATCCCTTTCTAATGATAGACAATGTGAGATTTGTGGTCAGACCGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAAAGGAGGTTGGTAGCAAGCTCGACCATGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCTGATTTCTTTGGATGATGAGCGATGGTCTTTCTCAAACATCCTATCAACACATTAATCAGCAATAAGGTTTCCACACGTCCAATCCCGGACCTGGGAATAAGGAGGAGCAACAGTTTCACAGAGGGAAGAATTGACAAACATGTATATATAGAACAGTGCAAATGAAAAATGATAACTCAAATAATTCTA

mRNA sequence

CCTGGAGACGAAACATCGACATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGTCCAAATGAACCTGAGACAATTGCTGCATCCCCTTCGAGACCTCGAGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTATGTGCGTGAGAATGAGGAGAATAGCAAGAGGCATGGAGAGGAAATGCTAGAGAGCTCACAGCCAGAGAGTCGTCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAACATGAGTCGATAACTTCAGATCTCATACACCTCGGATGTAGCTGCAAAGATGAGCTTGGAATATCCCATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACCGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAAAGGAGGTTGGTAGCAAGCTCGACCATGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCTGATTTCTTTGGATGATGAGCGATGGTCTTTCTCAAACATCCTATCAACACATTAATCAGCAATAAGGTTTCCACACGTCCAATCCCGGACCTGGGAATAAGGAGGAGCAACAGTTTCACAGAGGGAAGAATTGACAAACATGTATATATAGAACAGTGCAAATGAAAAATGATAACTCAAATAATTCTA

Coding sequence (CDS)

ATGATTGAACAAAATGAAGGATCAAGTGGGATAACAAGTCCAAATGAACCTGAGACAATTGCTGCATCCCCTTCGAGACCTCGAGAAGCGAAAGGGGTAATTGGAGGGGAAGGTGGGACCTATGTGCGTGAGAATGAGGAGAATAGCAAGAGGCATGGAGAGGAAATGCTAGAGAGCTCACAGCCAGAGAGTCGTCAAAACTGCATCATTGATATAAAAAGCAATGGTGAGTCAGTGGATGATGAAGATTCTAGTGAAGAAAAGGTTTGCAGGATATGTCATTTGGGCTCCGAACATGAGTCGATAACTTCAGATCTCATACACCTCGGATGTAGCTGCAAAGATGAGCTTGGAATATCCCATCGTGACTGCGCCGAGATTTGGTTTATGCATCGAGGCAACAGACAATGTGAGATTTGTGGTCAGACCGCAACAAATGTGAGGAGAAACAGGAGTAGCCATTTTGCAATACATCGGAATGAAAGGAGGTTGGTAGCAAGCTCGACCATGTCGACAGTGTCCTTGGACAATGAGGTTTCATTATCATGTTGCTGGGGGCAGCGCTTCTGTAATTTCCTATTAACATGTACAGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGTGCTGATTTCTTTGGATGA

Protein sequence

MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESSQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG

Homology

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BLAST of MELO3C004981.1 vs. ExPASy Swiss-Prot
Match: Q32L65 (E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 8.2e-05
Identity = 25/71 (35.21%), Postives = 32/71 (45.07%), Query Frame = 0


Query: 82  EDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICG 141
           E  S+   CRICH G+  ES+ S      C C   LG  H+ C E W        CE+C 
Sbjct: 56  ETPSDGPFCRICHEGANGESLLSP-----CGCSGTLGAVHKSCLERWLSSSNTSYCELCH 115

Query: 142 QTATNVRRNRS 153
                 +R+RS
Sbjct: 116 TEFAVEKRSRS 121

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BLAST of MELO3C004981.1 vs. ExPASy Swiss-Prot
Match: F4JKK0 (Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.1e-04
Identity = 31/115 (26.96%), Postives = 47/115 (40.87%), Query Frame = 0


