MELO3C002207.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C002207.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	protein PXR1
Location	chr12: 24198905 .. 24200323 (-)
Sequence length	492
RNA-Seq Expression	MELO3C002207.1
Synteny	MELO3C002207.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCAATAATTGCACAACATTGTTCATTCAGTTTGCCTTCAATTCTGTCTTGGAAGAGAGTAACTATTGGTACGGACCTCACTGCCATTACAGGTTTTCTTCTTTCTCTCTCTCTCTCTCTCCACTACTTTAATAGTTGAATGAATTGGCTCATGTTCTGGATCTGATTTACTTTCACTCTAATTTGTATGAATTCTCTCCGGGGTTTCATGTTCAAAACGTTGATCTCTGATTCCCTCACCAATGATTTATGCCAATTAATAGTTGAATGTTGCCCTTTGTTTTTTTTTTAAAAAAATTACTCCTAATTTGACATTCCATTTATGTTTCCAAACTAATCCCAAAATGAAAGTTCCTTTTAATGAAAATTGGTACTTAGCGCAATGAGGATGGCTTAGAAATGATATGCATTAAAAACAAAACATGAGTTCCAAAGGACTATTCATGAAACAATCGTCAAGTGTAAGGTCTATTGATTTCTTTAACAAGGGATCCTCAACTGTGTGATAGTGTTCGGAGACCCTAGTTAGCTACATCTTCCGTATCAAAGAGGATTTTGAAATTGCAGACCGCTGTGGTCTATTTTTAGGAGTTGAGAGCCAAAACTCAAAAAGGGTGATGTACAAGAGTTATGCGAACTATATATGACCCACAACACTCGTTATATATGACCCACAACACTCGTTCGCCACACCCTACCTATCAAAGAGGTTTTTCTTACTATACACTATTGTTGTTTTTTTCTCAAGGGTGGGGCATAATTCTAGTATCAAAGTGGTCATTCTTTTAACGGATTTCTAGTTTTAGAGTAGTTTTGAAATGTTTATGTAAGGTTAAAAGAAAAATGATAAAGTTTGAGGATTTTCTAGTTTTAGAGTAGTTTTGAAATGTTTATGTAAGGTTAAAAGAAAAATGATAAAGTTTGAGGATATGTTTTATAGTTTAACGAATATGAAAGCCAGCTATCTATGTAAAATTAACATCAGTAACATGTTTAGAAACGGTTGGAATGTTTGACAGATTAAATAATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTAAGGTAGAGAAGAAGGAGAAGAAAGATAAAGAGAAGCATGGAGAAGGAGAAGATGAAGAGAAAAAGAAGAAGAAGAAAGAGAAAAACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGCCAAAATGCAGGCTTTGGCTGTAAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTCCCTCTTGAATCCTTTCCTTCTACCTTCTTTGAATTATATATACACACTTTCAATTTTCACCCCCTACAATTTTTTTTTTTCCTTTTACATCTATATTGAGCTTAATAAATACATTTCTTTTTTTGACAACATACACTT

mRNA sequence

GTCCAATAATTGCACAACATTGTTCATTCAGTTTGCCTTCAATTCTGTCTTGGAAGAGAGTAACTATTGGTACGGACCTCACTGCCATTACAGATTAAATAATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTAAGGTAGAGAAGAAGGAGAAGAAAGATAAAGAGAAGCATGGAGAAGGAGAAGATGAAGAGAAAAAGAAGAAGAAGAAAGAGAAAAACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGCCAAAATGCAGGCTTTGGCTGTAAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTCCCTCTTGAATCCTTTCCTTCTACCTTCTTTGAATTATATATACACACTTTCAATTTTCACCCCCTACAATTTTTTTTTTTCCTTTTACATCTATATTGAGCTTAATAAATACATTTCTTTTTTTGACAACATACACTT

Coding sequence (CDS)

ATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTAAGGTAGAGAAGAAGGAGAAGAAAGATAAAGAGAAGCATGGAGAAGGAGAAGATGAAGAGAAAAAGAAGAAGAAGAAAGAGAAAAACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGCCAAAATGCAGGCTTTGGCTGTAAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTCCCTCTTGA

Protein sequence

MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPPPS

Homology

[Close]

BLAST of MELO3C002207.1 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 9.9e-31
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK 60
          MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK
Sbjct: 1  MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK 60

