MELO3C003883.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C003883.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr04: 5950118 .. 5950303 (-)
Sequence length	186
RNA-Seq Expression	MELO3C003883.1
Synteny	MELO3C003883.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

mRNA sequence

ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

Coding sequence (CDS)

ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

Protein sequence

MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL

Homology

[Close]

BLAST of MELO3C003883.1 vs. NCBI nr
Match: KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 5.0e-13
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQDDVRASHPA  S+ R GSNGSK+ R GQ VG I++ H+ALEC N+QLR+IAEWPS  
Sbjct: 157 MSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLRMIAEWPSRT 216

Query: 61  L 62
           L
Sbjct: 217 L 217

[Close]

BLAST of MELO3C003883.1 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+  SKGR  S+GSKR R  Q+ G I++ H A+EC N+QLR IAEWP+ A
Sbjct: 96  MSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAEWPARA 155

Query: 61  L 62
           L
Sbjct: 156 L 156

[Close]

BLAST of MELO3C003883.1 vs. NCBI nr
Match: KAA0065782.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-10
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+RA +GR GS+GSKR RG Q+   +++ + A EC N+QL+++AEWP+ A
Sbjct: 120 MSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLKIVAEWPARA 179

Query: 61  L 62
           L
Sbjct: 180 L 180

[Close]

BLAST of MELO3C003883.1 vs. NCBI nr
Match: KAA0031723.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-10
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           +SQDDVRAS P+ AS+GR GS+GSKR RG QR   ++  H AL+ AN QLR+IAEWP+HA
Sbjct: 79  LSQDDVRASRPSCASEGRIGSSGSKRKRGSQRDLDVEGIHLALDQANEQLRMIAEWPAHA 138

Query: 61  L 62
           L
Sbjct: 139 L 139

[Close]

BLAST of MELO3C003883.1 vs. NCBI nr
Match: KAA0042500.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-10
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           +SQDDVRAS P+RAS+GR GS+GSKR RG QR   ++  H AL+  N QLR IAEWP+H 
Sbjct: 183 LSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPAHN 242

Query: 61  L 62
           L
Sbjct: 243 L 243

[Close]

BLAST of MELO3C003883.1 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.4e-13
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQDDVRASHPA  S+ R GSNGSK+ R GQ VG I++ H+ALEC N+QLR+IAEWPS  
Sbjct: 157 MSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQLRMIAEWPSRT 216

Query: 61  L 62
           L
Sbjct: 217 L 217

[Close]

BLAST of MELO3C003883.1 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.6e-11
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+  SKGR  S+GSKR R  Q+ G I++ H A+EC N+QLR IAEWP+ A
Sbjct: 96  MSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAIECTNDQLRTIAEWPARA 155

Query: 61  L 62
           L
Sbjct: 156 L 156

[Close]

BLAST of MELO3C003883.1 vs. ExPASy TrEMBL
Match: A0A5D3BD15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001730 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DVRAS P+RA +GR GS+GSKR RG Q+   +++ + A EC N+QL+++AEWP+ A
Sbjct: 120 MSQEDVRASQPSRAFEGRVGSSGSKRKRGSQQEAELEVIYMARECTNDQLKIVAEWPARA 179

Query: 61  L 62
           L
Sbjct: 180 L 180

[Close]

BLAST of MELO3C003883.1 vs. ExPASy TrEMBL
Match: A0A5A7SNB3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005110 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           +SQDDVRAS P+ AS+GR GS+GSKR RG QR   ++  H AL+ AN QLR+IAEWP+HA
Sbjct: 79  LSQDDVRASRPSCASEGRIGSSGSKRKRGSQRDLDVEGIHLALDQANEQLRMIAEWPAHA 138

Query: 61  L 62
           L
Sbjct: 139 L 139

[Close]

BLAST of MELO3C003883.1 vs. ExPASy TrEMBL
Match: A0A5A7TGP1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00540 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           +SQDDVRAS P+RAS+GR GS+GSKR RG QR   ++  H AL+  N QLR IAEWP+H 
Sbjct: 183 LSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPAHN 242

Query: 61  L 62
           L
Sbjct: 243 L 243

The following BLAST results are available for this feature:

BLAST of MELO3C003883.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067019.1	5.0e-13	68.85	retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p...	[more]
KAA0050190.1	1.4e-10	60.66	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p...	[more]
KAA0065782.1	3.1e-10	55.74	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96521.1 retrotransposon p...	[more]
KAA0031723.1	3.1e-10	63.93	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042500.1	3.1e-10	62.30	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C003883.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C003883.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DS68	2.4e-13	68.85	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4I8	6.6e-11	60.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BD15	1.5e-10	55.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SNB3	1.5e-10	63.93	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TGP1	1.5e-10	62.30	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C003883.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C003883	MELO3C003883	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C003883.1:exon:99692	MELO3C003883.1:exon:99692	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C003883.1:cds	MELO3C003883.1:cds	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C003883.1	MELO3C003883.1-protein	polypeptide