Query: 27  PREAKGVIGGEGGTYVRENEENSKRHGEEMLESS-QPESRQNCIIDIKSNGESVDDEDSS 86
           P ++  + G      V E   +S        ++S  P S  +  +   +    VDD D  
Sbjct: 5   PADSLSISGAAASEVVSEPSVSSSSSSSSPNQASPNPFSNMDPAVSTATGSRYVDD-DED 64

Query: 87  EEKVCRICHLGSEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCEIC 141
           EE VCRIC     +     + +   C+C   +   H+DC   W  H   RQCE+C
Sbjct: 65  EEDVCRIC----RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVC 114

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BLAST of MELO3C004981.1 vs. NCBI nr
Match: XP_008463280.1 (PREDICTED: probable E3 ubiquitin ligase SUD1 [Cucumis melo])

HSP 1 Score: 432.2 bits (1110), Expect = 2.6e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60
           MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60

Query: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120
           QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS
Sbjct: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120

Query: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180
           HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS
Sbjct: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180

Query: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214
           LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 213

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BLAST of MELO3C004981.1 vs. NCBI nr
Match: XP_011653704.1 (probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus] >KGN64779.1 hypothetical protein Csa_013679 [Cucumis sativus])

HSP 1 Score: 405.6 bits (1041), Expect = 2.6e-109
Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLE-S 60
           MIEQNEGSSGITSP+EP+TI ASPSRPREAKGVIGGEGGT VRENEEN KRHG EMLE S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
           SQPES QNCIIDIK+NGESVDDEDSSEEKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of MELO3C004981.1 vs. NCBI nr
Match: XP_038887762.1 (probable E3 ubiquitin ligase SUD1 [Benincasa hispida])

HSP 1 Score: 375.6 bits (963), Expect = 2.9e-100
Identity = 190/214 (88.79%), Postives = 196/214 (91.59%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60
           MI+Q+EGSSGITSPNE  TIAASPSRP EAKGVIGGE    V ENEE+ KRHGEEM ESS
Sbjct: 1   MIKQDEGSSGITSPNESGTIAASPSRPHEAKGVIGGESENRVHENEEDGKRHGEEMQESS 60

Query: 61  -QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
            QPES QNCIIDIKSNG S+D EDSSEEKVCRICHL SEHESITSDLIHLGCSCKDELGI
Sbjct: 61  RQPESNQNCIIDIKSNGGSMDGEDSSEEKVCRICHLSSEHESITSDLIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSS FAI +NERRLVASST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSGFAIQQNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFR DFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRVDFFG 214

[Close]

BLAST of MELO3C004981.1 vs. NCBI nr
Match: XP_022147939.1 (uncharacterized protein LOC111016745 [Momordica charantia])

HSP 1 Score: 304.3 bits (778), Expect = 8.3e-79
Identity = 160/215 (74.42%), Postives = 173/215 (80.47%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEEN--SKRHGEEMLE 60
           MI+Q+EGSSG  + +E  T+ A P RP+EAK V GG     V+ + EN   KRHGEE   
Sbjct: 1   MIKQDEGSSGTPNRDESVTVLALPPRPQEAKEVTGG----VVQNHNENEAGKRHGEE--- 60

Query: 61  SSQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELG 120
               ES  NCIIDIKS+GESVD EDSSEEKVCRICHL SEH+SI SDLI LGC CKDELG
Sbjct: 61  --SKESHHNCIIDIKSSGESVDGEDSSEEKVCRICHLSSEHQSIASDLIQLGCRCKDELG 120

Query: 121 ISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNE 180
           ISHRDCAEIWFMHRGNRQCEICGQTATNVR  RS  F I RNERRLVASST+STVSLD++
Sbjct: 121 ISHRDCAEIWFMHRGNRQCEICGQTATNVRGIRSGGFMIQRNERRLVASSTVSTVSLDSD 180

Query: 181 VSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214
            SLSCCWGQRFCNFLLTCTVLAFLLPWFFR DFFG
Sbjct: 181 DSLSCCWGQRFCNFLLTCTVLAFLLPWFFRLDFFG 206

[Close]