Query: 61 MQALAVKKEEILKLLHEAEQNPPPPS 87
          MQALAVKKEEILKLLHEAEQNPPPPS
Sbjct: 61 MQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of MELO3C002207.1 vs. NCBI nr
Match: XP_022137487.1 (nucleolar protein 58 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1   MGETSEEKHEG----KVEKKEKKDKEKH-----GEGEDEEKKKKKKEKNPADKKDPTKLR 60
           MGE SEEKHEG    K EKKEKKDKEKH     GEGE +++KK+KK+KNP DKKDPTKLR
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKKKNPEDKKDPTKLR 69

Query: 61  QKLEKLEAKMQALAVKKEEILKLLHEAEQN----PPPPS 87
           QKLEKLE KM+ LA+KKEE+LKLL EAEQN    PPPPS
Sbjct: 70  QKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPS 108

[Close]

BLAST of MELO3C002207.1 vs. NCBI nr
Match: KAG7019857.1 (hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 71/102 (69.61%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MGETSEEKHEGKVEKKE-KKDKEKHGEGEDEE-----------------KKKKKKEKNPA 60
           MG TSEEKHEGKVEKKE KKDKEKH E E+EE                 +KK+KK+K+PA
Sbjct: 1   MGGTSEEKHEGKVEKKEKKKDKEKHEEEEEEEDDDHGKKKGKDKDKEEAEKKEKKKKDPA 60

Query: 61  DKKDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPP 85
           D KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAEQN  P
Sbjct: 61  DMKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 102

[Close]

BLAST of MELO3C002207.1 vs. NCBI nr
Match: KAG6584261.1 (hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 6.9e-16
Identity = 69/100 (69.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 1   MGETSEEKHEGKVEKKE-KKDKEKHGEGEDEE---------------KKKKKKEKNPADK 60
           MG TSEEKHEGKVEKKE KKDKEKH E E+++               +KK+KK+K+PAD 
Sbjct: 1   MGGTSEEKHEGKVEKKEKKKDKEKHEEEEEDDDHSKKKGKDKDKEEGEKKEKKKKDPADM 60

Query: 61  KDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPP 85
           KDP KLRQKLEKLEAKMQALAVKKEEILKL+HEAEQN  P
Sbjct: 61  KDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 100

[Close]

BLAST of MELO3C002207.1 vs. NCBI nr
Match: XP_022923831.1 (protein PXR1 [Cucurbita moschata])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 70/100 (70.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MGETSEEKHEGKVEKKE-KKDKEKHGEGEDEEKKKK---------------KKEKNPADK 60
           MG TSEEKHEGKVEKKE KKDKEKH E ED+  KKK               KK+K+PAD 
Sbjct: 27  MGGTSEEKHEGKVEKKEKKKDKEKHEEEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPADM 86

Query: 61  KDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPP 85
           KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAEQN  P
Sbjct: 87  KDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

[Close]

BLAST of MELO3C002207.1 vs. ExPASy TrEMBL
Match: A0A1S3AV24 (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.8e-31
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK 60
          MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK
Sbjct: 1  MGETSEEKHEGKVEKKEKKDKEKHGEGEDEEKKKKKKEKNPADKKDPTKLRQKLEKLEAK 60

Query: 61 MQALAVKKEEILKLLHEAEQNPPPPS 87
          MQALAVKKEEILKLLHEAEQNPPPPS
Sbjct: 61 MQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of MELO3C002207.1 vs. ExPASy TrEMBL
Match: A0A0A0LQQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MGETSEEKHEGKV---EKKEKKDKEKHG-EGEDEE-KKKKKKEKNPADKKDPTKLRQKLE 60
          MGETSEEKHEG+V   EKKEKKDKEKHG EGEDEE KKKKKKEK+PADKKDPTKLRQKLE
Sbjct: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60

Query: 61 KLEAKMQALAVKKEEILKLLHEAEQNPPPPS 87
          KLE KMQALAVKKEEILKLLHEAEQNPPP S
Sbjct: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 91

[Close]

BLAST of MELO3C002207.1 vs. ExPASy TrEMBL
Match: A0A6J1C8D9 (nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 71/99 (71.72%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 1   MGETSEEKHEG----KVEKKEKKDKEKH-----GEGEDEEKKKKKKEKNPADKKDPTKLR 60
           MGE SEEKHEG    K EKKEKKDKEKH     GEGE +++KK+KK+KNP DKKDPTKLR
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKKKNPEDKKDPTKLR 69

Query: 61  QKLEKLEAKMQALAVKKEEILKLLHEAEQN----PPPPS 87
           QKLEKLE KM+ LA+KKEE+LKLL EAEQN    PPPPS
Sbjct: 70  QKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPS 108

[Close]

BLAST of MELO3C002207.1 vs. ExPASy TrEMBL
Match: A0A6J1E7S6 (protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.4e-16
Identity = 70/100 (70.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MGETSEEKHEGKVEKKE-KKDKEKHGEGEDEEKKKK---------------KKEKNPADK 60
           MG TSEEKHEGKVEKKE KKDKEKH E ED+  KKK               KK+K+PAD 
Sbjct: 27  MGGTSEEKHEGKVEKKEKKKDKEKHEEEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPADM 86

Query: 61  KDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPPP 85
           KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAEQN  P
Sbjct: 87  KDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

[Close]

BLAST of MELO3C002207.1 vs. ExPASy TrEMBL
Match: A0A6J1K499 (protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 70/101 (69.31%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 1   MGETSEEKHEGKVEKKEKKD--------KEKHGEGEDEE----KKKKKKEKNPADKKDPT 60
           MG  SEEKHE KVEKKEKK         KEK G+ +D+E    +KK+KK K+PADKKDPT
Sbjct: 1   MGGNSEEKHEDKVEKKEKKHEEEGDEKRKEKKGKDKDKEGKEGEKKEKKPKDPADKKDPT 60

Query: 61  KLRQKLEKLEAKMQALAVKKEEILKLLHEAEQN---PPPPS 87
           KLRQKLEKLE KMQALAVKKEE+LKLLHEAEQN    PPPS
Sbjct: 61  KLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPPS 101

[Close]

BLAST of MELO3C002207.1 vs. TAIR 10
Match: AT5G62750.1 (unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae - 48; Bacteria - 2086; Metazoa - 8361; Fungi - 2243; Plants - 1040; Viruses - 210; Other Eukaryotes - 10954 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 1   MGETSE--------EKHEGKVEKKEKKDKEKH---------------GEGEDEEKKKK-- 60
           MGET E        E+   K EK EKK+K+K                 EGED+EKK K  
Sbjct: 1   MGETEEKVKNHDNKEEEHNKAEKAEKKEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKK 60

Query: 61  ----KKEKNPADKKDPTKLRQKLEKLEAKMQALAVKKEEILKLLHEAEQNPP 84
               KKEKNP DKKDP KL+ KL+K+E K+QA+ +KK+EI+KL+H+AEQ  P
Sbjct: 61  DKKAKKEKNPEDKKDPEKLKMKLQKIEEKIQAMVLKKDEIVKLIHDAEQAKP 112

The following BLAST results are available for this feature:

BLAST of MELO3C002207.1 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C002207.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437610.1	9.9e-31	100.00	PREDICTED: protein PXR1 [Cucumis melo]	[more]
XP_022137487.1	2.8e-17	71.72	nucleolar protein 58 [Momordica charantia]	[more]
KAG7019857.1	2.4e-16	69.61	hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6584261.1	6.9e-16	69.00	hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923831.1	1.5e-15	70.00	protein PXR1 [Cucurbita moschata]	[more]

BLAST of MELO3C002207.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AV24	4.8e-31	100.00	protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1	[more]
A0A0A0LQQ8	3.3e-24	90.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1	[more]
A0A6J1C8D9	1.4e-17	71.72	nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1	[more]
A0A6J1E7S6	7.4e-16	70.00	protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1	[more]
A0A6J1K499	1.7e-15	69.31	protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1	[more]

BLAST of MELO3C002207.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62750.1	1.3e-09	47.32	unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	PANTHER	PTHR36812:SF2	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 6..83
None	No IPR available	PANTHER	PTHR36812	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 6..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C002207	MELO3C002207	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C002207.1:exon:364111	MELO3C002207.1:exon:364111	exon
MELO3C002207.1:exon:364110	MELO3C002207.1:exon:364110	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C002207.1:three_prime_utr	MELO3C002207.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C002207.1:cds	MELO3C002207.1:cds	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C002207.1:five_prime_utr	MELO3C002207.1:five_prime_utr	five_prime_UTR
MELO3C002207.1:five_prime_utr	MELO3C002207.1:five_prime_utr_2	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C002207.1	MELO3C002207.1-protein	polypeptide