BLAST of MELO3C004981.1 vs. NCBI nr
Match: XP_022930769.1 (uncharacterized protein LOC111437147 isoform X1 [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 7.3e-75
Identity = 149/212 (70.28%), Postives = 166/212 (78.30%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60
           MIEQ EGSS  TSP+EPE +  SP+RP EAK V+        R   E+   H      S 
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVL-------ARSEHEHEHEHEGAGKSSR 60

Query: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120
           QPES   CIIDIKS GES+DD +SS EKVCRICHL S+ ES++SDL++LGC CK ELG+S
Sbjct: 61  QPESHHTCIIDIKSTGESMDDANSSNEKVCRICHLSSD-ESVSSDLVNLGCRCKGELGMS 120

Query: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180
           HRDCAEIWFMHRGNRQCEICGQTATNVR NRSS F I RNERR+VASS++S VSLDNEV 
Sbjct: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVP 180

Query: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 213
           LSCCWGQRFCNFLLTCTVLAFLLPWFFR +FF
Sbjct: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of MELO3C004981.1 vs. ExPASy TrEMBL
Match: A0A1S3CJ88 (probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.3e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60
           MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60

Query: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120
           QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS
Sbjct: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120

Query: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180
           HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS
Sbjct: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180

Query: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214
           LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 213

[Close]

BLAST of MELO3C004981.1 vs. ExPASy TrEMBL
Match: A0A0A0LUV6 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G096610 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLE-S 60
           MIEQNEGSSGITSP+EP+TI ASPSRPREAKGVIGGEGGT VRENEEN KRHG EMLE S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  SQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGI 120
           SQPES QNCIIDIK+NGESVDDEDSSEEKVCRICHLGSE+ESITS+LIHLGCSCKDELGI
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEV 180
           SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASST+STVSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214

[Close]

BLAST of MELO3C004981.1 vs. ExPASy TrEMBL
Match: A0A6J1D2I2 (uncharacterized protein LOC111016745 OS=Momordica charantia OX=3673 GN=LOC111016745 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 4.0e-79
Identity = 160/215 (74.42%), Postives = 173/215 (80.47%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEEN--SKRHGEEMLE 60
           MI+Q+EGSSG  + +E  T+ A P RP+EAK V GG     V+ + EN   KRHGEE   
Sbjct: 1   MIKQDEGSSGTPNRDESVTVLALPPRPQEAKEVTGG----VVQNHNENEAGKRHGEE--- 60

Query: 61  SSQPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELG 120
               ES  NCIIDIKS+GESVD EDSSEEKVCRICHL SEH+SI SDLI LGC CKDELG
Sbjct: 61  --SKESHHNCIIDIKSSGESVDGEDSSEEKVCRICHLSSEHQSIASDLIQLGCRCKDELG 120

Query: 121 ISHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNE 180
           ISHRDCAEIWFMHRGNRQCEICGQTATNVR  RS  F I RNERRLVASST+STVSLD++
Sbjct: 121 ISHRDCAEIWFMHRGNRQCEICGQTATNVRGIRSGGFMIQRNERRLVASSTVSTVSLDSD 180

Query: 181 VSLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFFG 214
            SLSCCWGQRFCNFLLTCTVLAFLLPWFFR DFFG
Sbjct: 181 DSLSCCWGQRFCNFLLTCTVLAFLLPWFFRLDFFG 206

[Close]

BLAST of MELO3C004981.1 vs. ExPASy TrEMBL
Match: A0A6J1ESF7 (uncharacterized protein LOC111437147 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437147 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.5e-75
Identity = 149/212 (70.28%), Postives = 166/212 (78.30%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60
           MIEQ EGSS  TSP+EPE +  SP+RP EAK V+        R   E+   H      S 
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVL-------ARSEHEHEHEHEGAGKSSR 60

Query: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120
           QPES   CIIDIKS GES+DD +SS EKVCRICHL S+ ES++SDL++LGC CK ELG+S
Sbjct: 61  QPESHHTCIIDIKSTGESMDDANSSNEKVCRICHLSSD-ESVSSDLVNLGCRCKGELGMS 120

Query: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180
           HRDCAEIWFMHRGNRQCEICGQTATNVR NRSS F I RNERR+VASS++S VSLDNEV 
Sbjct: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVP 180

Query: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 213
           LSCCWGQRFCNFLLTCTVLAFLLPWFFR +FF
Sbjct: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of MELO3C004981.1 vs. ExPASy TrEMBL
Match: A0A6J1JNU4 (uncharacterized protein LOC111486158 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486158 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.7e-74
Identity = 148/212 (69.81%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60
           MIEQ EGSS  TSP+EPE +   P+RP EAK V+     ++  E+E   K        S 
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGK-------SSR 60

Query: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120
           QPES+  CIIDIKS GES+DD +SS+EKVCRICHL S+ +S+TSDL++LGC CK ELG+S
Sbjct: 61  QPESQHTCIIDIKSTGESMDDANSSDEKVCRICHLSSD-QSVTSDLVNLGCRCKGELGMS 120

Query: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180
           HRDCAEIWF HRGNRQCEICGQTATNVR NRSS F I RNERR+VASS++S VSLDNEVS
Sbjct: 121 HRDCAEIWFTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVS 180

Query: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 213
           LSCCWGQRFCNFLLTCTVLAFLLPWFFR +FF
Sbjct: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of MELO3C004981.1 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 4.5e-22
Identity = 61/145 (42.07%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 70  IDIKSNGESVDDED--SSEEKVCRICHLG---SEHESITSDLIHLGCSCKDELGISHRDC 129
           +D +++ ESV       S EK CRICHLG   S HE    D + LGCSCKD+LG  H+ C
Sbjct: 56  LDDETDTESVASGSIRGSPEKDCRICHLGLESSRHE--CGDPMVLGCSCKDDLGYVHKQC 115

Query: 130 AEIWFMHRGNRQCEICGQTATNVRR--NRSSHFAIHRNERRLVASSTMSTVSLDNEVSLS 189
           A+ WF  +GN+ CEIC   A N  +  N      +  N   + A +T + V+  +     
Sbjct: 116 ADTWFKIKGNKTCEICRSIAQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRR 175

Query: 190 CCWGQRFCNFLLTCTVLAFLLPWFF 208
            C G RF NFLLTC V AF++ WFF
Sbjct: 176 LCRGNRFLNFLLTCMVCAFVISWFF 198

[Close]

BLAST of MELO3C004981.1 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 84  SSEEKVCRICHLGSEHESITSDL-IHLGCSCKDELGISHRDCAEIWFMHRGNRQCEICGQ 143
           S  E+ CRICH+  +  ++ S + I LGCSCK +L  +H+ CAE WF  +GN+ CE+CG 
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

Query: 144 TATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVSLSCCWGQRFCNFLLTCTVLAFL 203
            A NV  +        RNE   V + T+ T         S   G RF NFLL C V AF+
Sbjct: 133 IAGNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFV 192

Query: 204 LPWFF 208
           + W F
Sbjct: 193 ISWLF 197

[Close]

BLAST of MELO3C004981.1 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-16
Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 0


Query: 75  NGESVDDEDSS--EEKVCRICHLGSEHESITSDLIHLGCSCKDELGISHRDCAEIWFMHR 134
           +   +DD+D++   EK CRICHLG E        I LGCSCKD+L ++HR CAE WF  +
Sbjct: 67  SSSEIDDDDATAPPEKDCRICHLGVETSG--GGAIELGCSCKDDLAVAHRQCAETWFKIK 126

Query: 135 GNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVSLSCCW-GQRFCN 194
           G++ CEIC   A NV    +        ER L      +         +   W  QR  N
Sbjct: 127 GDKTCEICQSVARNV-GGANEMVGSTMEERELRNGEETAAGEGGGATVVENRWQPQRVVN 186

Query: 195 FLLTCTVLAFLLPWFF 208
            +L C V  F + W F
Sbjct: 187 LVLACMVFGFFISWIF 199

[Close]

BLAST of MELO3C004981.1 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-15
Identity = 52/134 (38.81%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 87  EKVCRICHLGSEH--------ESITSDLIHLGCSCKDELGISHRDCAEIWFMHRGNRQCE 146
           E++CRICH GS+         +S++ +LI +GC CK+ELG++H  CAE WF  RGN  CE
Sbjct: 99  ERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCE 158

Query: 147 ICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNE----VSLSCCWGQRFCNFLL 206
           ICG TA NV       ++  R+             +LD         SCC    F  FLL
Sbjct: 159 ICGCTAKNVTVRLMEDWSGERDN------------TLDGRRRRGRGQSCC---IFMVFLL 213

Query: 207 TCTVLAFLLPWFFR 209
           T      LL WFF+
Sbjct: 219 T----ILLLHWFFK 213

[Close]

BLAST of MELO3C004981.1 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-13
Identity = 47/137 (34.31%), Postives = 63/137 (45.99%), Query Frame = 0


Query: 71  DIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGISHRDCAEIWFM 130
           D +   +S DDED  +E+         E E      + LGCSCK +LG++H  CAE WF 
Sbjct: 98  DEEEEDDSDDDEDEEDEEE----EEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFK 157

Query: 131 HRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVSLSCCWGQRFC 190
            +GN  CEICG  A NV   +S+  +      +  A       SL          G+   
Sbjct: 158 IKGNMTCEICGAMALNVAGEQSNPESTASTHSQAAAGQ-----SLTQTEPRGIWHGRPVM 217

Query: 191 NFLLTCTVLAFLLPWFF 208
           NFLL   V AF++ W F
Sbjct: 218 NFLLAAMVFAFVVSWLF 225

The following BLAST results are available for this feature:

BLAST of MELO3C004981.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32L65	8.2e-05	35.21	E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1	[more]
F4JKK0	3.1e-04	26.96	Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 S...	[more]

BLAST of MELO3C004981.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463280.1	2.6e-117	100.00	PREDICTED: probable E3 ubiquitin ligase SUD1 [Cucumis melo]	[more]
XP_011653704.1	2.6e-109	94.39	probable E3 ubiquitin ligase SUD1 isoform X1 [Cucumis sativus] >KGN64779.1 hypot...	[more]
XP_038887762.1	2.9e-100	88.79	probable E3 ubiquitin ligase SUD1 [Benincasa hispida]	[more]
XP_022147939.1	8.3e-79	74.42	uncharacterized protein LOC111016745 [Momordica charantia]	[more]
XP_022930769.1	7.3e-75	70.28	uncharacterized protein LOC111437147 isoform X1 [Cucurbita moschata]	[more]

BLAST of MELO3C004981.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJ88	1.3e-117	100.00	probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 S...	[more]
A0A0A0LUV6	1.3e-109	94.39	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G09661...	[more]
A0A6J1D2I2	4.0e-79	74.42	uncharacterized protein LOC111016745 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1ESF7	3.5e-75	70.28	uncharacterized protein LOC111437147 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JNU4	1.7e-74	69.81	uncharacterized protein LOC111486158 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MELO3C004981.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01070.2	4.5e-22	42.07	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	2.1e-19	40.80	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	2.8e-16	36.76	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	1.4e-15	38.81	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	6.5e-13	34.31	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 89..141 e-value: 1.3E-11 score: 54.6
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 90..140 e-value: 2.5E-8 score: 33.9
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 82..147 score: 19.210402
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 73..153 e-value: 8.2E-16 score: 59.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR46214:SF8	OS01G0731800 PROTEIN	coord: 15..211
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 15..211
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 84..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C004981	MELO3C004981	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004981.1:exon:344526	MELO3C004981.1:exon:344526	exon
MELO3C004981.1:exon:344525	MELO3C004981.1:exon:344525	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004981.1:three_prime_utr	MELO3C004981.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004981.1:cds	MELO3C004981.1:cds	CDS
MELO3C004981.1:cds	MELO3C004981.1:cds_2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C004981.1:five_prime_utr	MELO3C004981.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C004981.1	MELO3C004981.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding